1 new commit in galaxy-central:
https://bitbucket.org/galaxy/galaxy-central/commits/2accb50ef103/ Changeset: 2accb50ef103 User: greg Date: 2013-07-08 18:03:22 Summary: Fix for checking the Galaxy environment for missing migrated tools at server startup. Affected #: 1 file
diff -r afec613d77fa58ad0de7066a2d9b18daad8cdb88 -r 2accb50ef103b083f053c9550518d75c7527f706 lib/tool_shed/util/common_util.py --- a/lib/tool_shed/util/common_util.py +++ b/lib/tool_shed/util/common_util.py @@ -19,6 +19,7 @@ tool_shed_url = get_tool_shed_url_from_tools_xml_file_path( app, tool_shed ) # The default behavior is that the tool shed is down. tool_shed_accessible = False + missing_tool_configs_dict = odict() if tool_shed_url: for elem in root: if elem.tag == 'repository': @@ -48,7 +49,6 @@ migrated_tool_configs_dict[ tool_elem.get( 'file' ) ] = tool_dependencies if tool_shed_accessible: # Parse the proprietary tool_panel_configs (the default is tool_conf.xml) and generate the list of missing tool config file names. - missing_tool_configs_dict = odict() for tool_panel_config in tool_panel_configs: tree, error_message = xml_util.parse_xml( tool_panel_config ) if tree:
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
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