1 new commit in galaxy-central:
https://bitbucket.org/galaxy/galaxy-central/changeset/d69ccbd53ea2/ changeset: d69ccbd53ea2 user: jgoecks date: 2012-06-08 19:48:37 summary: Fix bug in setting Bowtie2 parameters. affected #: 1 file
diff -r 2f2870f4f67d2198c69b44af688b5b37174459b0 -r d69ccbd53ea295e0a4ad0068317bf7238eb1f3b8 tools/sr_mapping/bowtie2_wrapper.xml --- a/tools/sr_mapping/bowtie2_wrapper.xml +++ b/tools/sr_mapping/bowtie2_wrapper.xml @@ -35,10 +35,12 @@ ## Set params. --settings=$params.settingsType
- #if str($params.align_type) == "end_to_end": - --end-to-end --preset-alignment=$params.preset.align_preset_select - #else: - --local --preset-alignment=$params.preset.align_preset_select-local + #if $params.settingsType == "full": + #if str($params.align_type) == "end_to_end": + --end-to-end --preset-alignment=$params.preset.align_preset_select + #else: + --local --preset-alignment=$params.preset.align_preset_select-local + #end if #end if </command><inputs>
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
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