1 new commit in galaxy-central:
https://bitbucket.org/galaxy/galaxy-central/changeset/44ae555b804b/ changeset: 44ae555b804b user: greg date: 2012-11-29 20:39:31 summary: More enhancements for hte tool shed functional test framework. affected #: 4 files
diff -r 17d6bfafebecd39dd42fd2377e1a5ce1e16e566a -r 44ae555b804bae7aa8170326ff37d5c0dc47be28 test/tool_shed/base/test_db_util.py --- a/test/tool_shed/base/test_db_util.py +++ b/test/tool_shed/base/test_db_util.py @@ -46,3 +46,9 @@ .filter( model.Repository.table.c.user_id==owner.id ) \ .first() return repository +def get_repository_metadata_by_repository_id_changeset_revision( repository_id, changeset_revision ): + repository_metadata = sa_session.query( model.RepositoryMetadata ) \ + .filter( and_( model.RepositoryMetadata.table.c.id == repository_id, + model.RepositoryMetadata.table.c.changeset_revision == changeset_revision ) ) \ + .first() + return repository_metadata
diff -r 17d6bfafebecd39dd42fd2377e1a5ce1e16e566a -r 44ae555b804bae7aa8170326ff37d5c0dc47be28 test/tool_shed/base/twilltestcase.py --- a/test/tool_shed/base/twilltestcase.py +++ b/test/tool_shed/base/twilltestcase.py @@ -1,13 +1,19 @@ from base.twilltestcase import * -import ConfigParser +from galaxy.webapps.community.util.hgweb_config import * +from test_db_util import * + +from galaxy import eggs +eggs.require('mercurial') +from mercurial import hg, ui
class ShedTwillTestCase( TwillTestCase ): def setUp( self ): # Security helper self.security = security.SecurityHelper( id_secret='changethisinproductiontoo' ) self.history_id = None - self.hgweb_config_manager = None self.hgweb_config_dir = os.environ.get( 'TEST_HG_WEB_CONFIG_DIR' ) + self.hgweb_config_manager = HgWebConfigManager() + self.hgweb_config_manager.hgweb_config_dir = self.hgweb_config_dir self.host = os.environ.get( 'TOOL_SHED_TEST_HOST' ) self.port = os.environ.get( 'TOOL_SHED_TEST_PORT' ) self.url = "http://%s:%s" % ( self.host, self.port ) @@ -35,7 +41,7 @@ def check_for_valid_tools( self, repository, strings_displayed=[], strings_not_displayed=[] ): strings_displayed.append( 'Valid tools' ) self.manage_repository( repository, strings_displayed, strings_not_displayed ) - def check_metadata_in_repository_changelog( self, repository, metadata_count ): + def check_count_of_metadata_revisions_associated_with_repository( self, repository, metadata_count ): self.check_repository_changelog( repository ) self.check_string_count_in_page( 'Repository metadata is associated with this change set.', metadata_count ) def check_repository_changelog( self, repository, strings_displayed=[], strings_not_displayed=[] ): @@ -43,9 +49,13 @@ self.visit_url( url ) self.check_for_strings( strings_displayed, strings_not_displayed ) def check_repository_metadata( self, repository, tip_only=True ): - assert self.tip_has_metadata( repository, tip_only ), \ - 'Repository tip is not a metadata revision: Repository tip - %s, metadata revisions - %s.' % \ - ( self.get_repository_tip( repository ), ', '.join( self.get_repository_metadata_revisions( repository ) ) ) + if tip_only: + assert self.tip_has_metadata( repository ) and len( self.get_repository_metadata_revisions( repository ) ) == 1, \ + 'Repository tip is not a metadata revision: Repository tip - %s, metadata revisions - %s.' + else: + assert len( self.get_repository_metadata_revisions( repository ) ) > 0, \ + 'Repository tip is not a metadata revision: Repository tip - %s, metadata revisions - %s.' % \ + ( self.get_repository_tip( repository ), ', '.join( self.get_repository_metadata_revisions( repository ) ) ) def check_repository_tools( self, repository, include_invalid=False ): ''' Loop through each repository_metadata dict in the repository object. @@ -73,12 +83,36 @@ if include_invalid and invalid_tool_list: for invalid_tool_dict in invalid_tool_list: for tool in invalid_tool_dict[ 'tools' ]: - tool_path = '%s/%s' % ( self.get_repository_filesystem_path( repository ), tool ) + tool_path = '%s/%s' % ( self.get_repo_path( repository ), tool ) self.load_display_tool_page( repository, tool_xml_path=tool_path, changeset_revision=changeset_revision, strings_displayed=[ 'properly loaded' ], strings_not_displayed=[] ) + def check_repository_tools_for_changeset_revision( self, repository, changeset_revision ): + ''' + Loop through each tool dictionary in the repository metadata associated with the received changeset_revision. + For each of these, check for a tools attribute, and load the tool metadata page if it exists, then display that tool's page. + ''' + repository_metadata = get_repository_metadata_by_repository_id_changeset_revision( repository.id, changeset_revision ) + metadata = repository_metadata.metadata + for tool_dict in metadata[ 'tools' ]: + metadata_strings_displayed = [ tool[ 'guid' ], + tool[ 'version' ], + tool[ 'id' ], + tool[ 'name' ], + tool[ 'description' ], + changeset_revision ] + url = '/repository/view_tool_metadata?repository_id=%s&changeset_revision=%s&tool_id=%s' % \ + ( self.security.encode_id( repository.id ), changeset_revision, tool[ 'id' ] ) + self.visit_url( url ) + self.check_for_strings( metadata_strings_displayed ) + self.load_display_tool_page( repository, tool_xml_path=tool[ 'tool_config' ], + changeset_revision=changeset_revision, + strings_displayed=[ '%s (version %s)' % ( tool[ 'name' ], tool[ 'version' ] ) ], + strings_not_displayed=[] ) + def check_repository_invalid_tools_for_changeset_revision( self, repository, changeset_revision ): + pass def check_string_count_in_page( self, pattern, min_count, max_count=None ): """Checks the number of 'pattern' occurrences in the current browser page""" page = self.last_page() @@ -202,15 +236,10 @@ def get_repo_path( self, repository ): # An entry in the hgweb.config file looks something like: repos/test/mira_assembler = database/community_files/000/repo_123 lhs = "repos/%s/%s" % ( repository.user.username, repository.name ) - hgweb_config = "%s/hgweb.config" % self.hgweb_config_dir - if not os.path.exists( hgweb_config ): - raise Exception( "Required file hgweb.config does not exist in directory %s" % self.hgweb_config_dir ) - config = ConfigParser.ConfigParser() - config.read( hgweb_config ) - for option in config.options( "paths" ): - if option == lhs: - return config.get( "paths", option ) - raise Exception( "Entry for repository %s missing in %s/hgweb.config file." % ( lhs, self.hgweb_config_dir ) ) + try: + return self.hgweb_config_manager.get_entry( lhs ) + except: + raise Exception( "Entry for repository %s missing in hgweb config file %s." % ( lhs, self.hgweb_config_manager.hgweb_config ) ) def get_repository_file_list( self, base_path, current_path=None ): '''Recursively load repository folder contents and append them to a list. Similar to os.walk but via /repository/open_folder.''' if current_path is None: @@ -247,15 +276,8 @@ def get_repository_metadata_revisions( self, repository ): return [ str( repository_metadata.changeset_revision ) for repository_metadata in repository.metadata_revisions ] def get_repository_tip( self, repository ): - self.browse_repository( repository ) - html = self.last_page() - revision_regex = re.search( 'revision ([0-9a-f]+) (repository tip)', html ) - if revision_regex is not None: - return revision_regex.group( 1 ) - return None - def get_repository_filesystem_path( self, repository ): - repo_subdirectory = '%03d' % int( repository.id / 1000 ) - return os.path.join( 'database', 'community_files', repo_subdirectory, 'repo_%d' % repository.id ) + repo = hg.repository( ui.ui(), self.get_repo_path( repository ) ) + return str( repo.changectx( repo.changelog.tip() ) ) def get_tools_from_repository_metadata( self, repository, include_invalid=False ): '''Get a list of valid and (optionally) invalid tool dicts from the repository metadata.''' valid_tools = [] @@ -296,12 +318,9 @@ tc.fv( "malicious", "malicious", set_malicious ) tc.submit( "malicious_button" ) self.check_for_strings( strings_displayed, strings_not_displayed ) - def tip_has_metadata( self, repository, tip_only=True ): + def tip_has_metadata( self, repository ): tip = self.get_repository_tip( repository ) - changeset_revisions = [ str( repository_metadata.changeset_revision ) for repository_metadata in repository.metadata_revisions ] - if tip_only: - return len( changeset_revisions ) == 1 and tip in changeset_revisions - return tip in changeset_revisions + return get_repository_metadata_by_repository_id_changeset_revision( repository.id, tip ) def upload_file( self, repository, filename,
diff -r 17d6bfafebecd39dd42fd2377e1a5ce1e16e566a -r 44ae555b804bae7aa8170326ff37d5c0dc47be28 test/tool_shed/functional/test_0000_basic_repository_features.py --- a/test/tool_shed/functional/test_0000_basic_repository_features.py +++ b/test/tool_shed/functional/test_0000_basic_repository_features.py @@ -66,7 +66,7 @@ repository = get_repository_by_name_and_owner( repository_name, admin_username ) latest_changeset_revision = self.get_repository_tip( repository ) self.check_for_valid_tools( repository, strings_displayed=[ 'Filter1' ] ) - self.check_metadata_in_repository_changelog( repository, metadata_count=1 ) + self.check_count_of_metadata_revisions_associated_with_repository( repository, metadata_count=1 ) self.check_repository_tools( repository ) self.check_repository_metadata( repository, tip_only=False ) self.browse_repository( repository, strings_displayed=[ 'Browse %s revision' % repository.name, '(repository tip)' ] ) @@ -128,7 +128,7 @@ self.check_for_valid_tools( repository ) strings_displayed = self.get_repository_metadata_revisions( repository ).append( 'Select a revision' ) self.manage_repository( repository, strings_displayed=strings_displayed ) - self.check_metadata_in_repository_changelog( repository, metadata_count=2 ) + self.check_count_of_metadata_revisions_associated_with_repository( repository, metadata_count=2 ) self.check_repository_tools( repository, include_invalid=False ) self.check_repository_metadata( repository, tip_only=False ) def test_0070_upload_readme_txt_file( self ): @@ -146,7 +146,7 @@ '''Delete the readme.txt file.''' repository = get_repository_by_name_and_owner( repository_name, admin_username ) self.delete_files_from_repository( repository, filenames=[ 'readme.txt' ] ) - self.check_metadata_in_repository_changelog( repository, metadata_count=2 ) + self.check_count_of_metadata_revisions_associated_with_repository( repository, metadata_count=2 ) # Deleting a readme file for a specific revision should make the repository fall back # to a previous revision's readme file, if one exists. # TODO: All readme files should be displayed.
diff -r 17d6bfafebecd39dd42fd2377e1a5ce1e16e566a -r 44ae555b804bae7aa8170326ff37d5c0dc47be28 test/tool_shed/functional_tests.py --- a/test/tool_shed/functional_tests.py +++ b/test/tool_shed/functional_tests.py @@ -270,7 +270,7 @@ for dir in [ tool_shed_test_tmp_dir ]: if os.path.exists( dir ): log.info( "Cleaning up temporary files in %s" % dir ) - shutil.rmtree( dir ) + #shutil.rmtree( dir ) except: pass if success:
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
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