1 new commit in galaxy-central:
https://bitbucket.org/galaxy/galaxy-central/changeset/28b3364341b6/ changeset: 28b3364341b6 user: greg date: 2012-07-13 16:15:49 summary: Fix for transferring datasets in sample tracking. affected #: 1 file
diff -r 67927f25d781f7cd1fc431f992b3bd02829c3854 -r 28b3364341b66ae9e3628d965db31c8dc3c57bfd lib/galaxy/web/controllers/requests_common.py --- a/lib/galaxy/web/controllers/requests_common.py +++ b/lib/galaxy/web/controllers/requests_common.py @@ -104,13 +104,15 @@ if ids is not None and states is not None: ids = map( int, ids.split( "," ) ) states = states.split( "," ) - for id, state in zip( ids, states ): - sample = trans.sa_session.query( self.app.model.Sample ).get( id ) - if sample.state.name != state: - rval[ id ] = { "state": sample.state.name, - "html_state": unicode( trans.fill_template( "requests/common/sample_state.mako", - sample=sample), - 'utf-8' ) } + for tup in zip( ids, states ): + id, state = tup + if id and state: + sample = trans.sa_session.query( self.app.model.Sample ).get( id ) + if sample.state.name != state: + rval[ id ] = { "state": sample.state.name, + "html_state": unicode( trans.fill_template( "requests/common/sample_state.mako", + sample=sample), + 'utf-8' ) } return rval @web.json def sample_datasets_updates( self, trans, ids=None, datasets=None ): @@ -121,14 +123,16 @@ rval = {} if ids is not None and datasets is not None: ids = map( int, ids.split( "," ) ) - number_of_datasets_list = map(int, datasets.split( "," ) ) - for id, number_of_datasets in zip( ids, number_of_datasets_list ): - sample = trans.sa_session.query( self.app.model.Sample ).get( id ) - if len(sample.datasets) != number_of_datasets: - rval[ id ] = { "datasets": len( sample.datasets ), - "html_datasets": unicode( trans.fill_template( "requests/common/sample_datasets.mako", - sample=sample), - 'utf-8' ) } + number_of_datasets_list = map( int, datasets.split( "," ) ) + for tup in zip( ids, number_of_datasets_list ): + id, number_of_datasets = tup + if id and number_of_datasets: + sample = trans.sa_session.query( self.app.model.Sample ).get( id ) + if len( sample.datasets ) != number_of_datasets: + rval[ id ] = { "datasets": len( sample.datasets ), + "html_datasets": unicode( trans.fill_template( "requests/common/sample_datasets.mako", + sample=sample), + 'utf-8' ) } return rval @web.json def dataset_transfer_status_updates( self, trans, ids=None, transfer_status_list=None ): @@ -140,13 +144,15 @@ if ids is not None and transfer_status_list is not None: ids = ids.split( "," ) transfer_status_list = transfer_status_list.split( "," ) - for id, transfer_status in zip( ids, transfer_status_list ): - sample_dataset = trans.sa_session.query( self.app.model.SampleDataset ).get( trans.security.decode_id( id ) ) - if sample_dataset.status != transfer_status: - rval[ id ] = { "status": sample_dataset.status, - "html_status": unicode( trans.fill_template( "requests/common/sample_dataset_transfer_status.mako", - sample_dataset=sample_dataset), - 'utf-8' ) } + for tup in zip( ids, transfer_status_list ): + id, transfer_status = tup + if id and transfer_status: + sample_dataset = trans.sa_session.query( self.app.model.SampleDataset ).get( trans.security.decode_id( id ) ) + if sample_dataset.status != transfer_status: + rval[ id ] = { "status": sample_dataset.status, + "html_status": unicode( trans.fill_template( "requests/common/sample_dataset_transfer_status.mako", + sample_dataset=sample_dataset), + 'utf-8' ) } return rval @web.expose @web.require_login( "create sequencing requests" )
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
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