1 new commit in galaxy-central:
https://bitbucket.org/galaxy/galaxy-central/changeset/98f47fbe0a4f/ changeset: 98f47fbe0a4f user: jgoecks date: 2012-04-23 21:29:37 summary: Update Trinity wrapper to support most recent versions. affected #: 1 file
diff -r 6d551feac6c0780979a1ce551a5430990473d864 -r 98f47fbe0a4f289e7078d5f0aab1c03caeeedf49 tools/ngs_rna/trinity_all.xml --- a/tools/ngs_rna/trinity_all.xml +++ b/tools/ngs_rna/trinity_all.xml @@ -1,5 +1,5 @@ <tool id="trinity_all" name="Trinity" version="0.0.1"> - <!-- Run all steps of Trinity-Inchworm, Chrysalis, and Butterfly-in a single step. Wrapper status is alpha. --> + <!-- Supports Trinity r2012-04-22-beta and perhaps a few versions earlier. Wrapper is alpha status. --><description>De novo assembly of RNA-Seq data</description><requirements><requirement type="package">trinity</requirement> @@ -35,8 +35,10 @@ #end if #end if
+ --kmer_method meryl + ## CPU and butterfly options. - --CPU 4 --run_butterfly --bfly_opts "-V 10 --stderr" > $trinity_log 2>&1 + --CPU 4 --bfly_opts "-V 10 --stderr" > $trinity_log 2>&1 </command><inputs><conditional name="inputs">
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
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