1 new commit in galaxy-central:
https://bitbucket.org/galaxy/galaxy-central/changeset/d00337a396ff/ changeset: d00337a396ff user: dan date: 2011-12-13 15:45:49 summary: Add EBI ENA SRA tool contributed by Iain Cleland. affected #: 3 files
diff -r 7dd3a089101138a4796eb73a5f1391d2f436723e -r d00337a396ffd79e78ed38b9365e66d055b1cfc4 tool_conf.xml.main --- a/tool_conf.xml.main +++ b/tool_conf.xml.main @@ -5,6 +5,7 @@ <tool file="data_source/ucsc_tablebrowser.xml" /><tool file="data_source/ucsc_tablebrowser_archaea.xml" /><tool file="data_source/bx_browser.xml" /> + <tool file="data_source/ebi_sra.xml"/><tool file="data_source/biomart.xml" /><tool file="data_source/gramene_mart.xml" /><tool file="data_source/flymine.xml" />
diff -r 7dd3a089101138a4796eb73a5f1391d2f436723e -r d00337a396ffd79e78ed38b9365e66d055b1cfc4 tool_conf.xml.sample --- a/tool_conf.xml.sample +++ b/tool_conf.xml.sample @@ -6,6 +6,7 @@ <tool file="data_source/ucsc_tablebrowser_test.xml" /><tool file="data_source/ucsc_tablebrowser_archaea.xml" /><tool file="data_source/bx_browser.xml" /> + <tool file="data_source/ebi_sra.xml"/><tool file="data_source/microbial_import.xml" /><tool file="data_source/biomart.xml" /><tool file="data_source/biomart_test.xml" />
diff -r 7dd3a089101138a4796eb73a5f1391d2f436723e -r d00337a396ffd79e78ed38b9365e66d055b1cfc4 tools/data_source/ebi_sra.xml --- /dev/null +++ b/tools/data_source/ebi_sra.xml @@ -0,0 +1,15 @@ +<?xml version="1.0"?> +<tool name="EBI SRA" id="ebi_sra_main" tool_type="data_source" version="1.0.0"> + <description>ENA SRA</description> + <!-- This paython script imports the file into Galaxy --> + <command interpreter="python">data_source.py $output $__app__.config.output_size_limit</command> + <!-- The URL where Galaxy will forwars the user when this tool is accessed from the Get Data menu --> + <inputs action="http://www.ebi.ac.uk/ena/" check_values="false" method="get"> + <display>go to EBI SRA server $GALAXY_URL</display> + </inputs> + <uihints minwidth="800"/> + <outputs> + <data name="output" format="fastq"/> + </outputs> + <options sanitize="False" refresh="True"/> +</tool>
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
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