[galaxy-commits] commit/galaxy-central: jgoecks: Make BAM_to_SAM tool write temporary files to job working directory rather than generic temp space.

1 new commit in galaxy-central:

https://bitbucket.org/galaxy/galaxy-central/commits/a13a9bce1c09/ Changeset: a13a9bce1c09 User: jgoecks Date: 2013-07-03 16:39:02 Summary: Make BAM_to_SAM tool write temporary files to job working directory rather than generic temp space. Affected #: 1 file

diff -r ebe87051fadff5750ec226490b31e49bdd68b070 -r a13a9bce1c09319b0c18f287d17cbc2a7cd544ed tools/samtools/bam_to_sam.py --- a/tools/samtools/bam_to_sam.py +++ b/tools/samtools/bam_to_sam.py @@ -43,7 +43,7 @@ except: sys.stdout.write( 'Could not determine Samtools version\n' )

- tmp_dir = tempfile.mkdtemp() + tmp_dir = tempfile.mkdtemp( dir='.' )

try: # exit if input file empty

Repository URL: https://bitbucket.org/galaxy/galaxy-central/

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