1 new commit in galaxy-central:
https://bitbucket.org/galaxy/galaxy-central/changeset/559105c554d5/ changeset: 559105c554d5 user: dannon date: 2012-04-30 18:16:09 summary: Extract workflow - fix nested dataset input mapping. affected #: 1 file
diff -r c542aecc608617645d31c6ce9775f31a93c10bef -r 559105c554d540d8137d6583c58b2e237fe1eff4 lib/galaxy/web/controllers/workflow.py --- a/lib/galaxy/web/controllers/workflow.py +++ b/lib/galaxy/web/controllers/workflow.py @@ -1338,11 +1338,6 @@ tool = trans.app.toolbox.get_tool( job.tool_id ) param_values = job.get_param_values( trans.app ) associations = cleanup_param_values( tool.inputs, param_values ) - # Doing it this way breaks dynamic parameters, backed out temporarily. - # def extract_callback( input, value, prefixed_name, prefixed_label ): - # if isinstance( value, UnvalidatedValue ): - # return str( value ) - # visit_input_values( tool.inputs, param_values, extract_callback ) step = model.WorkflowStep() step.type = 'tool' step.tool_id = job.tool_id @@ -2043,13 +2038,11 @@ group_values = values[key] for i, rep_values in enumerate( group_values ): rep_index = rep_values['__index__'] - prefix = "%s_%d|" % ( key, rep_index ) - cleanup( prefix, input.inputs, group_values[i] ) + cleanup( "%s%s_%d|" % (prefix, key, rep_index ), input.inputs, group_values[i] ) elif isinstance( input, Conditional ): group_values = values[input.name] current_case = group_values['__current_case__'] - prefix = "%s|" % ( key ) - cleanup( prefix, input.cases[current_case].inputs, group_values ) + cleanup( "%s%s|" % ( prefix, key ), input.cases[current_case].inputs, group_values ) cleanup( "", inputs, values ) return associations
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
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