1 new changeset in galaxy-central:
http://bitbucket.org/galaxy/galaxy-central/changeset/9bcf6ac08839/ changeset: r5136:9bcf6ac08839 user: jgoecks date: 2011-02-27 20:48:23 summary: Suppress most logging for cufflinks and cuffdiff as the logging can generate output that is incompatible with UTF-8 format used by database. affected #: 2 files (136 bytes)
--- a/tools/ngs_rna/cuffdiff_wrapper.py Sat Feb 26 13:12:44 2011 -0500 +++ b/tools/ngs_rna/cuffdiff_wrapper.py Sun Feb 27 14:48:23 2011 -0500 @@ -135,8 +135,8 @@
# Build command.
- # Base. - cmd = "cuffdiff" + # Base; always use quiet mode to avoid problems with storing log output. + cmd = "cuffdiff -q"
# Add options. if options.inner_dist_std_dev:
--- a/tools/ngs_rna/cufflinks_wrapper.py Sat Feb 26 13:12:44 2011 -0500 +++ b/tools/ngs_rna/cufflinks_wrapper.py Sun Feb 27 14:48:23 2011 -0500 @@ -84,8 +84,8 @@
# Build command.
- # Base. - cmd = "cufflinks" + # Base; always use quiet mode to avoid problems with storing log output. + cmd = "cufflinks -q"
# Add options. if options.inner_dist_std_dev:
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
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