1 new commit in galaxy-central:
https://bitbucket.org/galaxy/galaxy-central/commits/eb7f1d35ad35/ Changeset: eb7f1d35ad35 User: james_taylor Date: 2013-03-26 18:04:36 Summary: biostar: pass slugified version of tool name as tag when sending to question form Affected #: 1 file
diff -r ac80dbfe7703102ff152760419361a55d3eb0f6f -r eb7f1d35ad35e2410393362b636039714c873b5e lib/galaxy/webapps/galaxy/controllers/biostar.py --- a/lib/galaxy/webapps/galaxy/controllers/biostar.py +++ b/lib/galaxy/webapps/galaxy/controllers/biostar.py @@ -8,16 +8,35 @@ from galaxy.util import json import hmac
+# Slugifying from Armin Ronacher (http://flask.pocoo.org/snippets/5/) + +import re +from unicodedata import normalize + +_punct_re = re.compile(r'[\t !"#$%&'()*-/<=>?@[\]^_`{|},.]+') + + +def slugify(text, delim=u'-'): + """Generates an slightly worse ASCII-only slug.""" + result = [] + for word in _punct_re.split(text.lower()): + word = normalize('NFKD', word).encode('ascii', 'ignore') + if word: + result.append(word) + return unicode(delim.join(result)) + + # Biostar requires all keys to be present, so we start with a template DEFAULT_PAYLOAD = { - 'email': "", - 'title': "Question about Galaxy", + 'email': "", + 'title': "Question about Galaxy", 'tags': 'galaxy', - 'tool_name': '', - 'tool_version': '', + 'tool_name': '', + 'tool_version': '', 'tool_id': '' }
+ def encode_data( key, data ): """ Encode data to send a question to Biostar @@ -28,6 +47,13 @@ return text, digest
+def tag_for_tool( tool ): + """ + Generate a reasonavle biostar tag for a tool. + """ + return slugify( unicode( tool.name ) ) + + class BiostarController( BaseUIController ): """ Provides integration with Biostar through external authentication, see: http://liondb.com/help/x/ @@ -81,6 +107,10 @@ if not tool: return error( "No tool found matching '%s'" % tool_id ) # Tool specific information for payload - payload = { 'title': "Question about Galaxy tool '%s'" % tool.name, 'tool_name': tool.name, 'tool_version': tool.version, 'tool_id': tool.id } + payload = { 'title': "Question about Galaxy tool '%s'" % tool.name, + 'tool_name': tool.name, + 'tool_version': tool.version, + 'tool_id': tool.id, + 'tags': 'galaxy ' + tag_for_tool( tool ) } # Pass on to regular question method return self.biostar_question_redirect( trans, payload ) \ No newline at end of file
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
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