1 new changeset in galaxy-central:
http://bitbucket.org/galaxy/galaxy-central/changeset/ff7c8c0bef60/ changeset: ff7c8c0bef60 user: jgoecks date: 2011-09-02 14:57:55 summary: Fix bug in setting Cufflinks' reference annotation. affected #: 1 file (6 bytes)
--- a/tools/ngs_rna/cufflinks_wrapper.xml Thu Sep 01 14:01:00 2011 -0400 +++ b/tools/ngs_rna/cufflinks_wrapper.xml Fri Sep 02 08:57:55 2011 -0400 @@ -14,11 +14,11 @@ -j $pre_mrna_fraction
## Include reference annotation? - #if $reference_annotation.use_ref == "use reference annotation": + #if $reference_annotation.use_ref == "Use reference annotation": -G $reference_annotation.reference_annotation_file #end if - #if $reference_annotation.use_ref == "use reference annotation guide": - -g $reference_annotation_guide.reference_annotation_guide_file + #if $reference_annotation.use_ref == "Use reference annotation guide": + -g $reference_annotation.reference_annotation_guide_file #end if
## Set paired-end parameters? @@ -63,7 +63,7 @@ <when value="Use reference annotation"><param format="gff3,gtf" name="reference_annotation_file" type="data" label="Reference Aonnotation" help="Make sure your annotation file is in GTF format and that Galaxy knows that your file is GTF--not GFF."/></when> - <when value="Use reference annotation guide"> + <when value="Use reference annotation guide"><param format="gff3,gtf" name="reference_annotation_guide_file" type="data" label="Reference Aonnotation" help="Make sure your annotation file is in GTF format and that Galaxy knows that your file is GTF--not GFF."/></when></conditional>
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
--
This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.