1 new commit in galaxy-central:
https://bitbucket.org/galaxy/galaxy-central/commits/b483d9df129c/ Changeset: b483d9df129c User: davebgx Date: 2014-05-14 21:19:48 Summary: Fix missing imports, add self.app in a few more places. Affected #: 1 file
diff -r c0832d30e315c24dcc2cf23918e4b0bd7b30ba56 -r b483d9df129c00480fc72253a277de18ab67b27d lib/tool_shed/galaxy_install/tool_migration_manager.py --- a/lib/tool_shed/galaxy_install/tool_migration_manager.py +++ b/lib/tool_shed/galaxy_install/tool_migration_manager.py @@ -19,6 +19,8 @@ from tool_shed.util import tool_dependency_util from tool_shed.util import tool_util from tool_shed.util import xml_util +from tool_shed.galaxy_install.install_manager import InstallManager +from tool_shed.galaxy_install.tool_dependencies.recipe.recipe_manager import TagManager from galaxy.util.odict import odict
log = logging.getLogger( __name__ ) @@ -497,12 +499,12 @@ tool_dependency, error_message, remove_installation_path=False ) - if tool_dependency and tool_dependency.status in [ app.install_model.ToolDependency.installation_status.INSTALLED, - app.install_model.ToolDependency.installation_status.ERROR ]: + if tool_dependency and tool_dependency.status in [ self.app.install_model.ToolDependency.installation_status.INSTALLED, + self.app.install_model.ToolDependency.installation_status.ERROR ]: installed_tool_dependencies.append( tool_dependency ) - if app.config.manage_dependency_relationships: + if self.app.config.manage_dependency_relationships: # Add the tool_dependency to the in-memory dictionaries in the installed_repository_manager. - app.installed_repository_manager.handle_tool_dependency_install( tool_shed_repository, tool_dependency ) + self.app.installed_repository_manager.handle_tool_dependency_install( tool_shed_repository, tool_dependency ) for installed_tool_dependency in installed_tool_dependencies: if installed_tool_dependency.status == self.app.install_model.ToolDependency.installation_status.ERROR: print '\nThe ToolMigrationManager returned the following error while installing tool dependency ', installed_tool_dependency.name, ':'
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
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