1 new commit in galaxy-central:
https://bitbucket.org/galaxy/galaxy-central/commits/069b1c6c5f67/ Changeset: 069b1c6c5f67 User: jmchilton Date: 2014-12-29 16:48:38+00:00 Summary: Bugfix: Apply tool panel filtering in workflow editor. Bug originally reported by Eric here - http://dev.list.galaxyproject.org/Bug-Toolbox-filters-not-applied-in-workflo... (though this only fixes the superficial bug of them showing up in the workflow editor - and does not yet implement "strong" toolbox filters as requested).
This is actually a broader change that centralizes logic for listing out tool panel contents when displaying components to the user and the added filtering comes about from that. It also eliminates the last places Galaxy was accessing toolbox.tool_panel directly (in those mako templates). Affected #: 4 files
diff -r ad5094376c1042a3c5aeab793e326cebcc9818b9 -r 069b1c6c5f67e74c88d8109ba89cb52ed28deee4 lib/galaxy/tools/__init__.py --- a/lib/galaxy/tools/__init__.py +++ b/lib/galaxy/tools/__init__.py @@ -1147,24 +1147,22 @@ """ return self.app.model.context
+ def tool_panel_contents( self, trans, **kwds ): + """ Filter tool_panel contents for displaying for user. + """ + context = Bunch( toolbox=self, trans=trans ) + filters = self.filter_factory.build_filters( trans ) + for elt in self.tool_panel.itervalues(): + elt = _filter_for_panel( elt, filters, context ) + if elt: + yield elt + def to_dict( self, trans, in_panel=True, **kwds ): """ to_dict toolbox. """ - - context = Bunch( toolbox=self, trans=trans, **kwds ) if in_panel: - panel_elts = [ val for val in self.tool_panel.itervalues() ] - - filters = self.filter_factory.build_filters( trans, **kwds ) - - filtered_panel_elts = [] - for index, elt in enumerate( panel_elts ): - elt = _filter_for_panel( elt, filters, context ) - if elt: - filtered_panel_elts.append( elt ) - panel_elts = filtered_panel_elts - + panel_elts = list( self.tool_panel_contents( trans, **kwds ) ) # Produce panel. rval = [] kwargs = dict(
diff -r ad5094376c1042a3c5aeab793e326cebcc9818b9 -r 069b1c6c5f67e74c88d8109ba89cb52ed28deee4 templates/admin/package_tool.mako --- a/templates/admin/package_tool.mako +++ b/templates/admin/package_tool.mako @@ -26,7 +26,7 @@ Tool to bundle: </label><select name="tool_id"> - %for key, val in toolbox.tool_panel.items(): + %for val in toolbox.tool_panel_contents( trans ): %if isinstance( val, Tool ): <option value="${val.id|h}">${val.name|h}</option> %elif isinstance( val, ToolSection ):
diff -r ad5094376c1042a3c5aeab793e326cebcc9818b9 -r 069b1c6c5f67e74c88d8109ba89cb52ed28deee4 templates/admin/reload_tool.mako --- a/templates/admin/reload_tool.mako +++ b/templates/admin/reload_tool.mako @@ -26,7 +26,7 @@ Tool to reload: </label><select name="tool_id"> - %for key, val in toolbox.tool_panel.items(): + %for val in toolbox.tool_panel_contents( trans ): %if isinstance( val, Tool ): <option value="${val.id}">${val.name|h}</option> %elif isinstance( val, ToolSection ):
diff -r ad5094376c1042a3c5aeab793e326cebcc9818b9 -r 069b1c6c5f67e74c88d8109ba89cb52ed28deee4 templates/webapps/galaxy/workflow/editor.mako --- a/templates/webapps/galaxy/workflow/editor.mako +++ b/templates/webapps/galaxy/workflow/editor.mako @@ -284,7 +284,7 @@ <img src="${h.url_for('/static/images/loading_small_white_bg.gif')}" id="search-spinner" class="search-spinner" /></div><div class="toolSectionList"> - %for key, val in app.toolbox.tool_panel.items(): + %for val in app.toolbox.tool_panel_contents( trans ): <div class="toolSectionWrapper"> %if isinstance( val, Tool ): ${render_tool( val, False )}
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
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