1 new commit in galaxy-central:
https://bitbucket.org/galaxy/galaxy-central/changeset/1b3c54debe58/ changeset: 1b3c54debe58 user: natefoo date: 2011-12-09 20:56:58 summary: Object Store: Create datasets when accessed via file_name. affected #: 3 files
diff -r 25f3c2c08e97dc2b8d5ea2885d5083b887c65fba -r 1b3c54debe5813a6a6b91ab1cd3581f489d09abb lib/galaxy/exceptions/__init__.py --- a/lib/galaxy/exceptions/__init__.py +++ b/lib/galaxy/exceptions/__init__.py @@ -18,3 +18,7 @@
class ItemOwnershipException( MessageException ): pass + +class ObjectNotFound( Exception ): + """ Accessed object was not found """ + pass
diff -r 25f3c2c08e97dc2b8d5ea2885d5083b887c65fba -r 1b3c54debe5813a6a6b91ab1cd3581f489d09abb lib/galaxy/model/__init__.py --- a/lib/galaxy/model/__init__.py +++ b/lib/galaxy/model/__init__.py @@ -16,6 +16,7 @@ from galaxy.util.hash_util import * from galaxy.web.form_builder import * from galaxy.model.item_attrs import UsesAnnotations, APIItem +from galaxy.exceptions import ObjectNotFound from sqlalchemy.orm import object_session from sqlalchemy.sql.expression import func import os.path, os, errno, codecs, operator, socket, pexpect, logging, time, shutil @@ -649,10 +650,12 @@ if not self.external_filename: assert self.id is not None, "ID must be set before filename used (commit the object)" assert self.object_store is not None, "Object Store has not been initialized for dataset %s" % self.id - filename = self.object_store.get_filename( self.id ) - if not self.object_store.exists( self.id ): - # Create directory if it does not exist - self.object_store.create( self.id, dir_only=True ) + try: + filename = self.object_store.get_filename( self.id ) + except ObjectNotFound, e: + # Create file if it does not exist + self.object_store.create( self.id ) + filename = self.object_store.get_filename( self.id ) return filename else: filename = self.external_filename
diff -r 25f3c2c08e97dc2b8d5ea2885d5083b887c65fba -r 1b3c54debe5813a6a6b91ab1cd3581f489d09abb lib/galaxy/objectstore/__init__.py --- a/lib/galaxy/objectstore/__init__.py +++ b/lib/galaxy/objectstore/__init__.py @@ -18,6 +18,7 @@ from galaxy.jobs import Sleeper from galaxy.model import directory_hash_id from galaxy.objectstore.s3_multipart_upload import multipart_upload +from galaxy.exceptions import ObjectNotFound
from boto.s3.key import Key from boto.s3.connection import S3Connection @@ -27,11 +28,6 @@ logging.getLogger('boto').setLevel(logging.INFO) # Otherwise boto is quite noisy
-class ObjectNotFound(Exception): - """ Accessed object was not found """ - pass - - class ObjectStore(object): """ ObjectStore abstract interface
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
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