[galaxy-commits] commit/galaxy-central: carlfeberhard: HDA API, show: remove force_history_refresh, add annotation; update: allow annotation or genome_build == None; Users API: add 'tags_used' as list of unique tags used by the user; History panel tags & annotations: into Backbone sub-views, cleanup; pack scripts

1 new commit in galaxy-central:

https://bitbucket.org/galaxy/galaxy-central/commits/599706931211/ Changeset: 599706931211 User: carlfeberhard Date: 2013-11-05 21:32:07 Summary: HDA API, show: remove force_history_refresh, add annotation; update: allow annotation or genome_build == None; Users API: add 'tags_used' as list of unique tags used by the user; History panel tags & annotations: into Backbone sub-views, cleanup; pack scripts Affected #: 33 files

diff -r 9493825685ee557c4a33b37614b22c4c21463219 -r 59970693121175aacf9d9ca75f012104d7e5db08 lib/galaxy/model/__init__.py --- a/lib/galaxy/model/__init__.py +++ b/lib/galaxy/model/__init__.py @@ -1751,6 +1751,7 @@ misc_info = hda.info, misc_blurb = hda.blurb )

+ # add tags string list tags_str_list = [] for tag in self.tags: tag_str = tag.user_tname

diff -r 9493825685ee557c4a33b37614b22c4c21463219 -r 59970693121175aacf9d9ca75f012104d7e5db08 lib/galaxy/web/base/controller.py --- a/lib/galaxy/web/base/controller.py +++ b/lib/galaxy/web/base/controller.py @@ -596,6 +596,8 @@ return self.get_inaccessible_hda_dict( trans, hda ) hda_dict[ 'accessible' ] = True

+ hda_dict[ 'annotation' ] = hda.get_item_annotation_str( trans.sa_session, trans.user, hda ) + # ---- return here if deleted AND purged OR can't access purged = ( hda.purged or hda.dataset.purged ) if ( hda.deleted and purged ): @@ -632,14 +634,6 @@ if hda.deleted and not purged: return trans.security.encode_dict_ids( hda_dict )

- # if a tool declares 'force_history_refresh' in its xml, when the hda -> ready, reload the history panel - # expensive - #if( ( hda.state in [ 'running', 'queued' ] ) - #and ( hda.creating_job and hda.creating_job.tool_id ) ): - # tool_used = trans.app.toolbox.get_tool( hda.creating_job.tool_id ) - # if tool_used and tool_used.force_history_refresh: - # hda_dict[ 'force_history_refresh' ] = True - return trans.security.encode_dict_ids( hda_dict )

def get_inaccessible_hda_dict( self, trans, hda ):

diff -r 9493825685ee557c4a33b37614b22c4c21463219 -r 59970693121175aacf9d9ca75f012104d7e5db08 lib/galaxy/webapps/galaxy/api/histories.py --- a/lib/galaxy/webapps/galaxy/api/histories.py +++ b/lib/galaxy/webapps/galaxy/api/histories.py @@ -361,7 +361,7 @@ if not isinstance( val, bool ): raise ValueError( 'published must be a boolean: %s' %( str( type( val ) ) ) ) validated_payload[ 'published' ] = val - elif key == 'genome_build': + elif key == 'genome_build' and val is not None: if not ( isinstance( val, str ) or isinstance( val, unicode ) ): raise ValueError( 'genome_build must be a string: %s' %( str( type( val ) ) ) ) validated_payload[ 'genome_build' ] = sanitize_html( val, 'utf-8' )

diff -r 9493825685ee557c4a33b37614b22c4c21463219 -r 59970693121175aacf9d9ca75f012104d7e5db08 lib/galaxy/webapps/galaxy/api/history_contents.py --- a/lib/galaxy/webapps/galaxy/api/history_contents.py +++ b/lib/galaxy/webapps/galaxy/api/history_contents.py @@ -406,7 +406,7 @@ if not ( isinstance( val, str ) or isinstance( val, unicode ) ): raise ValueError( 'genome_build must be a string: %s' %( str( type( val ) ) ) ) validated_payload[ 'dbkey' ] = util.sanitize_html.sanitize_html( val, 'utf-8' ) - elif key == 'annotation': + elif key == 'annotation' and val is not None: if not ( isinstance( val, str ) or isinstance( val, unicode ) ): raise ValueError( 'annotation must be a string or unicode: %s' %( str( type( val ) ) ) ) validated_payload[ 'annotation' ] = util.sanitize_html.sanitize_html( val, 'utf-8' )

diff -r 9493825685ee557c4a33b37614b22c4c21463219 -r 59970693121175aacf9d9ca75f012104d7e5db08 lib/galaxy/webapps/galaxy/api/users.py --- a/lib/galaxy/webapps/galaxy/api/users.py +++ b/lib/galaxy/webapps/galaxy/api/users.py @@ -71,6 +71,8 @@ raise HTTPBadRequest( detail='Invalid user id ( %s ) specified' % id ) item = user.to_dict( view='element', value_mapper={ 'id': trans.security.encode_id, 'total_disk_usage': float } ) + + # add a list of tags used by the user (as strings) item[ 'tags_used' ] = self.get_user_tags_used( trans, user=user ) #TODO: move into api_values (needs trans, tho - can we do that with api_keys/@property??) #TODO: works with other users (from admin)??

diff -r 9493825685ee557c4a33b37614b22c4c21463219 -r 59970693121175aacf9d9ca75f012104d7e5db08 static/scripts/mvc/annotations.js --- a/static/scripts/mvc/annotations.js +++ b/static/scripts/mvc/annotations.js @@ -1,35 +1,71 @@ -/*============================================================================== -Backbone MV for Annotations +/** A view on any model that has a 'annotation' attribute + */ +var AnnotationEditor = BaseView.extend( LoggableMixin ).extend( HiddenUntilActivatedViewMixin ).extend({

+ tagName : 'div', + className : 'annotation-display',

-TODO: + /** Set up listeners, parse options */ + initialize : function( options ){ + options = options || {}; + this.tooltipConfig = options.tooltipConfig || { placement: 'bottom' }; + //console.debug( this, options ); + // only listen to the model only for changes to annotations + this.listenTo( this.model, 'change:annotation', function(){ + this.render(); + }); + this.hiddenUntilActivated( options.$activator, options ); + },

-==============================================================================*/ -/** Single Tag model - */ -var Annotation = BaseModel.extend( LoggableMixin ).extend({ - - // uncomment this out see log messages - logger : console, - - toString : function(){ - return 'Annotation()'; - } + /** Build the DOM elements, call select to on the created input, and set up behaviors */ + render : function(){ + var view = this; + this.$el.html( this._template() ); + this.$el.find( "[title]" ).tooltip( this.tooltipConfig ); + + //TODO: handle empties better + this.$annotation().make_text_editable({ + use_textarea: true, + on_finish: function( newAnnotation ){ + view.$annotation().text( newAnnotation ); + view.model.save({ annotation: newAnnotation }, { silent: true }) + .fail( function(){ + view.$annotation().text( view.model.previous( 'annotation' ) ); + }); + } + }); + return this; + }, + + /** @returns {String} the html text used to build the view's DOM */ + _template : function(){ + var annotation = this.model.get( 'annotation' ); + //if( !annotation ){ + // //annotation = [ '<em class="annotation-empty">', _l( 'Click to add an annotation' ), '</em>' ].join( '' ); + // annotation = [ '<em class="annotation-empty"></em>' ].join( '' ); + //} + return [ + //TODO: make prompt optional + '<label class="prompt">', _l( 'Annotation' ), '</label>', + // set up initial tags by adding as CSV to input vals (necc. to init select2) + '<div class="annotation" title="', _l( 'Edit annotation' ), '">', + annotation, + '</div>' + ].join( '' ); + }, + + /** @returns {jQuery} the main element for this view */ + $annotation : function(){ + return this.$el.find( '.annotation' ); + }, + + /** shut down event listeners and remove this view's DOM */ + remove : function(){ + this.$annotation.off(); + this.stopListening( this.model ); + Backbone.View.prototype.remove.call( this ); + }, + + /** string rep */ + toString : function(){ return [ 'AnnotationEditor(', this.model + '', ')' ].join(''); } }); - -//------------------------------------------------------------------------------ -/** Single Tag view - */ -var AnnotationView = BaseView.extend( LoggableMixin ).extend({ - - // uncomment this out see log messages - logger : console, - - toString : function(){ - return 'AnnotationView()'; - } -}); - -//============================================================================== -/** YAGNI? A collection of Annotations, mainView? - */

diff -r 9493825685ee557c4a33b37614b22c4c21463219 -r 59970693121175aacf9d9ca75f012104d7e5db08 static/scripts/mvc/base-mvc.js --- a/static/scripts/mvc/base-mvc.js +++ b/static/scripts/mvc/base-mvc.js @@ -219,6 +219,51 @@

//============================================================================== +var HiddenUntilActivatedViewMixin = /** @lends hiddenUntilActivatedMixin# */{ + + /** */ + hiddenUntilActivated : function( $activator, options ){ + // call this in your view's initialize fn + options = options || {}; + this.HUAVOptions = { + $elementShown : this.$el, + showFn : jQuery.prototype.toggle, + showSpeed : 'fast' + }; + _.extend( this.HUAVOptions, options || {}); + this.HUAVOptions.hasBeenShown = this.HUAVOptions.$elementShown.is( ':visible' ); + + if( $activator ){ + var mixin = this; + $activator.on( 'click', function( ev ){ + mixin.toggle( mixin.HUAVOptions.showSpeed ); + }); + } + }, + + /** */ + toggle : function(){ + // can be called manually as well with normal toggle arguments + if( this.HUAVOptions.$elementShown.is( ':hidden' ) ){ + // fire the optional fns on the first/each showing - good for render() + if( !this.HUAVOptions.hasBeenShown ){ + if( _.isFunction( this.HUAVOptions.onshowFirstTime ) ){ + this.HUAVOptions.hasBeenShown = true; + this.HUAVOptions.onshowFirstTime.call( this ); + } + } else { + if( _.isFunction( this.HUAVOptions.onshow ) ){ + this.HUAVOptions.onshow.call( this ); + } + } + } + return this.HUAVOptions.showFn.apply( this.HUAVOptions.$elementShown, arguments ); + } +}; + + + +//============================================================================== function LoadingIndicator( $where, options ){ options = options || {}; var self = this;

diff -r 9493825685ee557c4a33b37614b22c4c21463219 -r 59970693121175aacf9d9ca75f012104d7e5db08 static/scripts/mvc/dataset/hda-base.js --- a/static/scripts/mvc/dataset/hda-base.js +++ b/static/scripts/mvc/dataset/hda-base.js @@ -180,8 +180,6 @@ }); }; } - //return new IconButtonView({ model : new IconButton( displayBtnData ) }).render().$el; - displayBtnData.faIcon = 'fa-eye'; return faIconButton( displayBtnData ); }, @@ -199,7 +197,6 @@ // return either: a single download icon-button (if there are no meta files) if( _.isEmpty( meta_files ) ){ return $([ - //'<a href="', urls.download, '" title="', _l( 'Download' ), '" class="icon-button disk"></a>' '<a href="' + urls.download + '" title="' + _l( 'Download' ) + '" class="icon-btn">', '<span class="fa fa-floppy-o"></span>', '</a>' @@ -207,7 +204,7 @@ }

// or a popupmenu with links to download assoc. meta files (if there are meta files) -//TODO: Popupmenu + //TODO: Popupmenu var menuId = 'dataset-' + this.model.get( 'id' ) + '-popup', html = [ '<div popupmenu="' + menuId + '">', @@ -240,12 +237,6 @@ */ _render_showParamsButton : function(){ // gen. safe to show in all cases - //return new IconButtonView({ model : new IconButton({ - // title : _l( 'View details' ), - // href : this.urls.show_params, - // target : 'galaxy_main', - // icon_class : 'information' - //}) }).render().$el; return faIconButton({ title : _l( 'View details' ), href : this.urls.show_params, @@ -339,8 +330,10 @@

/** Render an HDA whose job has failed. */ _render_body_error : function(){ - var html = _l( 'An error occurred with this dataset' ) - + ': <i>' + $.trim( this.model.get( 'misc_info' ) ) + '</i>'; + var html = [ + '<span class="help-text">', _l( 'An error occurred with this dataset' ), ':</span>', + '<div class="job-error-text">', $.trim( this.model.get( 'misc_info' ) ), '</div>' + ].join( '' ); if( !this.model.get( 'purged' ) ){ html = '<div>' + this.model.get( 'misc_blurb' ) + '</div>' + html; }

diff -r 9493825685ee557c4a33b37614b22c4c21463219 -r 59970693121175aacf9d9ca75f012104d7e5db08 static/scripts/mvc/dataset/hda-edit.js --- a/static/scripts/mvc/dataset/hda-edit.js +++ b/static/scripts/mvc/dataset/hda-edit.js @@ -86,10 +86,6 @@ editBtnData.disabled = true; editBtnData.title = _l( 'This dataset must finish uploading before it can be edited' ); } - - - //return new IconButtonView({ model : new IconButton( editBtnData ) }).render().$el; - editBtnData.faIcon = 'fa-pencil'; return faIconButton( editBtnData ); }, @@ -124,8 +120,6 @@ enabled : false }; } - //return new IconButtonView({ model : new IconButton( deleteBtnData ) }).render().$el; - deleteBtnData.faIcon = 'fa-times'; return faIconButton( deleteBtnData ); }, @@ -138,14 +132,6 @@ if( this.model.get( 'state' ) !== hdaModel.HistoryDatasetAssociation.STATES.ERROR ){ return null; } - - //return new IconButtonView({ model : new IconButton({ - // title : _l( 'View or report this error' ), - // href : this.urls.report_error, - // target : 'galaxy_main', - // icon_class : 'bug' - //})}).render().$el; - return faIconButton({ title : _l( 'View or report this error' ), href : this.urls.report_error, @@ -158,13 +144,6 @@ * @returns {jQuery} rendered DOM */ _render_rerunButton : function(){ - //return new IconButtonView({ model : new IconButton({ - // title : _l( 'Run this job again' ), - // href : this.urls.rerun, - // target : 'galaxy_main', - // icon_class : 'arrow-circle' - //}) }).render().$el; - return faIconButton({ title : _l( 'Run this job again' ), href : this.urls.rerun, @@ -204,15 +183,6 @@ // Add dbkey to params if it exists. if( dbkey ){ params.dbkey = dbkey; }

- // render the icon from template - //var visualizationsButton = new IconButtonView({ model : new IconButton({ - // title : _l( 'Visualize' ), - // href : this.urls.visualization, - // icon_class : 'chart_curve' - //})}); - //var $icon = visualizationsButton.render().addClass( 'visualize-icon' ); // needed? - ////return visualizationsButton.render().$el; - var $icon = faIconButton({ title : _l( 'Visualize' ), href : this.urls.visualization, @@ -264,13 +234,6 @@ || !( visualizations && !_.isEmpty( visualizations ) ) ){ return null; } - - // render the icon from template - //var visualizationsButton = new IconButtonView({ model : new IconButton({ - // title : _l( 'Visualize' ), - // icon_class : 'chart_curve' - //})}); - //var $icon = visualizationsButton.render().$el; var $icon = faIconButton({ title : _l( 'Visualize' ), faIcon : 'fa-bar-chart-o' @@ -293,49 +256,6 @@ return $icon; },

- // ......................................................................... secondary actions - /** Render icon-button to load and display tagging html. - * @returns {jQuery} rendered DOM - */ - _render_tagButton : function(){ - if( !this.hasUser ){ - return null; - } - - //return new IconButtonView({ model : new IconButton({ - // title : _l( 'Edit dataset tags' ), - // target : 'galaxy_main', - // href : this.urls.tags.get, - // icon_class : 'tags' - //})}).render().$el; - - return faIconButton({ - title : _l( 'Edit dataset tags' ), - classes : 'dataset-tag-btn', - faIcon : 'fa-tags' - }); - }, - - /** Render icon-button to load and display annotation html. - * @returns {jQuery} rendered DOM - */ - _render_annotateButton : function(){ - if( !this.hasUser ){ - return null; - } - - //return new IconButtonView({ model : new IconButton({ - // title : _l( 'Edit dataset annotation' ), - // target : 'galaxy_main', - // icon_class : 'annotate' - //})}).render().$el; - return faIconButton({ - title : _l( 'Edit dataset annotation' ), - classes : 'dataset-annotate-btn', - faIcon : 'fa-comment' - }); - }, - // ......................................................................... state body renderers /** Render an HDA where the metadata wasn't produced correctly. * Overridden to add a link to dataset/edit @@ -375,16 +295,37 @@ this.makeDbkeyEditLink( $body );

// more actions/buttons - $body.find( '.dataset-actions .left' ).append( this._render_visualizationsButton() ); - $body.find( '.dataset-actions .right' ).append([ - this._render_tagButton(), - this._render_annotateButton() - ]); + if( this.hasUser ){ + $body.find( '.dataset-actions .left' ).append( this._render_visualizationsButton() ); + this._renderTags( $body ); + this._renderAnnotation( $body ); + } + return $body; + }, + + _renderTags : function( $where ){ this.tagsEditor = new TagsEditor({ - model : this.model, - el : $body.find( '.tags-display' ) - }).render(); - return $body; + model : this.model, + el : $where.find( '.tags-display' ), + onshowFirstTime : function(){ this.render(); }, + $activator : faIconButton({ + title : _l( 'Edit dataset tags' ), + classes : 'dataset-tag-btn', + faIcon : 'fa-tags' + }).appendTo( $where.find( '.dataset-actions .right' ) ) + }); + }, + _renderAnnotation : function( $where ){ + this.annotationEditor = new AnnotationEditor({ + model : this.model, + el : $where.find( '.annotation-display' ), + onshowFirstTime : function(){ this.render(); }, + $activator : faIconButton({ + title : _l( 'Edit dataset annotation' ), + classes : 'dataset-annotate-btn', + faIcon : 'fa-comment' + }).appendTo( $where.find( '.dataset-actions .right' ) ) + }); },

makeDbkeyEditLink : function( $body ){ @@ -402,73 +343,16 @@ 'click .dataset-title-bar' : 'toggleBodyVisibility', 'click .dataset-undelete' : function( ev ){ this.model.undelete(); return false; }, 'click .dataset-unhide' : function( ev ){ this.model.unhide(); return false; }, - 'click .dataset-purge' : 'confirmPurge', - - 'click .dataset-tag-btn' : 'displayTags', - 'click .dataset-annotate-btn' : 'loadAndDisplayAnnotation' + 'click .dataset-purge' : 'confirmPurge' },

/** listener for item purge */ confirmPurge : function _confirmPurge( ev ){ -//TODO: confirm dialog + //TODO: confirm dialog this.model.purge(); return false; },

- // ......................................................................... tags - /** Find the tag area and, if initial: load the html (via ajax) for displaying them; otherwise, unhide/hide - */ -//TODO: into sub-MV - displayTags : function( event ){ - this.$el.find( '.tags-display' ).slideToggle( this.fxSpeed ); - return false; - }, - - // ......................................................................... annotations - /** Find the annotation area and, if initial: load the html (via ajax) for displaying them; otherwise, unhide/hide - */ - loadAndDisplayAnnotation : function( event ){ -//TODO: this is a drop in from history.mako - should use MV as well - this.log( this + '.loadAndDisplayAnnotation', event ); - var view = this, - $annotationArea = this.$el.find( '.annotation-display' ), - $annotationElem = $annotationArea.find( '.annotation' ); - - // Show or hide annotation area; if showing annotation area and it's empty, fill it. - if ( $annotationArea.is( ":hidden" ) ){ - if( !jQuery.trim( $annotationElem.html() ) ){ - // Need to fill annotation element. - var xhr = $.ajax( this.urls.annotation.get ); - xhr.fail( function( xhr, status, error ){ - view.log( "Annotation failed", xhr, status, error ); - view.trigger( 'error', view, xhr, {}, _l( "Annotation failed" ) ); - }); - xhr.done( function( html ){ - html = html || "<em>" + _l( "Describe or add notes to dataset" ) + "</em>"; - $annotationElem.html( html ); - $annotationArea.find( "[title]" ).tooltip(); - - $annotationElem.make_text_editable({ - use_textarea: true, - on_finish: function( newAnnotation ){ - $annotationElem.text( newAnnotation ); - view.model.save({ annotation: newAnnotation }, { silent: true }) - .fail( function(){ - $annotationElem.text( view.model.previous( 'annotation' ) ); - }); - } - }); - $annotationArea.slideDown( view.fxSpeed ); - }); - } else { - $annotationArea.slideDown( view.fxSpeed ); - } - } else { - $annotationArea.slideUp( view.fxSpeed ); - } - return false; - }, - // ......................................................................... misc /** string rep */ toString : function(){

diff -r 9493825685ee557c4a33b37614b22c4c21463219 -r 59970693121175aacf9d9ca75f012104d7e5db08 static/scripts/mvc/dataset/hda-model.js --- a/static/scripts/mvc/dataset/hda-model.js +++ b/static/scripts/mvc/dataset/hda-model.js @@ -56,7 +56,7 @@ },

/** fetch location of this HDA's history in the api */ - urlRoot: 'api/histories/', + urlRoot: '/api/histories/', /** full url spec. for this HDA */ url : function(){ return this.urlRoot + this.get( 'history_id' ) + '/contents/' + this.get( 'id' ); @@ -80,10 +80,6 @@

'annotation': { 'get': galaxy_config.root + 'dataset/get_annotation_async?id=' + id, 'set': galaxy_config.root + 'dataset/annotate_async?id=' + id }, - 'tags' : { 'get': galaxy_config.root + 'tag/get_tagging_elt_async?item_id=' - + id + '&item_class=HistoryDatasetAssociation', - 'set': galaxy_config.root + 'tag/retag?item_id=' - + id + '&item_class=HistoryDatasetAssociation' }, 'meta_download' : galaxy_config.root + 'dataset/get_metadata_file?hda_id=' + id + '&metadata_name=' }; return urls;

diff -r 9493825685ee557c4a33b37614b22c4c21463219 -r 59970693121175aacf9d9ca75f012104d7e5db08 static/scripts/mvc/history/history-model.js --- a/static/scripts/mvc/history/history-model.js +++ b/static/scripts/mvc/history/history-model.js @@ -25,8 +25,8 @@ name : 'Unnamed History', state : 'new',

- diskSize : 0, - deleted : false + diskSize : 0, + deleted : false },

// ........................................................................ urls

diff -r 9493825685ee557c4a33b37614b22c4c21463219 -r 59970693121175aacf9d9ca75f012104d7e5db08 static/scripts/mvc/history/history-panel.js --- a/static/scripts/mvc/history/history-panel.js +++ b/static/scripts/mvc/history/history-panel.js @@ -13,9 +13,6 @@ tags & annotations -> out use model.save instead of urls

- meta: - convert function comments to jsDoc style, complete comments - feature creep: lineage hide button @@ -633,14 +630,8 @@

} else { $newRender.append( HistoryPanel.templates.historyPanel( this.model.toJSON() ) ); - $newRender.find( '.history-secondary-actions' ).append([ - this._render_tagButton(), - this._render_annotateButton() - ]); - this.tagsEditor = new TagsEditor({ - model : this.model, - el : $newRender.find( '.history-controls .tags-display' ) - }).render(); + this._renderTags( $newRender ); + this._renderAnnotation( $newRender ); } this._setUpBehaviours( $newRender );

@@ -654,34 +645,29 @@ return $newRender; },

- /** Render icon-button to load and display tagging html. - * @returns {jQuery} rendered DOM - */ - _render_tagButton : function(){ - return faIconButton({ - title : _l( 'Edit history tags' ), - classes : 'history-tag-button', - faIcon : 'fa-tags' + _renderTags : function( $where ){ + this.tagsEditor = new TagsEditor({ + model : this.model, + el : $where.find( '.history-controls .tags-display' ), + onshowFirstTime : function(){ this.render(); }, + $activator : faIconButton({ + title : _l( 'Edit history tags' ), + classes : 'history-tag-btn', + faIcon : 'fa-tags' + }).appendTo( $where.find( '.history-secondary-actions' ) ) }); - //return new IconButtonView({ model : new IconButton({ - // title : _l( 'Edit history tags' ), - // icon_class : 'tags' - //})}).render().$el; }, - - /** Render icon-button to load and display annotation html. - * @returns {jQuery} rendered DOM - */ - _render_annotateButton : function(){ - return faIconButton({ - title : _l( 'Edit history tags' ), - classes : 'history-annotate-button', - faIcon : 'fa-comment' + _renderAnnotation : function( $where ){ + this.annotationEditor = new AnnotationEditor({ + model : this.model, + el : $where.find( '.history-controls .annotation-display' ), + onshowFirstTime : function(){ this.render(); }, + $activator : faIconButton({ + title : _l( 'Edit history tags' ), + classes : 'history-annotate-btn', + faIcon : 'fa-comment' + }).appendTo( $where.find( '.history-secondary-actions' ) ) }); - //return new IconButtonView({ model : new IconButton({ - // title : _l( 'Edit history annotation' ), - // icon_class : 'annotate' - //})}).render().$el; },

/** Set up HistoryPanel js/widget behaviours @@ -694,24 +680,7 @@ // anon users shouldn't have access to any of the following if( !this.model || !Galaxy.currUser || Galaxy.currUser.isAnonymous() ){ return; }

- // annotation slide down - var panel = this, - // need specific selector ('annotation-display' is used in HDAs, too) - $historyAnnotationArea = $where.find( '.history-controls .annotation-display' ); - $where.find( '.history-controls .history-annotate-button' ).click( function() { - if( $historyAnnotationArea.is( ":hidden" ) ){ - //HACK: for whitespace added to annotation - var $anno = panel.$el.find( '.history-controls .annotation' ); - $anno.text( jQuery.trim( $anno.text() ) ); - $historyAnnotationArea.slideDown( panel.fxSpeed ); - - } else { - $historyAnnotationArea.slideUp( panel.fxSpeed ); - } - return false; - }); - //<em>{{#local}}Describe or add notes to history{{/local}}</em> - + var panel = this;//, $where.find( '.history-name' ).make_text_editable({ on_finish: function( newName ){ $where.find( '.history-name' ).text( newName ); @@ -721,17 +690,6 @@ }); } }); - - $where.find( '.history-controls .annotation' ).make_text_editable({ - use_textarea : true, - on_finish: function( newAnnotation ){ - $where.find( '.history-controls .annotation' ).text( newAnnotation ); - panel.model.save({ annotation: newAnnotation }) - .fail( function(){ - $where.find( '.history-controls .annotation' ).text( panel.model.previous( 'annotation' ) ); - }); - } - }); },

/** Set up/render a view for each HDA to be shown, init with model and listeners. @@ -759,9 +717,8 @@ // ------------------------------------------------------------------------ panel events /** event map */ events : { - 'click .history-tag-button' : 'displayTags', -//TODO: switch to common close (X) idiom // allow (error) messages to be clicked away + //TODO: switch to common close (X) idiom 'click .message-container' : 'clearMessages' },

@@ -802,14 +759,6 @@ return this.storage.get( 'show_hidden' ); },

- /** Find the tag area and, if initial: load the html (via ajax) for displaying them; otherwise, unhide/hide - */ -//TODO: into sub-MV - displayTags : function( event ){ - this.$el.find( '.history-controls .tags-display' ).slideToggle( this.fxSpeed ); - return false; - }, - // ........................................................................ loading indicator /** hide the panel and display a loading indicator (in the panel's parent) when history model's are switched */ showLoadingIndicator : function( msg, speed, callback ){

diff -r 9493825685ee557c4a33b37614b22c4c21463219 -r 59970693121175aacf9d9ca75f012104d7e5db08 static/scripts/mvc/tags.js --- a/static/scripts/mvc/tags.js +++ b/static/scripts/mvc/tags.js @@ -1,74 +1,88 @@ -/** */ -var TagsEditor = Backbone.View.extend( LoggableMixin ).extend({ +/** A view on any model that has a 'tags' attribute (a list of tag strings) + * Incorporates the select2 jQuery plugin for tags display/editing: + * http://ivaynberg.github.io/select2/ + */ +var TagsEditor = Backbone.View.extend( LoggableMixin ).extend( HiddenUntilActivatedViewMixin ).extend({

tagName : 'div', className : 'tags-display',

- /** */ + /** Set up listeners, parse options */ initialize : function( options ){ //console.debug( this, options ); + // only listen to the model only for changes to tags - re-render this.listenTo( this.model, 'change:tags', function(){ this.render(); }); + this.hiddenUntilActivated( options.$activator, options ); },

- /** */ + /** Build the DOM elements, call select to on the created input, and set up behaviors */ render : function(){ var view = this; + this.$el.html( this._template() );

- this.$el.html( this.template() ); - this.$el.find( '.tags-input' ).select2({ + this.$input().select2({ placeholder : 'Add tags', width : '100%', tags : function(){ // initialize possible tags in the dropdown based on all the tags the user has used so far - return view.getTagsUsed(); + return view._getTagsUsed(); } }); - this._behaviors(); + + this._setUpBehaviors(); return this; },

- /** */ - template : function(){ + /** @returns {String} the html text used to build the view's DOM */ + _template : function(){ return [ //TODO: make prompt optional '<label class="prompt">', _l( 'Tags' ), '</label>', // set up initial tags by adding as CSV to input vals (necc. to init select2) - '<input class="tags-input" value="', this.tagsToCSV( this.model.get( 'tags' ) ), '" />' + '<input class="tags-input" value="', this.tagsToCSV(), '" />' ].join( '' ); },

- /** */ - tagsToCSV : function( tagsArray ){ + /** @returns {String} the sorted, comma-separated tags from the model */ + tagsToCSV : function(){ + var tagsArray = this.model.get( 'tags' ); if( !_.isArray( tagsArray ) || _.isEmpty( tagsArray ) ){ return ''; } return tagsArray.sort().join( ',' ); },

- /** */ - getTagsUsed : function(){ - return _.map( Galaxy.currUser.get( 'tags_used' ), function( tag ){ - return { id: tag, text: tag }; - }); + /** @returns {jQuery} the input for this view */ + $input : function(){ + return this.$el.find( '.tags-input' ); },

- /** */ - _behaviors : function(){ + /** @returns {String[]} all tags used by the current user */ + _getTagsUsed : function(){ +//TODO: global + return Galaxy.currUser.get( 'tags_used' ); + }, + + /** set up any event listeners on the view's DOM (mostly handled by select2) */ + _setUpBehaviors : function(){ var view = this; - this.$el.find( '.tags-input' ).on( 'change', function( event ){ + this.$input().on( 'change', function( event ){ // save the model's tags in either remove or added event view.model.save({ tags: event.val }, { silent: true }); // if it's new, add the tag to the users tags if( event.added ){ - view.addNewTagToTagsUsed( event.added.text ); + view._addNewTagToTagsUsed( event.added.text ); } }); },

- /** */ - addNewTagToTagsUsed : function( newTag ){ + /** add a new tag (if not already there) to the list of all tags used by the user + * @param {String} newTag the tag to add to the list of used + */ + _addNewTagToTagsUsed : function( newTag ){ +//TODO: global var tagsUsed = Galaxy.currUser.get( 'tags_used' ); if( !_.contains( tagsUsed, newTag ) ){ tagsUsed.push( newTag ); @@ -77,12 +91,13 @@ } },

- /** */ + /** shut down event listeners and remove this view's DOM */ remove : function(){ - this.$el.off(); + this.$input.off(); + this.stopListening( this.model ); Backbone.View.prototype.remove.call( this ); },

- /** */ - toString : function(){ return [ 'TagSetView(', this.model + '', ')' ].join(''); } + /** string rep */ + toString : function(){ return [ 'TagsEditor(', this.model + '', ')' ].join(''); } });

diff -r 9493825685ee557c4a33b37614b22c4c21463219 -r 59970693121175aacf9d9ca75f012104d7e5db08 static/scripts/packed/mvc/annotations.js --- a/static/scripts/packed/mvc/annotations.js +++ b/static/scripts/packed/mvc/annotations.js @@ -1,1 +1,1 @@ -var Annotation=BaseModel.extend(LoggableMixin).extend({logger:console,toString:function(){return"Annotation()"}});var AnnotationView=BaseView.extend(LoggableMixin).extend({logger:console,toString:function(){return"AnnotationView()"}}); \ No newline at end of file +var AnnotationEditor=BaseView.extend(LoggableMixin).extend(HiddenUntilActivatedViewMixin).extend({tagName:"div",className:"annotation-display",initialize:function(a){a=a||{};this.tooltipConfig=a.tooltipConfig||{placement:"bottom"};this.listenTo(this.model,"change:annotation",function(){this.render()});this.hiddenUntilActivated(a.$activator,a)},render:function(){var a=this;this.$el.html(this._template());this.$el.find("[title]").tooltip(this.tooltipConfig);this.$annotation().make_text_editable({use_textarea:true,on_finish:function(b){a.$annotation().text(b);a.model.save({annotation:b},{silent:true}).fail(function(){a.$annotation().text(a.model.previous("annotation"))})}});return this},_template:function(){var a=this.model.get("annotation");return['<label class="prompt">',_l("Annotation"),"</label>",'<div class="annotation" title="',_l("Edit annotation"),'">',a,"</div>"].join("")},$annotation:function(){return this.$el.find(".annotation")},remove:function(){this.$annotation.off();this.stopListening(this.model);Backbone.View.prototype.remove.call(this)},toString:function(){return["AnnotationEditor(",this.model+"",")"].join("")}}); \ No newline at end of file

diff -r 9493825685ee557c4a33b37614b22c4c21463219 -r 59970693121175aacf9d9ca75f012104d7e5db08 static/scripts/packed/mvc/base-mvc.js --- a/static/scripts/packed/mvc/base-mvc.js +++ b/static/scripts/packed/mvc/base-mvc.js @@ -1,1 +1,1 @@ -var BaseModel=Backbone.RelationalModel.extend({defaults:{name:null,hidden:false},show:function(){this.set("hidden",false)},hide:function(){this.set("hidden",true)},is_visible:function(){return !this.attributes.hidden}});var BaseView=Backbone.View.extend({initialize:function(){this.model.on("change:hidden",this.update_visible,this);this.update_visible()},update_visible:function(){if(this.model.attributes.hidden){this.$el.hide()}else{this.$el.show()}}});var LoggableMixin={logger:null,log:function(){if(this.logger){var a=this.logger.log;if(typeof this.logger.log==="object"){a=Function.prototype.bind.call(this.logger.log,this.logger)}return a.apply(this.logger,arguments)}return undefined}};var PersistentStorage=function(k,g){if(!k){throw ("PersistentStorage needs storageKey argument")}g=g||{};var i=sessionStorage,c=function j(m){var n=this.getItem(m);return(n!==null)?(JSON.parse(this.getItem(m))):(null)},b=function e(m,n){return this.setItem(m,JSON.stringify(n))},d=function f(m){return this.removeItem(m)};function a(n,m){n=n||{};m=m||null;return{get:function(o){if(o===undefined){return n}else{if(n.hasOwnProperty(o)){return(jQuery.type(n[o])==="object")?(new a(n[o],this)):(n[o])}}return undefined},set:function(o,p){n[o]=p;this._save();return this},deleteKey:function(o){delete n[o];this._save();return this},_save:function(){return m._save()},toString:function(){return("StorageRecursionHelper("+n+")")}}}var l={},h=c.call(i,k);if(h===null||h===undefined){h=jQuery.extend(true,{},g);b.call(i,k,h)}l=new a(h);jQuery.extend(l,{_save:function(m){return b.call(i,k,l.get())},destroy:function(){return d.call(i,k)},toString:function(){return"PersistentStorage("+k+")"}});return l};function LoadingIndicator(a,c){c=c||{};var b=this;function d(){var e=['<div class="loading-indicator">','<span class="fa fa-spinner fa-spin fa-lg" style="color: grey"></span>','<span style="margin-left: 8px; color: grey"><i>loading...</i></span>',"</div>"].join("\n");return $(e).css(c.css||{position:"fixed",margin:"12px 0px 0px 10px",opacity:"0.85"}).hide()}b.show=function(f,e,g){f=f||"loading...";e=e||"fast";b.$indicator=d().insertBefore(a);b.message(f);b.$indicator.fadeIn(e,g);return b};b.message=function(e){b.$indicator.find("i").text(e)};b.hide=function(e,f){e=e||"fast";if(b.$indicator&&b.$indicator.size()){b.$indicator.fadeOut(e,function(){b.$indicator.remove();if(f){f()}})}else{if(f){f()}}return b};return b}; \ No newline at end of file +var BaseModel=Backbone.RelationalModel.extend({defaults:{name:null,hidden:false},show:function(){this.set("hidden",false)},hide:function(){this.set("hidden",true)},is_visible:function(){return !this.attributes.hidden}});var BaseView=Backbone.View.extend({initialize:function(){this.model.on("change:hidden",this.update_visible,this);this.update_visible()},update_visible:function(){if(this.model.attributes.hidden){this.$el.hide()}else{this.$el.show()}}});var LoggableMixin={logger:null,log:function(){if(this.logger){var a=this.logger.log;if(typeof this.logger.log==="object"){a=Function.prototype.bind.call(this.logger.log,this.logger)}return a.apply(this.logger,arguments)}return undefined}};var PersistentStorage=function(k,g){if(!k){throw ("PersistentStorage needs storageKey argument")}g=g||{};var i=sessionStorage,c=function j(m){var n=this.getItem(m);return(n!==null)?(JSON.parse(this.getItem(m))):(null)},b=function e(m,n){return this.setItem(m,JSON.stringify(n))},d=function f(m){return this.removeItem(m)};function a(n,m){n=n||{};m=m||null;return{get:function(o){if(o===undefined){return n}else{if(n.hasOwnProperty(o)){return(jQuery.type(n[o])==="object")?(new a(n[o],this)):(n[o])}}return undefined},set:function(o,p){n[o]=p;this._save();return this},deleteKey:function(o){delete n[o];this._save();return this},_save:function(){return m._save()},toString:function(){return("StorageRecursionHelper("+n+")")}}}var l={},h=c.call(i,k);if(h===null||h===undefined){h=jQuery.extend(true,{},g);b.call(i,k,h)}l=new a(h);jQuery.extend(l,{_save:function(m){return b.call(i,k,l.get())},destroy:function(){return d.call(i,k)},toString:function(){return"PersistentStorage("+k+")"}});return l};var HiddenUntilActivatedViewMixin={hiddenUntilActivated:function(a,c){c=c||{};this.HUAVOptions={$elementShown:this.$el,showFn:jQuery.prototype.toggle,showSpeed:"fast"};_.extend(this.HUAVOptions,c||{});this.HUAVOptions.hasBeenShown=this.HUAVOptions.$elementShown.is(":visible");if(a){var b=this;a.on("click",function(d){b.toggle(b.HUAVOptions.showSpeed)})}},toggle:function(){if(this.HUAVOptions.$elementShown.is(":hidden")){if(!this.HUAVOptions.hasBeenShown){if(_.isFunction(this.HUAVOptions.onshowFirstTime)){this.HUAVOptions.hasBeenShown=true;this.HUAVOptions.onshowFirstTime.call(this)}}else{if(_.isFunction(this.HUAVOptions.onshow)){this.HUAVOptions.onshow.call(this)}}}return this.HUAVOptions.showFn.apply(this.HUAVOptions.$elementShown,arguments)}};function LoadingIndicator(a,c){c=c||{};var b=this;function d(){var e=['<div class="loading-indicator">','<span class="fa fa-spinner fa-spin fa-lg" style="color: grey"></span>','<span style="margin-left: 8px; color: grey"><i>loading...</i></span>',"</div>"].join("\n");return $(e).css(c.css||{position:"fixed",margin:"12px 0px 0px 10px",opacity:"0.85"}).hide()}b.show=function(f,e,g){f=f||"loading...";e=e||"fast";b.$indicator=d().insertBefore(a);b.message(f);b.$indicator.fadeIn(e,g);return b};b.message=function(e){b.$indicator.find("i").text(e)};b.hide=function(e,f){e=e||"fast";if(b.$indicator&&b.$indicator.size()){b.$indicator.fadeOut(e,function(){b.$indicator.remove();if(f){f()}})}else{if(f){f()}}return b};return b}; \ No newline at end of file

diff -r 9493825685ee557c4a33b37614b22c4c21463219 -r 59970693121175aacf9d9ca75f012104d7e5db08 static/scripts/packed/mvc/dataset/hda-base.js --- a/static/scripts/packed/mvc/dataset/hda-base.js +++ b/static/scripts/packed/mvc/dataset/hda-base.js @@ -1,1 +1,1 @@ -define(["mvc/dataset/hda-model"],function(b){var a=Backbone.View.extend(LoggableMixin).extend({tagName:"div",className:"dataset hda history-panel-hda",id:function(){return"hda-"+this.model.get("id")},fxSpeed:"fast",initialize:function(c){if(c.logger){this.logger=this.model.logger=c.logger}this.log(this+".initialize:",c);this.defaultPrimaryActionButtonRenderers=[this._render_showParamsButton];this.expanded=c.expanded||false;this._setUpListeners()},_setUpListeners:function(){this.model.on("change",function(d,c){if(this.model.changedAttributes().state&&this.model.inReadyState()&&this.expanded&&!this.model.hasDetails()){this.model.fetch()}else{this.render()}},this)},render:function(e){e=(e===undefined)?(true):(e);var c=this;this.$el.find("[title]").tooltip("destroy");this.urls=this.model.urls();var d=$(a.templates.skeleton(this.model.toJSON()));d.find(".dataset-primary-actions").append(this._render_titleButtons());d.children(".dataset-body").replaceWith(this._render_body());this._setUpBehaviors(d);if(e){$(c).queue(function(f){this.$el.fadeOut(c.fxSpeed,f)})}$(c).queue(function(f){this.$el.empty().attr("class",c.className).addClass("state-"+c.model.get("state")).append(d.children());f()});if(e){$(c).queue(function(f){this.$el.fadeIn(c.fxSpeed,f)})}$(c).queue(function(f){this.trigger("rendered",c);if(this.model.inReadyState()){this.trigger("rendered:ready",c)}f()});return this},_setUpBehaviors:function(c){c=c||this.$el;make_popup_menus(c);c.find("[title]").tooltip({placement:"bottom"})},_render_titleButtons:function(){return[this._render_displayButton()]},_render_displayButton:function(){if((this.model.get("state")===b.HistoryDatasetAssociation.STATES.NOT_VIEWABLE)||(this.model.get("state")===b.HistoryDatasetAssociation.STATES.DISCARDED)||(this.model.get("state")===b.HistoryDatasetAssociation.STATES.NEW)||(!this.model.get("accessible"))){return null}var d={icon_class:"display",target:"galaxy_main"};if(this.model.get("purged")){d.disabled=true;d.title=_l("Cannot display datasets removed from disk")}else{if(this.model.get("state")===b.HistoryDatasetAssociation.STATES.UPLOAD){d.disabled=true;d.title=_l("This dataset must finish uploading before it can be viewed")}else{d.title=_l("View data");d.href=this.urls.display;var c=this;d.onclick=function(){Galaxy.frame.add({title:"Data Viewer: "+c.model.get("name"),type:"url",target:"galaxy_main",content:c.urls.display})}}}d.faIcon="fa-eye";return faIconButton(d)},_render_downloadButton:function(){if(this.model.get("purged")||!this.model.hasData()){return null}var d=this.urls,e=this.model.get("meta_files");if(_.isEmpty(e)){return $(['<a href="'+d.download+'" title="'+_l("Download")+'" class="icon-btn">','<span class="fa fa-floppy-o"></span>',"</a>"].join(""))}var f="dataset-"+this.model.get("id")+"-popup",c=['<div popupmenu="'+f+'">','<a href="'+d.download+'">',_l("Download Dataset"),"</a>","<a>"+_l("Additional Files")+"</a>",_.map(e,function(g){return['<a class="action-button" href="',d.meta_download+g.file_type,'">',_l("Download")," ",g.file_type,"</a>"].join("")}).join("\n"),"</div>",'<div class="icon-btn-group">','<a href="'+d.download+'" title="'+_l("Download")+'" class="icon-btn">','<span class="fa fa-floppy-o"></span>','</a><a class="icon-btn popup" id="'+f+'">','<span class="fa fa-caret-down"></span>',"</a>","</div>"].join("\n");return $(c)},_render_showParamsButton:function(){return faIconButton({title:_l("View details"),href:this.urls.show_params,target:"galaxy_main",faIcon:"fa-info-circle"})},_render_body:function(){var d=$('<div>Error: unknown dataset state "'+this.model.get("state")+'".</div>'),c=this["_render_body_"+this.model.get("state")];if(_.isFunction(c)){d=c.call(this)}if(this.expanded){d.show()}return d},_render_stateBodyHelper:function(c,f){f=f||[];var d=this,e=$(a.templates.body(_.extend(this.model.toJSON(),{body:c})));e.find(".dataset-actions .left").append(_.map(f,function(g){return g.call(d)}));return e},_render_body_new:function(){return this._render_stateBodyHelper("<div>"+_l("This is a new dataset and not all of its data are available yet")+"</div>")},_render_body_noPermission:function(){return this._render_stateBodyHelper("<div>"+_l("You do not have permission to view this dataset")+"</div>")},_render_body_discarded:function(){return this._render_stateBodyHelper("<div>"+_l("The job creating this dataset was cancelled before completion")+"</div>",this.defaultPrimaryActionButtonRenderers)},_render_body_queued:function(){return this._render_stateBodyHelper("<div>"+_l("This job is waiting to run")+"</div>",this.defaultPrimaryActionButtonRenderers)},_render_body_upload:function(){return this._render_stateBodyHelper("<div>"+_l("This dataset is currently uploading")+"</div>")},_render_body_setting_metadata:function(){return this._render_stateBodyHelper("<div>"+_l("Metadata is being auto-detected")+"</div>")},_render_body_running:function(){return this._render_stateBodyHelper("<div>"+_l("This job is currently running")+"</div>",this.defaultPrimaryActionButtonRenderers)},_render_body_paused:function(){return this._render_stateBodyHelper("<div>"+_l('This job is paused. Use the "Resume Paused Jobs" in the history menu to resume')+"</div>",this.defaultPrimaryActionButtonRenderers)},_render_body_error:function(){var c=_l("An error occurred with this dataset")+": <i>"+$.trim(this.model.get("misc_info"))+"</i>";if(!this.model.get("purged")){c="<div>"+this.model.get("misc_blurb")+"</div>"+c}return this._render_stateBodyHelper(c,this.defaultPrimaryActionButtonRenderers.concat([this._render_downloadButton]))},_render_body_empty:function(){return this._render_stateBodyHelper("<div>"+_l("No data")+": <i>"+this.model.get("misc_blurb")+"</i></div>",this.defaultPrimaryActionButtonRenderers)},_render_body_failed_metadata:function(){var c=$('<div class="warningmessagesmall"></div>').append($("<strong/>").text(_l("An error occurred setting the metadata for this dataset"))),d=this._render_body_ok();d.prepend(c);return d},_render_body_ok:function(){var c=this,e=$(a.templates.body(this.model.toJSON())),d=[this._render_downloadButton].concat(this.defaultPrimaryActionButtonRenderers);e.find(".dataset-actions .left").append(_.map(d,function(f){return f.call(c)}));if(this.model.isDeletedOrPurged()){return e}return e},events:{"click .dataset-title-bar":"toggleBodyVisibility"},toggleBodyVisibility:function(d,c){var e=this.$el.find(".dataset-body");c=(c===undefined)?(!e.is(":visible")):(c);if(c){this.expandBody()}else{this.collapseBody()}},expandBody:function(){var c=this;function d(){c.render(false).$el.children(".dataset-body").slideDown(c.fxSpeed,function(){c.expanded=true;c.trigger("body-expanded",c.model.get("id"))})}if(this.model.inReadyState()&&!this.model.hasDetails()){this.model.fetch({silent:true}).always(function(e){d()})}else{d()}},collapseBody:function(){var c=this;this.$el.children(".dataset-body").slideUp(c.fxSpeed,function(){c.expanded=false;c.trigger("body-collapsed",c.model.get("id"))})},remove:function(d){var c=this;this.$el.fadeOut(c.fxSpeed,function(){c.$el.remove();c.off();if(d){d()}})},toString:function(){var c=(this.model)?(this.model+""):("(no model)");return"HDABaseView("+c+")"}});a.templates={skeleton:Handlebars.templates["template-hda-skeleton"],body:Handlebars.templates["template-hda-body"]};return{HDABaseView:a}}); \ No newline at end of file +define(["mvc/dataset/hda-model"],function(b){var a=Backbone.View.extend(LoggableMixin).extend({tagName:"div",className:"dataset hda history-panel-hda",id:function(){return"hda-"+this.model.get("id")},fxSpeed:"fast",initialize:function(c){if(c.logger){this.logger=this.model.logger=c.logger}this.log(this+".initialize:",c);this.defaultPrimaryActionButtonRenderers=[this._render_showParamsButton];this.expanded=c.expanded||false;this._setUpListeners()},_setUpListeners:function(){this.model.on("change",function(d,c){if(this.model.changedAttributes().state&&this.model.inReadyState()&&this.expanded&&!this.model.hasDetails()){this.model.fetch()}else{this.render()}},this)},render:function(e){e=(e===undefined)?(true):(e);var c=this;this.$el.find("[title]").tooltip("destroy");this.urls=this.model.urls();var d=$(a.templates.skeleton(this.model.toJSON()));d.find(".dataset-primary-actions").append(this._render_titleButtons());d.children(".dataset-body").replaceWith(this._render_body());this._setUpBehaviors(d);if(e){$(c).queue(function(f){this.$el.fadeOut(c.fxSpeed,f)})}$(c).queue(function(f){this.$el.empty().attr("class",c.className).addClass("state-"+c.model.get("state")).append(d.children());f()});if(e){$(c).queue(function(f){this.$el.fadeIn(c.fxSpeed,f)})}$(c).queue(function(f){this.trigger("rendered",c);if(this.model.inReadyState()){this.trigger("rendered:ready",c)}f()});return this},_setUpBehaviors:function(c){c=c||this.$el;make_popup_menus(c);c.find("[title]").tooltip({placement:"bottom"})},_render_titleButtons:function(){return[this._render_displayButton()]},_render_displayButton:function(){if((this.model.get("state")===b.HistoryDatasetAssociation.STATES.NOT_VIEWABLE)||(this.model.get("state")===b.HistoryDatasetAssociation.STATES.DISCARDED)||(this.model.get("state")===b.HistoryDatasetAssociation.STATES.NEW)||(!this.model.get("accessible"))){return null}var d={icon_class:"display",target:"galaxy_main"};if(this.model.get("purged")){d.disabled=true;d.title=_l("Cannot display datasets removed from disk")}else{if(this.model.get("state")===b.HistoryDatasetAssociation.STATES.UPLOAD){d.disabled=true;d.title=_l("This dataset must finish uploading before it can be viewed")}else{d.title=_l("View data");d.href=this.urls.display;var c=this;d.onclick=function(){Galaxy.frame.add({title:"Data Viewer: "+c.model.get("name"),type:"url",target:"galaxy_main",content:c.urls.display})}}}d.faIcon="fa-eye";return faIconButton(d)},_render_downloadButton:function(){if(this.model.get("purged")||!this.model.hasData()){return null}var d=this.urls,e=this.model.get("meta_files");if(_.isEmpty(e)){return $(['<a href="'+d.download+'" title="'+_l("Download")+'" class="icon-btn">','<span class="fa fa-floppy-o"></span>',"</a>"].join(""))}var f="dataset-"+this.model.get("id")+"-popup",c=['<div popupmenu="'+f+'">','<a href="'+d.download+'">',_l("Download Dataset"),"</a>","<a>"+_l("Additional Files")+"</a>",_.map(e,function(g){return['<a class="action-button" href="',d.meta_download+g.file_type,'">',_l("Download")," ",g.file_type,"</a>"].join("")}).join("\n"),"</div>",'<div class="icon-btn-group">','<a href="'+d.download+'" title="'+_l("Download")+'" class="icon-btn">','<span class="fa fa-floppy-o"></span>','</a><a class="icon-btn popup" id="'+f+'">','<span class="fa fa-caret-down"></span>',"</a>","</div>"].join("\n");return $(c)},_render_showParamsButton:function(){return faIconButton({title:_l("View details"),href:this.urls.show_params,target:"galaxy_main",faIcon:"fa-info-circle"})},_render_body:function(){var d=$('<div>Error: unknown dataset state "'+this.model.get("state")+'".</div>'),c=this["_render_body_"+this.model.get("state")];if(_.isFunction(c)){d=c.call(this)}if(this.expanded){d.show()}return d},_render_stateBodyHelper:function(c,f){f=f||[];var d=this,e=$(a.templates.body(_.extend(this.model.toJSON(),{body:c})));e.find(".dataset-actions .left").append(_.map(f,function(g){return g.call(d)}));return e},_render_body_new:function(){return this._render_stateBodyHelper("<div>"+_l("This is a new dataset and not all of its data are available yet")+"</div>")},_render_body_noPermission:function(){return this._render_stateBodyHelper("<div>"+_l("You do not have permission to view this dataset")+"</div>")},_render_body_discarded:function(){return this._render_stateBodyHelper("<div>"+_l("The job creating this dataset was cancelled before completion")+"</div>",this.defaultPrimaryActionButtonRenderers)},_render_body_queued:function(){return this._render_stateBodyHelper("<div>"+_l("This job is waiting to run")+"</div>",this.defaultPrimaryActionButtonRenderers)},_render_body_upload:function(){return this._render_stateBodyHelper("<div>"+_l("This dataset is currently uploading")+"</div>")},_render_body_setting_metadata:function(){return this._render_stateBodyHelper("<div>"+_l("Metadata is being auto-detected")+"</div>")},_render_body_running:function(){return this._render_stateBodyHelper("<div>"+_l("This job is currently running")+"</div>",this.defaultPrimaryActionButtonRenderers)},_render_body_paused:function(){return this._render_stateBodyHelper("<div>"+_l('This job is paused. Use the "Resume Paused Jobs" in the history menu to resume')+"</div>",this.defaultPrimaryActionButtonRenderers)},_render_body_error:function(){var c=['<span class="help-text">',_l("An error occurred with this dataset"),":</span>",'<div class="job-error-text">',$.trim(this.model.get("misc_info")),"</div>"].join("");if(!this.model.get("purged")){c="<div>"+this.model.get("misc_blurb")+"</div>"+c}return this._render_stateBodyHelper(c,this.defaultPrimaryActionButtonRenderers.concat([this._render_downloadButton]))},_render_body_empty:function(){return this._render_stateBodyHelper("<div>"+_l("No data")+": <i>"+this.model.get("misc_blurb")+"</i></div>",this.defaultPrimaryActionButtonRenderers)},_render_body_failed_metadata:function(){var c=$('<div class="warningmessagesmall"></div>').append($("<strong/>").text(_l("An error occurred setting the metadata for this dataset"))),d=this._render_body_ok();d.prepend(c);return d},_render_body_ok:function(){var c=this,e=$(a.templates.body(this.model.toJSON())),d=[this._render_downloadButton].concat(this.defaultPrimaryActionButtonRenderers);e.find(".dataset-actions .left").append(_.map(d,function(f){return f.call(c)}));if(this.model.isDeletedOrPurged()){return e}return e},events:{"click .dataset-title-bar":"toggleBodyVisibility"},toggleBodyVisibility:function(d,c){var e=this.$el.find(".dataset-body");c=(c===undefined)?(!e.is(":visible")):(c);if(c){this.expandBody()}else{this.collapseBody()}},expandBody:function(){var c=this;function d(){c.render(false).$el.children(".dataset-body").slideDown(c.fxSpeed,function(){c.expanded=true;c.trigger("body-expanded",c.model.get("id"))})}if(this.model.inReadyState()&&!this.model.hasDetails()){this.model.fetch({silent:true}).always(function(e){d()})}else{d()}},collapseBody:function(){var c=this;this.$el.children(".dataset-body").slideUp(c.fxSpeed,function(){c.expanded=false;c.trigger("body-collapsed",c.model.get("id"))})},remove:function(d){var c=this;this.$el.fadeOut(c.fxSpeed,function(){c.$el.remove();c.off();if(d){d()}})},toString:function(){var c=(this.model)?(this.model+""):("(no model)");return"HDABaseView("+c+")"}});a.templates={skeleton:Handlebars.templates["template-hda-skeleton"],body:Handlebars.templates["template-hda-body"]};return{HDABaseView:a}}); \ No newline at end of file

diff -r 9493825685ee557c4a33b37614b22c4c21463219 -r 59970693121175aacf9d9ca75f012104d7e5db08 static/scripts/packed/mvc/dataset/hda-edit.js --- a/static/scripts/packed/mvc/dataset/hda-edit.js +++ b/static/scripts/packed/mvc/dataset/hda-edit.js @@ -1,1 +1,1 @@ -define(["mvc/dataset/hda-model","mvc/dataset/hda-base"],function(d,a){var f=a.HDABaseView.extend(LoggableMixin).extend({initialize:function(g){a.HDABaseView.prototype.initialize.call(this,g);this.hasUser=g.hasUser;this.defaultPrimaryActionButtonRenderers=[this._render_showParamsButton,this._render_rerunButton]},_render_titleButtons:function(){return a.HDABaseView.prototype._render_titleButtons.call(this).concat([this._render_editButton(),this._render_deleteButton()])},_render_editButton:function(){if((this.model.get("state")===d.HistoryDatasetAssociation.STATES.NEW)||(this.model.get("state")===d.HistoryDatasetAssociation.STATES.DISCARDED)||(this.model.get("state")===d.HistoryDatasetAssociation.STATES.NOT_VIEWABLE)||(!this.model.get("accessible"))){return null}var i=this.model.get("purged"),g=this.model.get("deleted"),h={title:_l("Edit Attributes"),href:this.urls.edit,target:"galaxy_main",icon_class:"edit"};if(g||i){h.enabled=false;if(i){h.title=_l("Cannot edit attributes of datasets removed from disk")}else{if(g){h.title=_l("Undelete dataset to edit attributes")}}}else{if(this.model.get("state")===d.HistoryDatasetAssociation.STATES.UPLOAD){h.disabled=true;h.title=_l("This dataset must finish uploading before it can be edited")}}h.faIcon="fa-pencil";return faIconButton(h)},_render_deleteButton:function(){if((this.model.get("state")===d.HistoryDatasetAssociation.STATES.NEW)||(this.model.get("state")===d.HistoryDatasetAssociation.STATES.NOT_VIEWABLE)||(!this.model.get("accessible"))){return null}var g=this,h=g.urls["delete"],i={title:_l("Delete"),href:h,icon_class:"delete",onclick:function(){g.$el.find(".menu-button.delete").trigger("mouseout");g.model["delete"]()}};if(this.model.get("deleted")||this.model.get("purged")){i={title:_l("Dataset is already deleted"),icon_class:"delete",enabled:false}}i.faIcon="fa-times";return faIconButton(i)},_render_errButton:function(){if(this.model.get("state")!==d.HistoryDatasetAssociation.STATES.ERROR){return null}return faIconButton({title:_l("View or report this error"),href:this.urls.report_error,target:"galaxy_main",faIcon:"fa-bug"})},_render_rerunButton:function(){return faIconButton({title:_l("Run this job again"),href:this.urls.rerun,target:"galaxy_main",faIcon:"fa-refresh"})},_render_visualizationsButton:function(){var g=this.model.get("visualizations");if((!this.model.hasData())||(_.isEmpty(g))){return null}if(_.isObject(g[0])){return this._render_visualizationsFrameworkButton(g)}if(!this.urls.visualization){return null}var i=this.model.get("dbkey"),l=this.urls.visualization,j={},m={dataset_id:this.model.get("id"),hda_ldda:"hda"};if(i){m.dbkey=i}var h=faIconButton({title:_l("Visualize"),href:this.urls.visualization,faIcon:"fa-bar-chart-o"});function k(n){switch(n){case"trackster":return b(l,m,i);case"scatterplot":return e(l,m);default:return function(){Galaxy.frame.add({title:"Visualization",type:"url",content:l+"/"+n+"?"+$.param(m)})}}}if(g.length===1){h.attr("title",g[0]);h.click(k(g[0]))}else{_.each(g,function(o){var n=o.charAt(0).toUpperCase()+o.slice(1);j[_l(n)]=k(o)});make_popupmenu(h,j)}return h},_render_visualizationsFrameworkButton:function(g){if(!(this.model.hasData())||!(g&&!_.isEmpty(g))){return null}var i=faIconButton({title:_l("Visualize"),faIcon:"fa-bar-chart-o"});i.addClass("visualize-icon");if(_.keys(g).length===1){i.attr("title",_.keys(g)[0]);i.attr("href",_.values(g)[0])}else{var j=[];_.each(g,function(k){j.push(k)});var h=new PopupMenu(i,j)}return i},_render_tagButton:function(){if(!this.hasUser){return null}return faIconButton({title:_l("Edit dataset tags"),classes:"dataset-tag-btn",faIcon:"fa-tags"})},_render_annotateButton:function(){if(!this.hasUser){return null}return faIconButton({title:_l("Edit dataset annotation"),classes:"dataset-annotate-btn",faIcon:"fa-comment"})},_render_body_failed_metadata:function(){var h=$("<a/>").attr({href:this.urls.edit,target:"galaxy_main"}).text(_l("set it manually or retry auto-detection")),g=$("<span/>").text(". "+_l("You may be able to")+" ").append(h),i=a.HDABaseView.prototype._render_body_failed_metadata.call(this);i.find(".warningmessagesmall strong").append(g);return i},_render_body_error:function(){var g=a.HDABaseView.prototype._render_body_error.call(this);g.find(".dataset-actions .left").prepend(this._render_errButton());return g},_render_body_ok:function(){var g=a.HDABaseView.prototype._render_body_ok.call(this);if(this.model.isDeletedOrPurged()){return g}this.makeDbkeyEditLink(g);g.find(".dataset-actions .left").append(this._render_visualizationsButton());g.find(".dataset-actions .right").append([this._render_tagButton(),this._render_annotateButton()]);this.tagsEditor=new TagsEditor({model:this.model,el:g.find(".tags-display")}).render();return g},makeDbkeyEditLink:function(g){if(this.model.get("metadata_dbkey")==="?"&&!this.model.isDeletedOrPurged()){g.find(".dataset-dbkey .value").replaceWith($('<a target="galaxy_main">?</a>').attr("href",this.urls.edit))}},events:{"click .dataset-title-bar":"toggleBodyVisibility","click .dataset-undelete":function(g){this.model.undelete();return false},"click .dataset-unhide":function(g){this.model.unhide();return false},"click .dataset-purge":"confirmPurge","click .dataset-tag-btn":"displayTags","click .dataset-annotate-btn":"loadAndDisplayAnnotation"},confirmPurge:function c(g){this.model.purge();return false},displayTags:function(g){this.$el.find(".tags-display").slideToggle(this.fxSpeed);return false},loadAndDisplayAnnotation:function(j){this.log(this+".loadAndDisplayAnnotation",j);var i=this,h=this.$el.find(".annotation-display"),g=h.find(".annotation");if(h.is(":hidden")){if(!jQuery.trim(g.html())){var k=$.ajax(this.urls.annotation.get);k.fail(function(n,l,m){i.log("Annotation failed",n,l,m);i.trigger("error",i,n,{},_l("Annotation failed"))});k.done(function(l){l=l||"<em>"+_l("Describe or add notes to dataset")+"</em>";g.html(l);h.find("[title]").tooltip();g.make_text_editable({use_textarea:true,on_finish:function(m){g.text(m);i.model.save({annotation:m},{silent:true}).fail(function(){g.text(i.model.previous("annotation"))})}});h.slideDown(i.fxSpeed)})}else{h.slideDown(i.fxSpeed)}}else{h.slideUp(i.fxSpeed)}return false},toString:function(){var g=(this.model)?(this.model+""):("(no model)");return"HDAView("+g+")"}});function e(g,h){action=function(){Galaxy.frame.add({title:"Scatterplot",type:"url",content:g+"/scatterplot?"+$.param(h),target:"galaxy_main",scratchbook:true});$("div.popmenu-wrapper").remove();return false};return action}function b(g,i,h){return function(){var j={};if(h){j["f-dbkey"]=h}$.ajax({url:g+"/list_tracks?"+$.param(j),dataType:"html",error:function(){alert(("Could not add this dataset to browser")+".")},success:function(k){var l=window.parent;l.Galaxy.modal.show({title:"View Data in a New or Saved Visualization",buttons:{Cancel:function(){l.Galaxy.modal.hide()},"View in saved visualization":function(){l.Galaxy.modal.show({title:"Add Data to Saved Visualization",body:k,buttons:{Cancel:function(){l.Galaxy.modal.hide()},"Add to visualization":function(){$(l.document).find("input[name=id]:checked").each(function(){l.Galaxy.modal.hide();var m=$(this).val();i.id=m;l.Galaxy.frame.add({title:"Trackster",type:"url",content:g+"/trackster?"+$.param(i),scratchbook:true})})}}})},"View in new visualization":function(){l.Galaxy.modal.hide();var m=g+"/trackster?"+$.param(i);l.Galaxy.frame.add({title:"Trackster",type:"url",content:m,scratchbook:true})}}})}});return false}}return{HDAEditView:f}}); \ No newline at end of file +define(["mvc/dataset/hda-model","mvc/dataset/hda-base"],function(d,a){var f=a.HDABaseView.extend(LoggableMixin).extend({initialize:function(g){a.HDABaseView.prototype.initialize.call(this,g);this.hasUser=g.hasUser;this.defaultPrimaryActionButtonRenderers=[this._render_showParamsButton,this._render_rerunButton]},_render_titleButtons:function(){return a.HDABaseView.prototype._render_titleButtons.call(this).concat([this._render_editButton(),this._render_deleteButton()])},_render_editButton:function(){if((this.model.get("state")===d.HistoryDatasetAssociation.STATES.NEW)||(this.model.get("state")===d.HistoryDatasetAssociation.STATES.DISCARDED)||(this.model.get("state")===d.HistoryDatasetAssociation.STATES.NOT_VIEWABLE)||(!this.model.get("accessible"))){return null}var i=this.model.get("purged"),g=this.model.get("deleted"),h={title:_l("Edit Attributes"),href:this.urls.edit,target:"galaxy_main",icon_class:"edit"};if(g||i){h.enabled=false;if(i){h.title=_l("Cannot edit attributes of datasets removed from disk")}else{if(g){h.title=_l("Undelete dataset to edit attributes")}}}else{if(this.model.get("state")===d.HistoryDatasetAssociation.STATES.UPLOAD){h.disabled=true;h.title=_l("This dataset must finish uploading before it can be edited")}}h.faIcon="fa-pencil";return faIconButton(h)},_render_deleteButton:function(){if((this.model.get("state")===d.HistoryDatasetAssociation.STATES.NEW)||(this.model.get("state")===d.HistoryDatasetAssociation.STATES.NOT_VIEWABLE)||(!this.model.get("accessible"))){return null}var g=this,h=g.urls["delete"],i={title:_l("Delete"),href:h,icon_class:"delete",onclick:function(){g.$el.find(".menu-button.delete").trigger("mouseout");g.model["delete"]()}};if(this.model.get("deleted")||this.model.get("purged")){i={title:_l("Dataset is already deleted"),icon_class:"delete",enabled:false}}i.faIcon="fa-times";return faIconButton(i)},_render_errButton:function(){if(this.model.get("state")!==d.HistoryDatasetAssociation.STATES.ERROR){return null}return faIconButton({title:_l("View or report this error"),href:this.urls.report_error,target:"galaxy_main",faIcon:"fa-bug"})},_render_rerunButton:function(){return faIconButton({title:_l("Run this job again"),href:this.urls.rerun,target:"galaxy_main",faIcon:"fa-refresh"})},_render_visualizationsButton:function(){var g=this.model.get("visualizations");if((!this.model.hasData())||(_.isEmpty(g))){return null}if(_.isObject(g[0])){return this._render_visualizationsFrameworkButton(g)}if(!this.urls.visualization){return null}var i=this.model.get("dbkey"),l=this.urls.visualization,j={},m={dataset_id:this.model.get("id"),hda_ldda:"hda"};if(i){m.dbkey=i}var h=faIconButton({title:_l("Visualize"),href:this.urls.visualization,faIcon:"fa-bar-chart-o"});function k(n){switch(n){case"trackster":return b(l,m,i);case"scatterplot":return e(l,m);default:return function(){Galaxy.frame.add({title:"Visualization",type:"url",content:l+"/"+n+"?"+$.param(m)})}}}if(g.length===1){h.attr("title",g[0]);h.click(k(g[0]))}else{_.each(g,function(o){var n=o.charAt(0).toUpperCase()+o.slice(1);j[_l(n)]=k(o)});make_popupmenu(h,j)}return h},_render_visualizationsFrameworkButton:function(g){if(!(this.model.hasData())||!(g&&!_.isEmpty(g))){return null}var i=faIconButton({title:_l("Visualize"),faIcon:"fa-bar-chart-o"});i.addClass("visualize-icon");if(_.keys(g).length===1){i.attr("title",_.keys(g)[0]);i.attr("href",_.values(g)[0])}else{var j=[];_.each(g,function(k){j.push(k)});var h=new PopupMenu(i,j)}return i},_render_body_failed_metadata:function(){var h=$("<a/>").attr({href:this.urls.edit,target:"galaxy_main"}).text(_l("set it manually or retry auto-detection")),g=$("<span/>").text(". "+_l("You may be able to")+" ").append(h),i=a.HDABaseView.prototype._render_body_failed_metadata.call(this);i.find(".warningmessagesmall strong").append(g);return i},_render_body_error:function(){var g=a.HDABaseView.prototype._render_body_error.call(this);g.find(".dataset-actions .left").prepend(this._render_errButton());return g},_render_body_ok:function(){var g=a.HDABaseView.prototype._render_body_ok.call(this);if(this.model.isDeletedOrPurged()){return g}this.makeDbkeyEditLink(g);if(this.hasUser){g.find(".dataset-actions .left").append(this._render_visualizationsButton());this._renderTags(g);this._renderAnnotation(g)}return g},_renderTags:function(g){this.tagsEditor=new TagsEditor({model:this.model,el:g.find(".tags-display"),onshowFirstTime:function(){this.render()},$activator:faIconButton({title:_l("Edit dataset tags"),classes:"dataset-tag-btn",faIcon:"fa-tags"}).appendTo(g.find(".dataset-actions .right"))})},_renderAnnotation:function(g){this.annotationEditor=new AnnotationEditor({model:this.model,el:g.find(".annotation-display"),onshowFirstTime:function(){this.render()},$activator:faIconButton({title:_l("Edit dataset annotation"),classes:"dataset-annotate-btn",faIcon:"fa-comment"}).appendTo(g.find(".dataset-actions .right"))})},makeDbkeyEditLink:function(g){if(this.model.get("metadata_dbkey")==="?"&&!this.model.isDeletedOrPurged()){g.find(".dataset-dbkey .value").replaceWith($('<a target="galaxy_main">?</a>').attr("href",this.urls.edit))}},events:{"click .dataset-title-bar":"toggleBodyVisibility","click .dataset-undelete":function(g){this.model.undelete();return false},"click .dataset-unhide":function(g){this.model.unhide();return false},"click .dataset-purge":"confirmPurge"},confirmPurge:function c(g){this.model.purge();return false},toString:function(){var g=(this.model)?(this.model+""):("(no model)");return"HDAView("+g+")"}});function e(g,h){action=function(){Galaxy.frame.add({title:"Scatterplot",type:"url",content:g+"/scatterplot?"+$.param(h),target:"galaxy_main",scratchbook:true});$("div.popmenu-wrapper").remove();return false};return action}function b(g,i,h){return function(){var j={};if(h){j["f-dbkey"]=h}$.ajax({url:g+"/list_tracks?"+$.param(j),dataType:"html",error:function(){alert(("Could not add this dataset to browser")+".")},success:function(k){var l=window.parent;l.Galaxy.modal.show({title:"View Data in a New or Saved Visualization",buttons:{Cancel:function(){l.Galaxy.modal.hide()},"View in saved visualization":function(){l.Galaxy.modal.show({title:"Add Data to Saved Visualization",body:k,buttons:{Cancel:function(){l.Galaxy.modal.hide()},"Add to visualization":function(){$(l.document).find("input[name=id]:checked").each(function(){l.Galaxy.modal.hide();var m=$(this).val();i.id=m;l.Galaxy.frame.add({title:"Trackster",type:"url",content:g+"/trackster?"+$.param(i),scratchbook:true})})}}})},"View in new visualization":function(){l.Galaxy.modal.hide();var m=g+"/trackster?"+$.param(i);l.Galaxy.frame.add({title:"Trackster",type:"url",content:m,scratchbook:true})}}})}});return false}}return{HDAEditView:f}}); \ No newline at end of file

diff -r 9493825685ee557c4a33b37614b22c4c21463219 -r 59970693121175aacf9d9ca75f012104d7e5db08 static/scripts/packed/mvc/dataset/hda-model.js --- a/static/scripts/packed/mvc/dataset/hda-model.js +++ b/static/scripts/packed/mvc/dataset/hda-model.js @@ -1,1 +1,1 @@ -define([],function(){var d=Backbone.Model.extend(LoggableMixin).extend({defaults:{history_id:null,model_class:"HistoryDatasetAssociation",hid:0,id:null,name:"(unnamed dataset)",state:"new",deleted:false,visible:true,accessible:true,purged:false,data_type:null,file_size:0,file_ext:"",meta_files:[],misc_blurb:"",misc_info:"",tags:null},urlRoot:"api/histories/",url:function(){return this.urlRoot+this.get("history_id")+"/contents/"+this.get("id")},urls:function(){var i=this.get("id");if(!i){return{}}var h={purge:galaxy_config.root+"datasets/"+i+"/purge_async",display:galaxy_config.root+"datasets/"+i+"/display/?preview=True",edit:galaxy_config.root+"datasets/"+i+"/edit",download:galaxy_config.root+"datasets/"+i+"/display?to_ext="+this.get("file_ext"),report_error:galaxy_config.root+"dataset/errors?id="+i,rerun:galaxy_config.root+"tool_runner/rerun?id="+i,show_params:galaxy_config.root+"datasets/"+i+"/show_params",visualization:galaxy_config.root+"visualization",annotation:{get:galaxy_config.root+"dataset/get_annotation_async?id="+i,set:galaxy_config.root+"dataset/annotate_async?id="+i},tags:{get:galaxy_config.root+"tag/get_tagging_elt_async?item_id="+i+"&item_class=HistoryDatasetAssociation",set:galaxy_config.root+"tag/retag?item_id="+i+"&item_class=HistoryDatasetAssociation"},meta_download:galaxy_config.root+"dataset/get_metadata_file?hda_id="+i+"&metadata_name="};return h},initialize:function(h){this.log(this+".initialize",this.attributes);this.log("\tparent history_id: "+this.get("history_id"));if(!this.get("accessible")){this.set("state",d.STATES.NOT_VIEWABLE)}this._setUpListeners()},_setUpListeners:function(){this.on("change:state",function(i,h){this.log(this+" has changed state:",i,h);if(this.inReadyState()){this.trigger("state:ready",i,h,this.previous("state"))}})},toJSON:function(){var h=Backbone.Model.prototype.toJSON.call(this);h.misc_info=jQuery.trim(h.misc_info);return h},isDeletedOrPurged:function(){return(this.get("deleted")||this.get("purged"))},isVisible:function(i,j){var h=true;if((!i)&&(this.get("deleted")||this.get("purged"))){h=false}if((!j)&&(!this.get("visible"))){h=false}return h},hidden:function(){return !this.get("visible")},inReadyState:function(){var h=_.contains(d.READY_STATES,this.get("state"));return(this.isDeletedOrPurged()||h)},hasDetails:function(){return _.has(this.attributes,"genome_build")},hasData:function(){return(this.get("file_size")>0)},"delete":function c(h){return this.save({deleted:true},h)},undelete:function a(h){return this.save({deleted:false},h)},hide:function b(h){return this.save({visible:false},h)},unhide:function g(h){return this.save({visible:true},h)},purge:function f(h){h=h||{};h.url=galaxy_config.root+"datasets/"+this.get("id")+"/purge_async";var i=this,j=jQuery.ajax(h);j.done(function(m,k,l){i.set("purged",true)});j.fail(function(o,k,n){var l=_l("Unable to purge this dataset");var m=("Removal of datasets by users is not allowed in this Galaxy instance");if(o.responseJSON&&o.responseJSON.error){l=o.responseJSON.error}else{if(o.responseText.indexOf(m)!==-1){l=m}}o.responseText=l;i.trigger("error",i,o,h,_l(l),{error:l})})},searchKeys:["name","file_ext","genome_build","misc_blurb","misc_info","annotation","tags"],search:function(h){var i=this;h=h.toLowerCase();return _.filter(this.searchKeys,function(k){var j=i.get(k);return(_.isString(j)&&j.toLowerCase().indexOf(h)!==-1)})},matches:function(h){return !!this.search(h).length},toString:function(){var h=this.get("id")||"";if(this.get("name")){h=this.get("hid")+' :"'+this.get("name")+'",'+h}return"HDA("+h+")"}});d.STATES={UPLOAD:"upload",QUEUED:"queued",RUNNING:"running",SETTING_METADATA:"setting_metadata",NEW:"new",EMPTY:"empty",OK:"ok",PAUSED:"paused",FAILED_METADATA:"failed_metadata",NOT_VIEWABLE:"noPermission",DISCARDED:"discarded",ERROR:"error"};d.READY_STATES=[d.STATES.NEW,d.STATES.OK,d.STATES.EMPTY,d.STATES.PAUSED,d.STATES.FAILED_METADATA,d.STATES.NOT_VIEWABLE,d.STATES.DISCARDED,d.STATES.ERROR];d.NOT_READY_STATES=[d.STATES.UPLOAD,d.STATES.QUEUED,d.STATES.RUNNING,d.STATES.SETTING_METADATA];var e=Backbone.Collection.extend(LoggableMixin).extend({model:d,urlRoot:galaxy_config.root+"api/histories",url:function(){return this.urlRoot+"/"+this.historyId+"/contents"},initialize:function(i,h){h=h||{};this.historyId=h.historyId},ids:function(){return this.map(function(h){return h.id})},notReady:function(){return this.filter(function(h){return !h.inReadyState()})},running:function(){var h=[];this.each(function(i){if(!i.inReadyState()){h.push(i.get("id"))}});return h},getByHid:function(h){return _.first(this.filter(function(i){return i.get("hid")===h}))},getVisible:function(h,i){return this.filter(function(j){return j.isVisible(h,i)})},fetchAllDetails:function(){return this.fetch({data:{details:"all"}})},matches:function(h){return this.filter(function(i){return i.matches(h)})},set:function(j,h){var i=this;j=_.map(j,function(l){var m=i.get(l.id);if(!m){return l}var k=m.toJSON();_.extend(k,l);return k});Backbone.Collection.prototype.set.call(this,j,h)},toString:function(){return("HDACollection()")}});return{HistoryDatasetAssociation:d,HDACollection:e}}); \ No newline at end of file +define([],function(){var d=Backbone.Model.extend(LoggableMixin).extend({defaults:{history_id:null,model_class:"HistoryDatasetAssociation",hid:0,id:null,name:"(unnamed dataset)",state:"new",deleted:false,visible:true,accessible:true,purged:false,data_type:null,file_size:0,file_ext:"",meta_files:[],misc_blurb:"",misc_info:"",tags:null},urlRoot:"/api/histories/",url:function(){return this.urlRoot+this.get("history_id")+"/contents/"+this.get("id")},urls:function(){var i=this.get("id");if(!i){return{}}var h={purge:galaxy_config.root+"datasets/"+i+"/purge_async",display:galaxy_config.root+"datasets/"+i+"/display/?preview=True",edit:galaxy_config.root+"datasets/"+i+"/edit",download:galaxy_config.root+"datasets/"+i+"/display?to_ext="+this.get("file_ext"),report_error:galaxy_config.root+"dataset/errors?id="+i,rerun:galaxy_config.root+"tool_runner/rerun?id="+i,show_params:galaxy_config.root+"datasets/"+i+"/show_params",visualization:galaxy_config.root+"visualization",annotation:{get:galaxy_config.root+"dataset/get_annotation_async?id="+i,set:galaxy_config.root+"dataset/annotate_async?id="+i},meta_download:galaxy_config.root+"dataset/get_metadata_file?hda_id="+i+"&metadata_name="};return h},initialize:function(h){this.log(this+".initialize",this.attributes);this.log("\tparent history_id: "+this.get("history_id"));if(!this.get("accessible")){this.set("state",d.STATES.NOT_VIEWABLE)}this._setUpListeners()},_setUpListeners:function(){this.on("change:state",function(i,h){this.log(this+" has changed state:",i,h);if(this.inReadyState()){this.trigger("state:ready",i,h,this.previous("state"))}})},toJSON:function(){var h=Backbone.Model.prototype.toJSON.call(this);h.misc_info=jQuery.trim(h.misc_info);return h},isDeletedOrPurged:function(){return(this.get("deleted")||this.get("purged"))},isVisible:function(i,j){var h=true;if((!i)&&(this.get("deleted")||this.get("purged"))){h=false}if((!j)&&(!this.get("visible"))){h=false}return h},hidden:function(){return !this.get("visible")},inReadyState:function(){var h=_.contains(d.READY_STATES,this.get("state"));return(this.isDeletedOrPurged()||h)},hasDetails:function(){return _.has(this.attributes,"genome_build")},hasData:function(){return(this.get("file_size")>0)},"delete":function c(h){return this.save({deleted:true},h)},undelete:function a(h){return this.save({deleted:false},h)},hide:function b(h){return this.save({visible:false},h)},unhide:function g(h){return this.save({visible:true},h)},purge:function f(h){h=h||{};h.url=galaxy_config.root+"datasets/"+this.get("id")+"/purge_async";var i=this,j=jQuery.ajax(h);j.done(function(m,k,l){i.set("purged",true)});j.fail(function(o,k,n){var l=_l("Unable to purge this dataset");var m=("Removal of datasets by users is not allowed in this Galaxy instance");if(o.responseJSON&&o.responseJSON.error){l=o.responseJSON.error}else{if(o.responseText.indexOf(m)!==-1){l=m}}o.responseText=l;i.trigger("error",i,o,h,_l(l),{error:l})})},searchKeys:["name","file_ext","genome_build","misc_blurb","misc_info","annotation","tags"],search:function(h){var i=this;h=h.toLowerCase();return _.filter(this.searchKeys,function(k){var j=i.get(k);return(_.isString(j)&&j.toLowerCase().indexOf(h)!==-1)})},matches:function(h){return !!this.search(h).length},toString:function(){var h=this.get("id")||"";if(this.get("name")){h=this.get("hid")+' :"'+this.get("name")+'",'+h}return"HDA("+h+")"}});d.STATES={UPLOAD:"upload",QUEUED:"queued",RUNNING:"running",SETTING_METADATA:"setting_metadata",NEW:"new",EMPTY:"empty",OK:"ok",PAUSED:"paused",FAILED_METADATA:"failed_metadata",NOT_VIEWABLE:"noPermission",DISCARDED:"discarded",ERROR:"error"};d.READY_STATES=[d.STATES.NEW,d.STATES.OK,d.STATES.EMPTY,d.STATES.PAUSED,d.STATES.FAILED_METADATA,d.STATES.NOT_VIEWABLE,d.STATES.DISCARDED,d.STATES.ERROR];d.NOT_READY_STATES=[d.STATES.UPLOAD,d.STATES.QUEUED,d.STATES.RUNNING,d.STATES.SETTING_METADATA];var e=Backbone.Collection.extend(LoggableMixin).extend({model:d,urlRoot:galaxy_config.root+"api/histories",url:function(){return this.urlRoot+"/"+this.historyId+"/contents"},initialize:function(i,h){h=h||{};this.historyId=h.historyId},ids:function(){return this.map(function(h){return h.id})},notReady:function(){return this.filter(function(h){return !h.inReadyState()})},running:function(){var h=[];this.each(function(i){if(!i.inReadyState()){h.push(i.get("id"))}});return h},getByHid:function(h){return _.first(this.filter(function(i){return i.get("hid")===h}))},getVisible:function(h,i){return this.filter(function(j){return j.isVisible(h,i)})},fetchAllDetails:function(){return this.fetch({data:{details:"all"}})},matches:function(h){return this.filter(function(i){return i.matches(h)})},set:function(j,h){var i=this;j=_.map(j,function(l){var m=i.get(l.id);if(!m){return l}var k=m.toJSON();_.extend(k,l);return k});Backbone.Collection.prototype.set.call(this,j,h)},toString:function(){return("HDACollection()")}});return{HistoryDatasetAssociation:d,HDACollection:e}}); \ No newline at end of file

diff -r 9493825685ee557c4a33b37614b22c4c21463219 -r 59970693121175aacf9d9ca75f012104d7e5db08 static/scripts/packed/mvc/history/history-panel.js --- a/static/scripts/packed/mvc/history/history-panel.js +++ b/static/scripts/packed/mvc/history/history-panel.js @@ -1,1 +1,1 @@ -define(["mvc/history/history-model","mvc/dataset/hda-base","mvc/dataset/hda-edit"],function(d,b,a){var c=Backbone.View.extend(LoggableMixin).extend({HDAView:a.HDAEditView,tagName:"div",className:"history-panel",fxSpeed:"fast",datasetsSelector:".datasets-list",emptyMsgSelector:".empty-history-message",msgsSelector:".message-container",initialize:function(e){e=e||{};if(e.logger){this.logger=e.logger}this.log(this+".initialize:",e);this._setUpListeners();this.hdaViews={};this.indicator=new LoadingIndicator(this.$el);if(this.model){this._setUpWebStorage(e.initiallyExpanded,e.show_deleted,e.show_hidden);this._setUpModelEventHandlers()}if(e.onready){e.onready.call(this)}},_setUpListeners:function(){this.on("error",function(f,i,e,h,g){this.errorHandler(f,i,e,h,g)});this.on("loading-history",function(){this.showLoadingIndicator("loading history...")});this.on("loading-done",function(){this.hideLoadingIndicator()});this.once("rendered",function(){this.trigger("rendered:initial",this);return false});this.on("switched-history current-history new-history",function(){if(_.isEmpty(this.hdaViews)){this.trigger("empty-history",this)}});if(this.logger){this.on("all",function(e){this.log(this+"",arguments)},this)}},errorHandler:function(g,j,f,i,h){var e=this._parseErrorMessage(g,j,f,i,h);if(j&&j.status===0&&j.readyState===0){}else{if(j&&j.status===502){}else{if(!this.$el.find(this.msgsSelector).is(":visible")){this.once("rendered",function(){this.displayMessage("error",e.message,e.details)})}else{this.displayMessage("error",e.message,e.details)}}}},_parseErrorMessage:function(h,l,g,k,j){var f=Galaxy.currUser,e={message:this._bePolite(k),details:{user:(f instanceof User)?(f.toJSON()):(f+""),source:(h instanceof Backbone.Model)?(h.toJSON()):(h+""),xhr:l,options:(l)?(_.omit(g,"xhr")):(g)}};_.extend(e.details,j||{});if(l&&_.isFunction(l.getAllResponseHeaders)){var i=l.getAllResponseHeaders();i=_.compact(i.split("\n"));i=_.map(i,function(m){return m.split(": ")});e.details.xhr.responseHeaders=_.object(i)}return e},_bePolite:function(e){e=e||_l("An error occurred while getting updates from the server");return e+". "+_l("Please contact a Galaxy administrator if the problem persists.")},loadCurrentHistory:function(f){var e=this;return this.loadHistoryWithHDADetails("current",f).then(function(h,g){e.trigger("current-history",e)})},switchToHistory:function(h,g){var e=this,f=function(){return jQuery.post(galaxy_config.root+"api/histories/"+h+"/set_as_current")};return this.loadHistoryWithHDADetails(h,g,f).then(function(j,i){e.trigger("switched-history",e)})},createNewHistory:function(g){var e=this,f=function(){return jQuery.post(galaxy_config.root+"api/histories",{current:true})};return this.loadHistory(undefined,g,f).then(function(i,h){e.trigger("new-history",e)})},loadHistoryWithHDADetails:function(h,g,f,j){var e=this,i=function(k){return e.getExpandedHdaIds(k.id)};return this.loadHistory(h,g,f,j,i)},loadHistory:function(h,g,f,k,i){this.trigger("loading-history",this);g=g||{};var e=this;var j=d.History.getHistoryData(h,{historyFn:f,hdaFn:k,hdaDetailIds:g.initiallyExpanded||i});return this._loadHistoryFromXHR(j,g).fail(function(n,l,m){e.trigger("error",e,n,g,_l("An error was encountered while "+l),{historyId:h,history:m||{}})}).always(function(){e.trigger("loading-done",e)})},_loadHistoryFromXHR:function(g,f){var e=this;g.then(function(h,i){e.setModel(h,i,f)});g.fail(function(i,h){e.render()});return g},setModel:function(g,e,f){f=f||{};if(this.model){this.model.clearUpdateTimeout();this.stopListening(this.model);this.stopListening(this.model.hdas)}this.hdaViews={};if(Galaxy&&Galaxy.currUser){g.user=Galaxy.currUser.toJSON()}this.model=new d.History(g,e,f);this._setUpWebStorage(f.initiallyExpanded,f.show_deleted,f.show_hidden);this._setUpModelEventHandlers();this.trigger("new-model",this);this.render();return this},refreshHdas:function(f,e){if(this.model){return this.model.refresh(f,e)}return $.when()},_setUpWebStorage:function(f,e,g){this.storage=new PersistentStorage(this._getStorageKey(this.model.get("id")),{expandedHdas:{},show_deleted:false,show_hidden:false});this.log(this+" (prev) storage:",JSON.stringify(this.storage.get(),null,2));if(f){this.storage.set("exandedHdas",f)}if((e===true)||(e===false)){this.storage.set("show_deleted",e)}if((g===true)||(g===false)){this.storage.set("show_hidden",g)}this.show_deleted=this.storage.get("show_deleted");this.show_hidden=this.storage.get("show_hidden");this.trigger("new-storage",this.storage,this);this.log(this+" (init'd) storage:",this.storage.get())},_getStorageKey:function(e){if(!e){throw new Error("_getStorageKey needs valid id: "+e)}return("history:"+e)},clearWebStorage:function(){for(var e in sessionStorage){if(e.indexOf("history:")===0){sessionStorage.removeItem(e)}}},getStoredOptions:function(f){if(!f||f==="current"){return(this.storage)?(this.storage.get()):({})}var e=sessionStorage.getItem(this._getStorageKey(f));return(e===null)?({}):(JSON.parse(e))},getExpandedHdaIds:function(e){var f=this.getStoredOptions(e).expandedHdas;return((_.isEmpty(f))?([]):(_.keys(f)))},_setUpModelEventHandlers:function(){this.model.on("error error:hdas",function(f,h,e,g){this.errorHandler(f,h,e,g)},this);this.model.on("change:nice_size",this.updateHistoryDiskSize,this);if(Galaxy&&Galaxy.quotaMeter){this.listenTo(this.model,"change:nice_size",function(){Galaxy.quotaMeter.update()})}this.model.hdas.on("add",this.addHdaView,this);this.model.hdas.on("change:deleted",this.handleHdaDeletionChange,this);this.model.hdas.on("change:visible",this.handleHdaVisibleChange,this);this.model.hdas.on("change:purged",function(e){this.model.fetch()},this);this.model.hdas.on("state:ready",function(f,g,e){if((!f.get("visible"))&&(!this.storage.get("show_hidden"))){this.removeHdaView(this.hdaViews[f.id])}},this)},addHdaView:function(h){this.log("add."+this,h);var f=this;if(!h.isVisible(this.storage.get("show_deleted"),this.storage.get("show_hidden"))){return}$({}).queue([function g(j){var i=f.$el.find(f.emptyMsgSelector);if(i.is(":visible")){i.fadeOut(f.fxSpeed,j)}else{j()}},function e(j){f.scrollToTop();var i=f.$el.find(f.datasetsSelector);f.createHdaView(h).$el.hide().prependTo(i).slideDown(f.fxSpeed)}])},createHdaView:function(g){var f=g.get("id"),e=this.storage.get("expandedHdas").get(f),h=new this.HDAView({model:g,expanded:e,hasUser:this.model.hasUser(),logger:this.logger});this._setUpHdaListeners(h);this.hdaViews[f]=h;return h.render()},_setUpHdaListeners:function(f){var e=this;f.on("body-expanded",function(g){e.storage.get("expandedHdas").set(g,true)});f.on("body-collapsed",function(g){e.storage.get("expandedHdas").deleteKey(g)});f.on("error",function(h,j,g,i){e.errorHandler(h,j,g,i)})},handleHdaDeletionChange:function(e){if(e.get("deleted")&&!this.storage.get("show_deleted")){this.removeHdaView(this.hdaViews[e.id])}},handleHdaVisibleChange:function(e){if(e.hidden()&&!this.storage.get("show_hidden")){this.removeHdaView(this.hdaViews[e.id])}},removeHdaView:function(f){if(!f){return}var e=this;f.$el.fadeOut(e.fxSpeed,function(){f.off();f.remove();delete e.hdaViews[f.model.id];if(_.isEmpty(e.hdaViews)){e.$el.find(e.emptyMsgSelector).fadeIn(e.fxSpeed,function(){e.trigger("empty-history",e)})}})},render:function(g){var e=this,f;if(this.model){f=this.renderModel()}else{f=this.renderWithoutModel()}$(e).queue("fx",[function(h){if(e.$el.is(":visible")){e.$el.fadeOut(e.fxSpeed,h)}else{h()}},function(h){e.$el.empty();if(f){e.$el.append(f.children())}e.$el.fadeIn(e.fxSpeed,h)},function(h){if(g){g.call(this)}e.trigger("rendered",this)}]);return this},renderWithoutModel:function(){var e=$("<div/>"),f=$("<div/>").addClass("message-container").css({"margin-left":"4px","margin-right":"4px"});return e.append(f)},renderModel:function(){var e=$("<div/>");if(Galaxy.currUser.isAnonymous()){e.append(c.templates.anonHistoryPanel(this.model.toJSON()))}else{e.append(c.templates.historyPanel(this.model.toJSON()));e.find(".history-secondary-actions").append([this._render_tagButton(),this._render_annotateButton()]);this.tagsEditor=new TagsEditor({model:this.model,el:e.find(".history-controls .tags-display")}).render()}this._setUpBehaviours(e);if(!this.model.hdas.length||!this.renderHdas(e.find(this.datasetsSelector))){e.find(this.emptyMsgSelector).show()}return e},_render_tagButton:function(){return faIconButton({title:_l("Edit history tags"),classes:"history-tag-button",faIcon:"fa-tags"})},_render_annotateButton:function(){return faIconButton({title:_l("Edit history tags"),classes:"history-annotate-button",faIcon:"fa-comment"})},_setUpBehaviours:function(e){e=e||this.$el;e.find("[title]").tooltip({placement:"bottom"});if(!this.model||!Galaxy.currUser||Galaxy.currUser.isAnonymous()){return}var f=this,g=e.find(".history-controls .annotation-display");e.find(".history-controls .history-annotate-button").click(function(){if(g.is(":hidden")){var h=f.$el.find(".history-controls .annotation");h.text(jQuery.trim(h.text()));g.slideDown(f.fxSpeed)}else{g.slideUp(f.fxSpeed)}return false});e.find(".history-name").make_text_editable({on_finish:function(h){e.find(".history-name").text(h);f.model.save({name:h}).fail(function(){e.find(".history-name").text(f.model.previous("name"))})}});e.find(".history-controls .annotation").make_text_editable({use_textarea:true,on_finish:function(h){e.find(".history-controls .annotation").text(h);f.model.save({annotation:h}).fail(function(){e.find(".history-controls .annotation").text(f.model.previous("annotation"))})}})},renderHdas:function(f){this.hdaViews={};var e=this,g=this.model.hdas.getVisible(this.storage.get("show_deleted"),this.storage.get("show_hidden"));_.each(g,function(h){f.prepend(e.createHdaView(h).$el)});return g.length},events:{"click .history-tag-button":"displayTags","click .message-container":"clearMessages"},updateHistoryDiskSize:function(){this.$el.find(".history-size").text(this.model.get("nice_size"))},collapseAllHdaBodies:function(){_.each(this.hdaViews,function(e){e.toggleBodyVisibility(null,false)});this.storage.set("expandedHdas",{})},toggleShowDeleted:function(){this.storage.set("show_deleted",!this.storage.get("show_deleted"));this.render();return this.storage.get("show_deleted")},toggleShowHidden:function(){this.storage.set("show_hidden",!this.storage.get("show_hidden"));this.render();return this.storage.get("show_hidden")},displayTags:function(e){this.$el.find(".history-controls .tags-display").slideToggle(this.fxSpeed);return false},showLoadingIndicator:function(f,e,g){e=(e!==undefined)?(e):(this.fxSpeed);if(!this.indicator){this.indicator=new LoadingIndicator(this.$el,this.$el.parent())}if(!this.$el.is(":visible")){this.indicator.show(0,g)}else{this.$el.fadeOut(e);this.indicator.show(f,e,g)}},hideLoadingIndicator:function(e,f){e=(e!==undefined)?(e):(this.fxSpeed);if(this.indicator){this.indicator.hide(e,f)}},displayMessage:function(j,k,i){var g=this;this.scrollToTop();var h=this.$el.find(this.msgsSelector),e=$("<div/>").addClass(j+"message").html(k);if(!_.isEmpty(i)){var f=$('<a href="javascript:void(0)">Details</a>').click(function(){Galaxy.modal.show(g.messageToModalOptions(j,k,i));return false});e.append(" ",f)}return h.html(e)},messageToModalOptions:function(i,k,h){var e=this,j=$("<div/>"),g={title:"Details"};function f(l){l=_.omit(l,_.functions(l));return["<table>",_.map(l,function(n,m){n=(_.isObject(n))?(f(n)):(n);return'<tr><td style="vertical-align: top; color: grey">'+m+'</td><td style="padding-left: 8px">'+n+"</td></tr>"}).join(""),"</table>"].join("")}if(_.isObject(h)){g.body=j.append(f(h))}else{g.body=j.html(h)}g.buttons={Ok:function(){Galaxy.modal.hide();e.clearMessages()}};return g},clearMessages:function(){var e=this.$el.find(this.msgsSelector);e.empty()},scrollPosition:function(){return this.$el.parent().scrollTop()},scrollTo:function(e){this.$el.parent().scrollTop(e)},scrollToTop:function(){this.$el.parent().scrollTop(0);return this},scrollIntoView:function(f,g){if(!g){this.$el.parent().parent().scrollTop(f);return this}var e=window,h=this.$el.parent().parent(),j=$(e).innerHeight(),i=(j/2)-(g/2);$(h).scrollTop(f-i);return this},scrollToId:function(f){if((!f)||(!this.hdaViews[f])){return this}var e=this.hdaViews[f].$el;this.scrollIntoView(e.offset().top,e.outerHeight());return this},scrollToHid:function(e){var f=this.model.hdas.getByHid(e);if(!f){return this}return this.scrollToId(f.id)},connectToQuotaMeter:function(e){if(!e){return this}this.listenTo(e,"quota:over",this.showQuotaMessage);this.listenTo(e,"quota:under",this.hideQuotaMessage);this.on("rendered rendered:initial",function(){if(e&&e.isOverQuota()){this.showQuotaMessage()}});return this},showQuotaMessage:function(){var e=this.$el.find(".quota-message");if(e.is(":hidden")){e.slideDown(this.fxSpeed)}},hideQuotaMessage:function(){var e=this.$el.find(".quota-message");if(!e.is(":hidden")){e.slideUp(this.fxSpeed)}},connectToOptionsMenu:function(e){if(!e){return this}this.on("new-storage",function(g,f){if(e&&g){e.findItemByHtml(_l("Include Deleted Datasets")).checked=g.get("show_deleted");e.findItemByHtml(_l("Include Hidden Datasets")).checked=g.get("show_hidden")}});return this},toString:function(){return"HistoryPanel("+((this.model)?(this.model.get("name")):(""))+")"}});c.templates={historyPanel:Handlebars.templates["template-history-historyPanel"],anonHistoryPanel:Handlebars.templates["template-history-historyPanel-anon"]};return{HistoryPanel:c}}); \ No newline at end of file +define(["mvc/history/history-model","mvc/dataset/hda-base","mvc/dataset/hda-edit"],function(d,b,a){var c=Backbone.View.extend(LoggableMixin).extend({HDAView:a.HDAEditView,tagName:"div",className:"history-panel",fxSpeed:"fast",datasetsSelector:".datasets-list",emptyMsgSelector:".empty-history-message",msgsSelector:".message-container",initialize:function(e){e=e||{};if(e.logger){this.logger=e.logger}this.log(this+".initialize:",e);this._setUpListeners();this.hdaViews={};this.indicator=new LoadingIndicator(this.$el);if(this.model){this._setUpWebStorage(e.initiallyExpanded,e.show_deleted,e.show_hidden);this._setUpModelEventHandlers()}if(e.onready){e.onready.call(this)}},_setUpListeners:function(){this.on("error",function(f,i,e,h,g){this.errorHandler(f,i,e,h,g)});this.on("loading-history",function(){this.showLoadingIndicator("loading history...")});this.on("loading-done",function(){this.hideLoadingIndicator()});this.once("rendered",function(){this.trigger("rendered:initial",this);return false});this.on("switched-history current-history new-history",function(){if(_.isEmpty(this.hdaViews)){this.trigger("empty-history",this)}});if(this.logger){this.on("all",function(e){this.log(this+"",arguments)},this)}},errorHandler:function(g,j,f,i,h){var e=this._parseErrorMessage(g,j,f,i,h);if(j&&j.status===0&&j.readyState===0){}else{if(j&&j.status===502){}else{if(!this.$el.find(this.msgsSelector).is(":visible")){this.once("rendered",function(){this.displayMessage("error",e.message,e.details)})}else{this.displayMessage("error",e.message,e.details)}}}},_parseErrorMessage:function(h,l,g,k,j){var f=Galaxy.currUser,e={message:this._bePolite(k),details:{user:(f instanceof User)?(f.toJSON()):(f+""),source:(h instanceof Backbone.Model)?(h.toJSON()):(h+""),xhr:l,options:(l)?(_.omit(g,"xhr")):(g)}};_.extend(e.details,j||{});if(l&&_.isFunction(l.getAllResponseHeaders)){var i=l.getAllResponseHeaders();i=_.compact(i.split("\n"));i=_.map(i,function(m){return m.split(": ")});e.details.xhr.responseHeaders=_.object(i)}return e},_bePolite:function(e){e=e||_l("An error occurred while getting updates from the server");return e+". "+_l("Please contact a Galaxy administrator if the problem persists.")},loadCurrentHistory:function(f){var e=this;return this.loadHistoryWithHDADetails("current",f).then(function(h,g){e.trigger("current-history",e)})},switchToHistory:function(h,g){var e=this,f=function(){return jQuery.post(galaxy_config.root+"api/histories/"+h+"/set_as_current")};return this.loadHistoryWithHDADetails(h,g,f).then(function(j,i){e.trigger("switched-history",e)})},createNewHistory:function(g){var e=this,f=function(){return jQuery.post(galaxy_config.root+"api/histories",{current:true})};return this.loadHistory(undefined,g,f).then(function(i,h){e.trigger("new-history",e)})},loadHistoryWithHDADetails:function(h,g,f,j){var e=this,i=function(k){return e.getExpandedHdaIds(k.id)};return this.loadHistory(h,g,f,j,i)},loadHistory:function(h,g,f,k,i){this.trigger("loading-history",this);g=g||{};var e=this;var j=d.History.getHistoryData(h,{historyFn:f,hdaFn:k,hdaDetailIds:g.initiallyExpanded||i});return this._loadHistoryFromXHR(j,g).fail(function(n,l,m){e.trigger("error",e,n,g,_l("An error was encountered while "+l),{historyId:h,history:m||{}})}).always(function(){e.trigger("loading-done",e)})},_loadHistoryFromXHR:function(g,f){var e=this;g.then(function(h,i){e.setModel(h,i,f)});g.fail(function(i,h){e.render()});return g},setModel:function(g,e,f){f=f||{};if(this.model){this.model.clearUpdateTimeout();this.stopListening(this.model);this.stopListening(this.model.hdas)}this.hdaViews={};if(Galaxy&&Galaxy.currUser){g.user=Galaxy.currUser.toJSON()}this.model=new d.History(g,e,f);this._setUpWebStorage(f.initiallyExpanded,f.show_deleted,f.show_hidden);this._setUpModelEventHandlers();this.trigger("new-model",this);this.render();return this},refreshHdas:function(f,e){if(this.model){return this.model.refresh(f,e)}return $.when()},_setUpWebStorage:function(f,e,g){this.storage=new PersistentStorage(this._getStorageKey(this.model.get("id")),{expandedHdas:{},show_deleted:false,show_hidden:false});this.log(this+" (prev) storage:",JSON.stringify(this.storage.get(),null,2));if(f){this.storage.set("exandedHdas",f)}if((e===true)||(e===false)){this.storage.set("show_deleted",e)}if((g===true)||(g===false)){this.storage.set("show_hidden",g)}this.show_deleted=this.storage.get("show_deleted");this.show_hidden=this.storage.get("show_hidden");this.trigger("new-storage",this.storage,this);this.log(this+" (init'd) storage:",this.storage.get())},_getStorageKey:function(e){if(!e){throw new Error("_getStorageKey needs valid id: "+e)}return("history:"+e)},clearWebStorage:function(){for(var e in sessionStorage){if(e.indexOf("history:")===0){sessionStorage.removeItem(e)}}},getStoredOptions:function(f){if(!f||f==="current"){return(this.storage)?(this.storage.get()):({})}var e=sessionStorage.getItem(this._getStorageKey(f));return(e===null)?({}):(JSON.parse(e))},getExpandedHdaIds:function(e){var f=this.getStoredOptions(e).expandedHdas;return((_.isEmpty(f))?([]):(_.keys(f)))},_setUpModelEventHandlers:function(){this.model.on("error error:hdas",function(f,h,e,g){this.errorHandler(f,h,e,g)},this);this.model.on("change:nice_size",this.updateHistoryDiskSize,this);if(Galaxy&&Galaxy.quotaMeter){this.listenTo(this.model,"change:nice_size",function(){Galaxy.quotaMeter.update()})}this.model.hdas.on("add",this.addHdaView,this);this.model.hdas.on("change:deleted",this.handleHdaDeletionChange,this);this.model.hdas.on("change:visible",this.handleHdaVisibleChange,this);this.model.hdas.on("change:purged",function(e){this.model.fetch()},this);this.model.hdas.on("state:ready",function(f,g,e){if((!f.get("visible"))&&(!this.storage.get("show_hidden"))){this.removeHdaView(this.hdaViews[f.id])}},this)},addHdaView:function(h){this.log("add."+this,h);var f=this;if(!h.isVisible(this.storage.get("show_deleted"),this.storage.get("show_hidden"))){return}$({}).queue([function g(j){var i=f.$el.find(f.emptyMsgSelector);if(i.is(":visible")){i.fadeOut(f.fxSpeed,j)}else{j()}},function e(j){f.scrollToTop();var i=f.$el.find(f.datasetsSelector);f.createHdaView(h).$el.hide().prependTo(i).slideDown(f.fxSpeed)}])},createHdaView:function(g){var f=g.get("id"),e=this.storage.get("expandedHdas").get(f),h=new this.HDAView({model:g,expanded:e,hasUser:this.model.hasUser(),logger:this.logger});this._setUpHdaListeners(h);this.hdaViews[f]=h;return h.render()},_setUpHdaListeners:function(f){var e=this;f.on("body-expanded",function(g){e.storage.get("expandedHdas").set(g,true)});f.on("body-collapsed",function(g){e.storage.get("expandedHdas").deleteKey(g)});f.on("error",function(h,j,g,i){e.errorHandler(h,j,g,i)})},handleHdaDeletionChange:function(e){if(e.get("deleted")&&!this.storage.get("show_deleted")){this.removeHdaView(this.hdaViews[e.id])}},handleHdaVisibleChange:function(e){if(e.hidden()&&!this.storage.get("show_hidden")){this.removeHdaView(this.hdaViews[e.id])}},removeHdaView:function(f){if(!f){return}var e=this;f.$el.fadeOut(e.fxSpeed,function(){f.off();f.remove();delete e.hdaViews[f.model.id];if(_.isEmpty(e.hdaViews)){e.$el.find(e.emptyMsgSelector).fadeIn(e.fxSpeed,function(){e.trigger("empty-history",e)})}})},render:function(g){var e=this,f;if(this.model){f=this.renderModel()}else{f=this.renderWithoutModel()}$(e).queue("fx",[function(h){if(e.$el.is(":visible")){e.$el.fadeOut(e.fxSpeed,h)}else{h()}},function(h){e.$el.empty();if(f){e.$el.append(f.children())}e.$el.fadeIn(e.fxSpeed,h)},function(h){if(g){g.call(this)}e.trigger("rendered",this)}]);return this},renderWithoutModel:function(){var e=$("<div/>"),f=$("<div/>").addClass("message-container").css({"margin-left":"4px","margin-right":"4px"});return e.append(f)},renderModel:function(){var e=$("<div/>");if(Galaxy.currUser.isAnonymous()){e.append(c.templates.anonHistoryPanel(this.model.toJSON()))}else{e.append(c.templates.historyPanel(this.model.toJSON()));this._renderTags(e);this._renderAnnotation(e)}this._setUpBehaviours(e);if(!this.model.hdas.length||!this.renderHdas(e.find(this.datasetsSelector))){e.find(this.emptyMsgSelector).show()}return e},_renderTags:function(e){this.tagsEditor=new TagsEditor({model:this.model,el:e.find(".history-controls .tags-display"),onshowFirstTime:function(){this.render()},$activator:faIconButton({title:_l("Edit history tags"),classes:"history-tag-btn",faIcon:"fa-tags"}).appendTo(e.find(".history-secondary-actions"))})},_renderAnnotation:function(e){this.annotationEditor=new AnnotationEditor({model:this.model,el:e.find(".history-controls .annotation-display"),onshowFirstTime:function(){this.render()},$activator:faIconButton({title:_l("Edit history tags"),classes:"history-annotate-btn",faIcon:"fa-comment"}).appendTo(e.find(".history-secondary-actions"))})},_setUpBehaviours:function(e){e=e||this.$el;e.find("[title]").tooltip({placement:"bottom"});if(!this.model||!Galaxy.currUser||Galaxy.currUser.isAnonymous()){return}var f=this;e.find(".history-name").make_text_editable({on_finish:function(g){e.find(".history-name").text(g);f.model.save({name:g}).fail(function(){e.find(".history-name").text(f.model.previous("name"))})}})},renderHdas:function(f){this.hdaViews={};var e=this,g=this.model.hdas.getVisible(this.storage.get("show_deleted"),this.storage.get("show_hidden"));_.each(g,function(h){f.prepend(e.createHdaView(h).$el)});return g.length},events:{"click .message-container":"clearMessages"},updateHistoryDiskSize:function(){this.$el.find(".history-size").text(this.model.get("nice_size"))},collapseAllHdaBodies:function(){_.each(this.hdaViews,function(e){e.toggleBodyVisibility(null,false)});this.storage.set("expandedHdas",{})},toggleShowDeleted:function(){this.storage.set("show_deleted",!this.storage.get("show_deleted"));this.render();return this.storage.get("show_deleted")},toggleShowHidden:function(){this.storage.set("show_hidden",!this.storage.get("show_hidden"));this.render();return this.storage.get("show_hidden")},showLoadingIndicator:function(f,e,g){e=(e!==undefined)?(e):(this.fxSpeed);if(!this.indicator){this.indicator=new LoadingIndicator(this.$el,this.$el.parent())}if(!this.$el.is(":visible")){this.indicator.show(0,g)}else{this.$el.fadeOut(e);this.indicator.show(f,e,g)}},hideLoadingIndicator:function(e,f){e=(e!==undefined)?(e):(this.fxSpeed);if(this.indicator){this.indicator.hide(e,f)}},displayMessage:function(j,k,i){var g=this;this.scrollToTop();var h=this.$el.find(this.msgsSelector),e=$("<div/>").addClass(j+"message").html(k);if(!_.isEmpty(i)){var f=$('<a href="javascript:void(0)">Details</a>').click(function(){Galaxy.modal.show(g.messageToModalOptions(j,k,i));return false});e.append(" ",f)}return h.html(e)},messageToModalOptions:function(i,k,h){var e=this,j=$("<div/>"),g={title:"Details"};function f(l){l=_.omit(l,_.functions(l));return["<table>",_.map(l,function(n,m){n=(_.isObject(n))?(f(n)):(n);return'<tr><td style="vertical-align: top; color: grey">'+m+'</td><td style="padding-left: 8px">'+n+"</td></tr>"}).join(""),"</table>"].join("")}if(_.isObject(h)){g.body=j.append(f(h))}else{g.body=j.html(h)}g.buttons={Ok:function(){Galaxy.modal.hide();e.clearMessages()}};return g},clearMessages:function(){var e=this.$el.find(this.msgsSelector);e.empty()},scrollPosition:function(){return this.$el.parent().scrollTop()},scrollTo:function(e){this.$el.parent().scrollTop(e)},scrollToTop:function(){this.$el.parent().scrollTop(0);return this},scrollIntoView:function(f,g){if(!g){this.$el.parent().parent().scrollTop(f);return this}var e=window,h=this.$el.parent().parent(),j=$(e).innerHeight(),i=(j/2)-(g/2);$(h).scrollTop(f-i);return this},scrollToId:function(f){if((!f)||(!this.hdaViews[f])){return this}var e=this.hdaViews[f].$el;this.scrollIntoView(e.offset().top,e.outerHeight());return this},scrollToHid:function(e){var f=this.model.hdas.getByHid(e);if(!f){return this}return this.scrollToId(f.id)},connectToQuotaMeter:function(e){if(!e){return this}this.listenTo(e,"quota:over",this.showQuotaMessage);this.listenTo(e,"quota:under",this.hideQuotaMessage);this.on("rendered rendered:initial",function(){if(e&&e.isOverQuota()){this.showQuotaMessage()}});return this},showQuotaMessage:function(){var e=this.$el.find(".quota-message");if(e.is(":hidden")){e.slideDown(this.fxSpeed)}},hideQuotaMessage:function(){var e=this.$el.find(".quota-message");if(!e.is(":hidden")){e.slideUp(this.fxSpeed)}},connectToOptionsMenu:function(e){if(!e){return this}this.on("new-storage",function(g,f){if(e&&g){e.findItemByHtml(_l("Include Deleted Datasets")).checked=g.get("show_deleted");e.findItemByHtml(_l("Include Hidden Datasets")).checked=g.get("show_hidden")}});return this},toString:function(){return"HistoryPanel("+((this.model)?(this.model.get("name")):(""))+")"}});c.templates={historyPanel:Handlebars.templates["template-history-historyPanel"],anonHistoryPanel:Handlebars.templates["template-history-historyPanel-anon"]};return{HistoryPanel:c}}); \ No newline at end of file

diff -r 9493825685ee557c4a33b37614b22c4c21463219 -r 59970693121175aacf9d9ca75f012104d7e5db08 static/scripts/packed/mvc/tags.js --- a/static/scripts/packed/mvc/tags.js +++ b/static/scripts/packed/mvc/tags.js @@ -1,1 +1,1 @@ -var TagsEditor=Backbone.View.extend(LoggableMixin).extend({tagName:"div",className:"tags-display",initialize:function(a){this.listenTo(this.model,"change:tags",function(){this.render()})},render:function(){var a=this;this.$el.html(this.template());this.$el.find(".tags-input").select2({placeholder:"Add tags",width:"100%",tags:function(){return a.getTagsUsed()}});this._behaviors();return this},template:function(){return['<label class="prompt">',_l("Tags"),"</label>",'<input class="tags-input" value="',this.tagsToCSV(this.model.get("tags")),'" />'].join("")},tagsToCSV:function(a){if(!_.isArray(a)||_.isEmpty(a)){return""}return a.sort().join(",")},getTagsUsed:function(){return _.map(Galaxy.currUser.get("tags_used"),function(a){return{id:a,text:a}})},_behaviors:function(){var a=this;this.$el.find(".tags-input").on("change",function(b){a.model.save({tags:b.val},{silent:true});if(b.added){a.addNewTagToTagsUsed(b.added.text)}})},addNewTagToTagsUsed:function(a){var b=Galaxy.currUser.get("tags_used");if(!_.contains(b,a)){b.push(a);b.sort();Galaxy.currUser.set("tags_used",b)}},remove:function(){this.$el.off();Backbone.View.prototype.remove.call(this)},toString:function(){return["TagSetView(",this.model+"",")"].join("")}}); \ No newline at end of file +var TagsEditor=Backbone.View.extend(LoggableMixin).extend(HiddenUntilActivatedViewMixin).extend({tagName:"div",className:"tags-display",initialize:function(a){this.listenTo(this.model,"change:tags",function(){this.render()});this.hiddenUntilActivated(a.$activator,a)},render:function(){var a=this;this.$el.html(this._template());this.$input().select2({placeholder:"Add tags",width:"100%",tags:function(){return a._getTagsUsed()}});this._setUpBehaviors();return this},_template:function(){return['<label class="prompt">',_l("Tags"),"</label>",'<input class="tags-input" value="',this.tagsToCSV(),'" />'].join("")},tagsToCSV:function(){var a=this.model.get("tags");if(!_.isArray(a)||_.isEmpty(a)){return""}return a.sort().join(",")},$input:function(){return this.$el.find(".tags-input")},_getTagsUsed:function(){return Galaxy.currUser.get("tags_used")},_setUpBehaviors:function(){var a=this;this.$input().on("change",function(b){a.model.save({tags:b.val},{silent:true});if(b.added){a._addNewTagToTagsUsed(b.added.text)}})},_addNewTagToTagsUsed:function(a){var b=Galaxy.currUser.get("tags_used");if(!_.contains(b,a)){b.push(a);b.sort();Galaxy.currUser.set("tags_used",b)}},remove:function(){this.$input.off();this.stopListening(this.model);Backbone.View.prototype.remove.call(this)},toString:function(){return["TagsEditor(",this.model+"",")"].join("")}}); \ No newline at end of file

diff -r 9493825685ee557c4a33b37614b22c4c21463219 -r 59970693121175aacf9d9ca75f012104d7e5db08 static/scripts/packed/templates/compiled/history-templates.js --- a/static/scripts/packed/templates/compiled/history-templates.js +++ b/static/scripts/packed/templates/compiled/history-templates.js @@ -1,1 +1,1 @@ -(function(){var b=Handlebars.template,a=Handlebars.templates=Handlebars.templates||{};a["template-hda-body"]=b(function(h,u,s,n,B){this.compilerInfo=[4,">= 1.0.0"];s=this.merge(s,h.helpers);B=B||{};var t="",j,e="function",d=this.escapeExpression,r=this,c=s.blockHelperMissing;function q(F,E){var C="",D;C+='\n <div class="dataset-summary">\n ';if(D=s.body){D=D.call(F,{hash:{},data:E})}else{D=F.body;D=typeof D===e?D.apply(F):D}if(D||D===0){C+=D}C+='\n </div>\n <div class="dataset-actions clear">\n <div class="left"></div>\n <div class="right"></div>\n </div>\n\n ';return C}function p(F,E){var C="",D;C+='\n <div class="dataset-summary">\n ';D=s["if"].call(F,F.misc_blurb,{hash:{},inverse:r.noop,fn:r.program(4,o,E),data:E});if(D||D===0){C+=D}C+="\n\n ";D=s["if"].call(F,F.data_type,{hash:{},inverse:r.noop,fn:r.program(6,m,E),data:E});if(D||D===0){C+=D}C+="\n\n ";D=s["if"].call(F,F.metadata_dbkey,{hash:{},inverse:r.noop,fn:r.program(9,g,E),data:E});if(D||D===0){C+=D}C+="\n\n ";D=s["if"].call(F,F.misc_info,{hash:{},inverse:r.noop,fn:r.program(12,z,E),data:E});if(D||D===0){C+=D}C+='\n </div>\n\n <div class="dataset-actions clear">\n <div class="left"></div>\n <div class="right"></div>\n </div>\n\n ';D=s.unless.call(F,F.deleted,{hash:{},inverse:r.noop,fn:r.program(14,y,E),data:E});if(D||D===0){C+=D}C+="\n\n ";return C}function o(F,E){var C="",D;C+='\n <div class="dataset-blurb">\n <span class="value">';if(D=s.misc_blurb){D=D.call(F,{hash:{},data:E})}else{D=F.misc_blurb;D=typeof D===e?D.apply(F):D}C+=d(D)+"</span>\n </div>\n ";return C}function m(G,F){var C="",E,D;C+='\n <div class="dataset-datatype">\n <label class="prompt">';D={hash:{},inverse:r.noop,fn:r.program(7,l,F),data:F};if(E=s.local){E=E.call(G,D)}else{E=G.local;E=typeof E===e?E.apply(G):E}if(!s.local){E=c.call(G,E,D)}if(E||E===0){C+=E}C+='</label>\n <span class="value">';if(E=s.data_type){E=E.call(G,{hash:{},data:F})}else{E=G.data_type;E=typeof E===e?E.apply(G):E}C+=d(E)+"</span>\n </div>\n ";return C}function l(D,C){return"format"}function g(G,F){var C="",E,D;C+='\n <div class="dataset-dbkey">\n <label class="prompt">';D={hash:{},inverse:r.noop,fn:r.program(10,A,F),data:F};if(E=s.local){E=E.call(G,D)}else{E=G.local;E=typeof E===e?E.apply(G):E}if(!s.local){E=c.call(G,E,D)}if(E||E===0){C+=E}C+='</label>\n <span class="value">\n ';if(E=s.metadata_dbkey){E=E.call(G,{hash:{},data:F})}else{E=G.metadata_dbkey;E=typeof E===e?E.apply(G):E}C+=d(E)+"\n </span>\n </div>\n ";return C}function A(D,C){return"database"}function z(F,E){var C="",D;C+='\n <div class="dataset-info">\n <span 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diff -r 9493825685ee557c4a33b37614b22c4c21463219 -r 59970693121175aacf9d9ca75f012104d7e5db08 static/scripts/packed/templates/compiled/template-hda-body.js --- a/static/scripts/packed/templates/compiled/template-hda-body.js +++ b/static/scripts/packed/templates/compiled/template-hda-body.js @@ -1,1 +1,1 @@ -(function(){var b=Handlebars.template,a=Handlebars.templates=Handlebars.templates||{};a["template-hda-body"]=b(function(h,u,s,n,B){this.compilerInfo=[4,">= 1.0.0"];s=this.merge(s,h.helpers);B=B||{};var t="",j,e="function",d=this.escapeExpression,r=this,c=s.blockHelperMissing;function q(F,E){var C="",D;C+='\n <div class="dataset-summary">\n ';if(D=s.body){D=D.call(F,{hash:{},data:E})}else{D=F.body;D=typeof D===e?D.apply(F):D}if(D||D===0){C+=D}C+='\n </div>\n <div class="dataset-actions clear">\n <div class="left"></div>\n <div class="right"></div>\n </div>\n\n ';return C}function p(F,E){var C="",D;C+='\n <div class="dataset-summary">\n 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E===e?E.apply(G):E}C+=d(E)+'">';D={hash:{},inverse:r.noop,fn:r.program(21,i,F),data:F};if(E=s.local){E=E.call(G,D)}else{E=G.local;E=typeof E===e?E.apply(G):E}if(!s.local){E=c.call(G,E,D)}if(E||E===0){C+=E}C+="</a>\n ";return C}function i(E,D){var C;if(C=s.text){C=C.call(E,{hash:{},data:D})}else{C=E.text;C=typeof C===e?C.apply(E):C}return d(C)}function f(F,E){var C="",D;C+='\n <pre class="peek">';if(D=s.peek){D=D.call(F,{hash:{},data:E})}else{D=F.peek;D=typeof D===e?D.apply(F):D}if(D||D===0){C+=D}C+="</pre>\n ";return C}t+='<div class="dataset-body">\n ';j=s["if"].call(u,u.body,{hash:{},inverse:r.program(3,p,B),fn:r.program(1,q,B),data:B});if(j||j===0){t+=j}t+="\n</div>";return t})})(); \ No newline at end of file +(function(){var b=Handlebars.template,a=Handlebars.templates=Handlebars.templates||{};a["template-hda-body"]=b(function(g,r,p,k,z){this.compilerInfo=[4,">= 1.0.0"];p=this.merge(p,g.helpers);z=z||{};var q="",h,e="function",d=this.escapeExpression,o=this,c=p.blockHelperMissing;function n(D,C){var A="",B;A+='\n <div class="dataset-summary">\n ';if(B=p.body){B=B.call(D,{hash:{},data:C})}else{B=D.body;B=typeof B===e?B.apply(D):B}if(B||B===0){A+=B}A+='\n </div>\n <div class="dataset-actions clear">\n <div class="left"></div>\n <div class="right"></div>\n </div>\n\n ';return A}function m(D,C){var A="",B;A+='\n <div class="dataset-summary">\n ';B=p["if"].call(D,D.misc_blurb,{hash:{},inverse:o.noop,fn:o.program(4,l,C),data:C});if(B||B===0){A+=B}A+="\n\n ";B=p["if"].call(D,D.data_type,{hash:{},inverse:o.noop,fn:o.program(6,j,C),data:C});if(B||B===0){A+=B}A+="\n\n ";B=p["if"].call(D,D.metadata_dbkey,{hash:{},inverse:o.noop,fn:o.program(9,f,C),data:C});if(B||B===0){A+=B}A+="\n\n ";B=p["if"].call(D,D.misc_info,{hash:{},inverse:o.noop,fn:o.program(12,x,C),data:C});if(B||B===0){A+=B}A+='\n </div>\n\n <div class="dataset-actions clear">\n <div class="left"></div>\n <div class="right"></div>\n </div>\n\n ';B=p.unless.call(D,D.deleted,{hash:{},inverse:o.noop,fn:o.program(14,w,C),data:C});if(B||B===0){A+=B}A+="\n\n ";return A}function l(D,C){var A="",B;A+='\n <div class="dataset-blurb">\n <span class="value">';if(B=p.misc_blurb){B=B.call(D,{hash:{},data:C})}else{B=D.misc_blurb;B=typeof B===e?B.apply(D):B}A+=d(B)+"</span>\n </div>\n ";return A}function j(E,D){var A="",C,B;A+='\n <div class="dataset-datatype">\n <label class="prompt">';B={hash:{},inverse:o.noop,fn:o.program(7,i,D),data:D};if(C=p.local){C=C.call(E,B)}else{C=E.local;C=typeof C===e?C.apply(E):C}if(!p.local){C=c.call(E,C,B)}if(C||C===0){A+=C}A+='</label>\n <span class="value">';if(C=p.data_type){C=C.call(E,{hash:{},data:D})}else{C=E.data_type;C=typeof C===e?C.apply(E):C}A+=d(C)+"</span>\n </div>\n ";return A}function i(B,A){return"format"}function f(E,D){var A="",C,B;A+='\n <div class="dataset-dbkey">\n <label class="prompt">';B={hash:{},inverse:o.noop,fn:o.program(10,y,D),data:D};if(C=p.local){C=C.call(E,B)}else{C=E.local;C=typeof C===e?C.apply(E):C}if(!p.local){C=c.call(E,C,B)}if(C||C===0){A+=C}A+='</label>\n <span class="value">\n ';if(C=p.metadata_dbkey){C=C.call(E,{hash:{},data:D})}else{C=E.metadata_dbkey;C=typeof C===e?C.apply(E):C}A+=d(C)+"\n </span>\n </div>\n ";return A}function y(B,A){return"database"}function x(D,C){var A="",B;A+='\n <div class="dataset-info">\n <span class="value">';if(B=p.misc_info){B=B.call(D,{hash:{},data:C})}else{B=D.misc_info;B=typeof B===e?B.apply(D):B}A+=d(B)+"</span>\n </div>\n ";return A}function w(D,C){var A="",B;A+='\n <div class="tags-display"></div>\n <div class="annotation-display"></div>\n\n <div class="dataset-display-applications">\n ';B=p.each.call(D,D.display_apps,{hash:{},inverse:o.noop,fn:o.program(15,v,C),data:C});if(B||B===0){A+=B}A+="\n\n ";B=p.each.call(D,D.display_types,{hash:{},inverse:o.noop,fn:o.program(15,v,C),data:C});if(B||B===0){A+=B}A+='\n </div>\n\n <div class="dataset-peek">\n ';B=p["if"].call(D,D.peek,{hash:{},inverse:o.noop,fn:o.program(19,s,C),data:C});if(B||B===0){A+=B}A+="\n </div>\n\n ";return A}function v(D,C){var A="",B;A+='\n <div class="display-application">\n <span class="display-application-location">';if(B=p.label){B=B.call(D,{hash:{},data:C})}else{B=D.label;B=typeof B===e?B.apply(D):B}A+=d(B)+'</span>\n <span class="display-application-links">\n ';B=p.each.call(D,D.links,{hash:{},inverse:o.noop,fn:o.program(16,u,C),data:C});if(B||B===0){A+=B}A+="\n </span>\n </div>\n ";return A}function u(E,D){var A="",C,B;A+='\n <a target="';if(C=p.target){C=C.call(E,{hash:{},data:D})}else{C=E.target;C=typeof C===e?C.apply(E):C}A+=d(C)+'" href="';if(C=p.href){C=C.call(E,{hash:{},data:D})}else{C=E.href;C=typeof C===e?C.apply(E):C}A+=d(C)+'">';B={hash:{},inverse:o.noop,fn:o.program(17,t,D),data:D};if(C=p.local){C=C.call(E,B)}else{C=E.local;C=typeof C===e?C.apply(E):C}if(!p.local){C=c.call(E,C,B)}if(C||C===0){A+=C}A+="</a>\n ";return A}function t(C,B){var A;if(A=p.text){A=A.call(C,{hash:{},data:B})}else{A=C.text;A=typeof A===e?A.apply(C):A}return d(A)}function s(D,C){var A="",B;A+='\n <pre class="peek">';if(B=p.peek){B=B.call(D,{hash:{},data:C})}else{B=D.peek;B=typeof B===e?B.apply(D):B}if(B||B===0){A+=B}A+="</pre>\n ";return A}q+='<div class="dataset-body">\n ';h=p["if"].call(r,r.body,{hash:{},inverse:o.program(3,m,z),fn:o.program(1,n,z),data:z});if(h||h===0){q+=h}q+="\n</div>";return q})})(); \ No newline at end of file

diff -r 9493825685ee557c4a33b37614b22c4c21463219 -r 59970693121175aacf9d9ca75f012104d7e5db08 static/scripts/packed/templates/compiled/template-history-historyPanel.js --- a/static/scripts/packed/templates/compiled/template-history-historyPanel.js +++ b/static/scripts/packed/templates/compiled/template-history-historyPanel.js @@ -1,1 +1,1 @@ -(function(){var b=Handlebars.template,a=Handlebars.templates=Handlebars.templates||{};a["template-history-historyPanel"]=b(function(h,t,r,m,z){this.compilerInfo=[4,">= 1.0.0"];r=this.merge(r,h.helpers);z=z||{};var s="",j,f,q=this,e="function",c=r.blockHelperMissing,d=this.escapeExpression;function p(E,D){var A="",C,B;A+='\n <div class="history-name" title="';B={hash:{},inverse:q.noop,fn:q.program(2,o,D),data:D};if(C=r.local){C=C.call(E,B)}else{C=E.local;C=typeof C===e?C.apply(E):C}if(!r.local){C=c.call(E,C,B)}if(C||C===0){A+=C}A+='">\n ';if(C=r.name){C=C.call(E,{hash:{},data:D})}else{C=E.name;C=typeof C===e?C.apply(E):C}A+=d(C)+"\n </div>\n ";return A}function o(B,A){return"Click to rename history"}function n(D,C){var A="",B;A+='\n <div class="history-size">';if(B=r.nice_size){B=B.call(D,{hash:{},data:C})}else{B=D.nice_size;B=typeof B===e?B.apply(D):B}A+=d(B)+"</div>\n ";return A}function l(E,D){var A="",C,B;A+='\n <div class="warningmessagesmall"><strong>\n ';B={hash:{},inverse:q.noop,fn:q.program(7,k,D),data:D};if(C=r.local){C=C.call(E,B)}else{C=E.local;C=typeof C===e?C.apply(E):C}if(!r.local){C=c.call(E,C,B)}if(C||C===0){A+=C}A+="\n </strong></div>\n ";return A}function k(B,A){return"You are currently viewing a deleted history!"}function g(D,C){var A="",B;A+='\n \n <div class="';if(B=r.status){B=B.call(D,{hash:{},data:C})}else{B=D.status;B=typeof B===e?B.apply(D):B}A+=d(B)+'message">';if(B=r.message){B=B.call(D,{hash:{},data:C})}else{B=D.message;B=typeof B===e?B.apply(D):B}A+=d(B)+"</div>\n ";return A}function y(B,A){return"You are over your disk quota"}function x(B,A){return"Tool execution is on hold until your disk usage drops below your allocated quota"}function w(B,A){return"Annotation"}function v(B,A){return"Click to edit annotation"}function u(C,B){var A;if(A=r.annotation){A=A.call(C,{hash:{},data:B})}else{A=C.annotation;A=typeof A===e?A.apply(C):A}return d(A)}function i(B,A){return"Your history is empty. Click 'Get Data' on the left pane to start"}s+='<div class="history-controls">\n\n <div class="history-title">\n ';j=r["if"].call(t,t.name,{hash:{},inverse:q.noop,fn:q.program(1,p,z),data:z});if(j||j===0){s+=j}s+='\n </div>\n\n <div class="history-subtitle clear">\n ';j=r["if"].call(t,t.nice_size,{hash:{},inverse:q.noop,fn:q.program(4,n,z),data:z});if(j||j===0){s+=j}s+='\n\n <div class="history-secondary-actions">\n </div>\n </div>\n\n ';j=r["if"].call(t,t.deleted,{hash:{},inverse:q.noop,fn:q.program(6,l,z),data:z});if(j||j===0){s+=j}s+='\n\n <div class="message-container">\n ';j=r["if"].call(t,t.message,{hash:{},inverse:q.noop,fn:q.program(9,g,z),data:z});if(j||j===0){s+=j}s+='\n </div>\n\n <div class="quota-message errormessage">\n ';f={hash:{},inverse:q.noop,fn:q.program(11,y,z),data:z};if(j=r.local){j=j.call(t,f)}else{j=t.local;j=typeof j===e?j.apply(t):j}if(!r.local){j=c.call(t,j,f)}if(j||j===0){s+=j}s+=".\n ";f={hash:{},inverse:q.noop,fn:q.program(13,x,z),data:z};if(j=r.local){j=j.call(t,f)}else{j=t.local;j=typeof j===e?j.apply(t):j}if(!r.local){j=c.call(t,j,f)}if(j||j===0){s+=j}s+='.\n </div>\n \n \n \n <div class="tags-display"></div>\n\n \n <div class="annotation-display">\n <label class="prompt">';f={hash:{},inverse:q.noop,fn:q.program(15,w,z),data:z};if(j=r.local){j=j.call(t,f)}else{j=t.local;j=typeof j===e?j.apply(t):j}if(!r.local){j=c.call(t,j,f)}if(j||j===0){s+=j}s+='</label>\n <div class="annotation" title="';f={hash:{},inverse:q.noop,fn:q.program(17,v,z),data:z};if(j=r.local){j=j.call(t,f)}else{j=t.local;j=typeof j===e?j.apply(t):j}if(!r.local){j=c.call(t,j,f)}if(j||j===0){s+=j}s+='"\n \n >';j=r["if"].call(t,t.annotation,{hash:{},inverse:q.noop,fn:q.program(19,u,z),data:z});if(j||j===0){s+=j}s+='</div>\n </div>\n\n </div>\n\n \n <div class="datasets-list"></div>\n\n <div class="empty-history-message infomessagesmall">\n ';f={hash:{},inverse:q.noop,fn:q.program(21,i,z),data:z};if(j=r.local){j=j.call(t,f)}else{j=t.local;j=typeof j===e?j.apply(t):j}if(!r.local){j=c.call(t,j,f)}if(j||j===0){s+=j}s+="\n </div>";return s})})(); \ No newline at end of file +(function(){var b=Handlebars.template,a=Handlebars.templates=Handlebars.templates||{};a["template-history-historyPanel"]=b(function(h,s,q,l,w){this.compilerInfo=[4,">= 1.0.0"];q=this.merge(q,h.helpers);w=w||{};var r="",i,f,p=this,e="function",c=q.blockHelperMissing,d=this.escapeExpression;function o(B,A){var x="",z,y;x+='\n <div class="history-name" title="';y={hash:{},inverse:p.noop,fn:p.program(2,n,A),data:A};if(z=q.local){z=z.call(B,y)}else{z=B.local;z=typeof z===e?z.apply(B):z}if(!q.local){z=c.call(B,z,y)}if(z||z===0){x+=z}x+='">\n ';if(z=q.name){z=z.call(B,{hash:{},data:A})}else{z=B.name;z=typeof z===e?z.apply(B):z}x+=d(z)+"\n </div>\n ";return x}function n(y,x){return"Click to rename history"}function m(A,z){var x="",y;x+='\n <div class="history-size">';if(y=q.nice_size){y=y.call(A,{hash:{},data:z})}else{y=A.nice_size;y=typeof y===e?y.apply(A):y}x+=d(y)+"</div>\n ";return x}function k(B,A){var x="",z,y;x+='\n <div class="warningmessagesmall"><strong>\n ';y={hash:{},inverse:p.noop,fn:p.program(7,j,A),data:A};if(z=q.local){z=z.call(B,y)}else{z=B.local;z=typeof z===e?z.apply(B):z}if(!q.local){z=c.call(B,z,y)}if(z||z===0){x+=z}x+="\n </strong></div>\n ";return x}function j(y,x){return"You are currently viewing a deleted history!"}function g(A,z){var x="",y;x+='\n \n <div class="';if(y=q.status){y=y.call(A,{hash:{},data:z})}else{y=A.status;y=typeof y===e?y.apply(A):y}x+=d(y)+'message">';if(y=q.message){y=y.call(A,{hash:{},data:z})}else{y=A.message;y=typeof y===e?y.apply(A):y}x+=d(y)+"</div>\n ";return x}function v(y,x){return"You are over your disk quota"}function u(y,x){return"Tool execution is on hold until your disk usage drops below your allocated quota"}function t(y,x){return"Your history is empty. Click 'Get Data' on the left pane to start"}r+='<div class="history-controls">\n\n <div class="history-title">\n ';i=q["if"].call(s,s.name,{hash:{},inverse:p.noop,fn:p.program(1,o,w),data:w});if(i||i===0){r+=i}r+='\n </div>\n\n <div class="history-subtitle clear">\n ';i=q["if"].call(s,s.nice_size,{hash:{},inverse:p.noop,fn:p.program(4,m,w),data:w});if(i||i===0){r+=i}r+='\n\n <div class="history-secondary-actions">\n </div>\n </div>\n\n ';i=q["if"].call(s,s.deleted,{hash:{},inverse:p.noop,fn:p.program(6,k,w),data:w});if(i||i===0){r+=i}r+='\n\n <div class="message-container">\n ';i=q["if"].call(s,s.message,{hash:{},inverse:p.noop,fn:p.program(9,g,w),data:w});if(i||i===0){r+=i}r+='\n </div>\n\n <div class="quota-message errormessage">\n ';f={hash:{},inverse:p.noop,fn:p.program(11,v,w),data:w};if(i=q.local){i=i.call(s,f)}else{i=s.local;i=typeof i===e?i.apply(s):i}if(!q.local){i=c.call(s,i,f)}if(i||i===0){r+=i}r+=".\n ";f={hash:{},inverse:p.noop,fn:p.program(13,u,w),data:w};if(i=q.local){i=i.call(s,f)}else{i=s.local;i=typeof i===e?i.apply(s):i}if(!q.local){i=c.call(s,i,f)}if(i||i===0){r+=i}r+='.\n </div>\n \n <div class="tags-display"></div>\n <div class="annotation-display"></div>\n\n </div>\n\n \n <div class="datasets-list"></div>\n\n <div class="empty-history-message infomessagesmall">\n ';f={hash:{},inverse:p.noop,fn:p.program(15,t,w),data:w};if(i=q.local){i=i.call(s,f)}else{i=s.local;i=typeof i===e?i.apply(s):i}if(!q.local){i=c.call(s,i,f)}if(i||i===0){r+=i}r+="\n </div>";return r})})(); \ No newline at end of file

diff -r 9493825685ee557c4a33b37614b22c4c21463219 -r 59970693121175aacf9d9ca75f012104d7e5db08 static/scripts/templates/compiled/history-templates.js --- a/static/scripts/templates/compiled/history-templates.js +++ b/static/scripts/templates/compiled/history-templates.js @@ -106,63 +106,33 @@

function program14(depth0,data) {

- var buffer = "", stack1, options; - buffer += "\n " - + "\n <div class="tags-display"></div>\n\n " - + "\n <div class="annotation-display">\n <label class="prompt">"; - options = {hash:{},inverse:self.noop,fn:self.program(15, program15, data),data:data}; - if (stack1 = helpers.local) { stack1 = stack1.call(depth0, options); } - else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } - if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, options); } - if(stack1 || stack1 === 0) { buffer += stack1; } - buffer += "</label>\n <div id="dataset-"; - if (stack1 = helpers.id) { stack1 = stack1.call(depth0, {hash:{},data:data}); } - else { stack1 = depth0.id; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } - buffer += escapeExpression(stack1) - + "-annotation" class="annotation editable-text"\n title=""; - options = {hash:{},inverse:self.noop,fn:self.program(17, program17, data),data:data}; - if (stack1 = helpers.local) { stack1 = stack1.call(depth0, options); } - else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } - if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, options); } - if(stack1 || stack1 === 0) { buffer += stack1; } - buffer += ""></div>\n </div>\n\n <div class="dataset-display-applications">\n "; - stack1 = helpers.each.call(depth0, depth0.display_apps, {hash:{},inverse:self.noop,fn:self.program(19, program19, data),data:data}); + var buffer = "", stack1; + buffer += "\n <div class="tags-display"></div>\n <div class="annotation-display"></div>\n\n <div class="dataset-display-applications">\n "; + stack1 = helpers.each.call(depth0, depth0.display_apps, {hash:{},inverse:self.noop,fn:self.program(15, program15, data),data:data}); if(stack1 || stack1 === 0) { buffer += stack1; } buffer += "\n\n "; - stack1 = helpers.each.call(depth0, depth0.display_types, {hash:{},inverse:self.noop,fn:self.program(19, program19, data),data:data}); + stack1 = helpers.each.call(depth0, depth0.display_types, {hash:{},inverse:self.noop,fn:self.program(15, program15, data),data:data}); if(stack1 || stack1 === 0) { buffer += stack1; } buffer += "\n </div>\n\n <div class="dataset-peek">\n "; - stack1 = helpers['if'].call(depth0, depth0.peek, {hash:{},inverse:self.noop,fn:self.program(23, program23, data),data:data}); + stack1 = helpers['if'].call(depth0, depth0.peek, {hash:{},inverse:self.noop,fn:self.program(19, program19, data),data:data}); if(stack1 || stack1 === 0) { buffer += stack1; } buffer += "\n </div>\n\n "; return buffer; } function program15(depth0,data) {

- - return "Annotation"; - } - -function program17(depth0,data) { - - - return "Edit dataset annotation"; - } - -function program19(depth0,data) { - var buffer = "", stack1; buffer += "\n <div class="display-application">\n <span class="display-application-location">"; if (stack1 = helpers.label) { stack1 = stack1.call(depth0, {hash:{},data:data}); } else { stack1 = depth0.label; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } buffer += escapeExpression(stack1) + "</span>\n <span class="display-application-links">\n "; - stack1 = helpers.each.call(depth0, depth0.links, {hash:{},inverse:self.noop,fn:self.program(20, program20, data),data:data}); + stack1 = helpers.each.call(depth0, depth0.links, {hash:{},inverse:self.noop,fn:self.program(16, program16, data),data:data}); if(stack1 || stack1 === 0) { buffer += stack1; } buffer += "\n </span>\n </div>\n "; return buffer; } -function program20(depth0,data) { +function program16(depth0,data) {

var buffer = "", stack1, options; buffer += "\n <a target=""; @@ -174,7 +144,7 @@ else { stack1 = depth0.href; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } buffer += escapeExpression(stack1) + "">"; - options = {hash:{},inverse:self.noop,fn:self.program(21, program21, data),data:data}; + options = {hash:{},inverse:self.noop,fn:self.program(17, program17, data),data:data}; if (stack1 = helpers.local) { stack1 = stack1.call(depth0, options); } else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, options); } @@ -182,7 +152,7 @@ buffer += "</a>\n "; return buffer; } -function program21(depth0,data) { +function program17(depth0,data) {

var stack1; if (stack1 = helpers.text) { stack1 = stack1.call(depth0, {hash:{},data:data}); } @@ -190,7 +160,7 @@ return escapeExpression(stack1); }

-function program23(depth0,data) { +function program19(depth0,data) {

var buffer = "", stack1; buffer += "\n <pre class="peek">"; @@ -209,352 +179,6 @@ }); })();(function() { var template = Handlebars.template, templates = Handlebars.templates = Handlebars.templates || {}; -templates['template-hda-body'] = template(function (Handlebars,depth0,helpers,partials,data) { - this.compilerInfo = [4,'>= 1.0.0']; -helpers = this.merge(helpers, Handlebars.helpers); data = data || {}; - var buffer = "", stack1, functionType="function", escapeExpression=this.escapeExpression, self=this, blockHelperMissing=helpers.blockHelperMissing; - -function program1(depth0,data) { - - var buffer = "", stack1; - buffer += "\n <div class="dataset-summary">\n "; - if (stack1 = helpers.body) { stack1 = stack1.call(depth0, {hash:{},data:data}); } - else { stack1 = depth0.body; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } - if(stack1 || stack1 === 0) { buffer += stack1; } - buffer += "\n </div>\n <div class="dataset-actions clear">\n <div class="left"></div>\n <div class="right"></div>\n </div>\n\n "; - return buffer; - } - -function program3(depth0,data) { - - var buffer = "", stack1; - buffer += "\n <div class="dataset-summary">\n "; - stack1 = helpers['if'].call(depth0, depth0.misc_blurb, {hash:{},inverse:self.noop,fn:self.program(4, program4, data),data:data}); - if(stack1 || stack1 === 0) { buffer += stack1; } - buffer += "\n\n "; - stack1 = helpers['if'].call(depth0, depth0.data_type, {hash:{},inverse:self.noop,fn:self.program(6, program6, data),data:data}); - if(stack1 || stack1 === 0) { buffer += stack1; } - buffer += "\n\n "; - stack1 = helpers['if'].call(depth0, depth0.metadata_dbkey, {hash:{},inverse:self.noop,fn:self.program(9, program9, data),data:data}); - if(stack1 || stack1 === 0) { buffer += stack1; } - buffer += "\n\n "; - stack1 = helpers['if'].call(depth0, depth0.misc_info, {hash:{},inverse:self.noop,fn:self.program(12, program12, data),data:data}); - if(stack1 || stack1 === 0) { buffer += stack1; } - buffer += "\n </div>" - + "\n\n <div class="dataset-actions clear">\n <div class="left"></div>\n <div class="right"></div>\n </div>\n\n "; - stack1 = helpers.unless.call(depth0, depth0.deleted, {hash:{},inverse:self.noop,fn:self.program(14, program14, data),data:data}); - if(stack1 || stack1 === 0) { buffer += stack1; } - buffer += "\n\n "; - return buffer; - } -function program4(depth0,data) { - - var buffer = "", stack1; - buffer += "\n <div class="dataset-blurb">\n <span class="value">"; - if (stack1 = helpers.misc_blurb) { stack1 = stack1.call(depth0, {hash:{},data:data}); } - else { stack1 = depth0.misc_blurb; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } - buffer += escapeExpression(stack1) - + "</span>\n </div>\n "; - return buffer; - } - -function program6(depth0,data) { - - var buffer = "", stack1, options; - buffer += "\n <div class="dataset-datatype">\n <label class="prompt">"; - options = {hash:{},inverse:self.noop,fn:self.program(7, program7, data),data:data}; - if (stack1 = helpers.local) { stack1 = stack1.call(depth0, options); } - else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } - if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, options); } - if(stack1 || stack1 === 0) { buffer += stack1; } - buffer += "</label>\n <span class="value">"; - if (stack1 = helpers.data_type) { stack1 = stack1.call(depth0, {hash:{},data:data}); } - else { stack1 = depth0.data_type; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } - buffer += escapeExpression(stack1) - + "</span>\n </div>\n "; - return buffer; - } -function program7(depth0,data) { - - - return "format"; - } - -function program9(depth0,data) { - - var buffer = "", stack1, options; - buffer += "\n <div class="dataset-dbkey">\n <label class="prompt">"; - options = {hash:{},inverse:self.noop,fn:self.program(10, program10, data),data:data}; - if (stack1 = helpers.local) { stack1 = stack1.call(depth0, options); } - else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } - if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, options); } - if(stack1 || stack1 === 0) { buffer += stack1; } - buffer += "</label>\n <span class="value">\n "; - if (stack1 = helpers.metadata_dbkey) { stack1 = stack1.call(depth0, {hash:{},data:data}); } - else { stack1 = depth0.metadata_dbkey; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } - buffer += escapeExpression(stack1) - + "\n </span>\n </div>\n "; - return buffer; - } -function program10(depth0,data) { - - - return "database"; - } - -function program12(depth0,data) { - - var buffer = "", stack1; - buffer += "\n <div class="dataset-info">\n <span class="value">"; - if (stack1 = helpers.misc_info) { stack1 = stack1.call(depth0, {hash:{},data:data}); } - else { stack1 = depth0.misc_info; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } - buffer += escapeExpression(stack1) - + "</span>\n </div>\n "; - return buffer; - } - -function program14(depth0,data) { - - var buffer = "", stack1, options; - buffer += "\n " - + "\n <div class="tags-display">\n <label class="prompt">"; - options = {hash:{},inverse:self.noop,fn:self.program(15, program15, data),data:data}; - if (stack1 = helpers.local) { stack1 = stack1.call(depth0, options); } - else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } - if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, options); } - if(stack1 || stack1 === 0) { buffer += stack1; } - buffer += "</label>\n <div class="tags"></div>\n </div>\n\n " - + "\n <div class="annotation-display">\n <label class="prompt">"; - options = {hash:{},inverse:self.noop,fn:self.program(17, program17, data),data:data}; - if (stack1 = helpers.local) { stack1 = stack1.call(depth0, options); } - else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } - if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, options); } - if(stack1 || stack1 === 0) { buffer += stack1; } - buffer += "</label>\n <div id="dataset-"; - if (stack1 = helpers.id) { stack1 = stack1.call(depth0, {hash:{},data:data}); } - else { stack1 = depth0.id; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } - buffer += escapeExpression(stack1) - + "-annotation" class="annotation editable-text"\n title=""; - options = {hash:{},inverse:self.noop,fn:self.program(19, program19, data),data:data}; - if (stack1 = helpers.local) { stack1 = stack1.call(depth0, options); } - else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } - if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, options); } - if(stack1 || stack1 === 0) { buffer += stack1; } - buffer += ""></div>\n </div>\n\n <div class="dataset-display-applications">\n "; - stack1 = helpers.each.call(depth0, depth0.display_apps, {hash:{},inverse:self.noop,fn:self.program(21, program21, data),data:data}); - if(stack1 || stack1 === 0) { buffer += stack1; } - buffer += "\n\n "; - stack1 = helpers.each.call(depth0, depth0.display_types, {hash:{},inverse:self.noop,fn:self.program(21, program21, data),data:data}); - if(stack1 || stack1 === 0) { buffer += stack1; } - buffer += "\n </div>\n\n <div class="dataset-peek">\n "; - stack1 = helpers['if'].call(depth0, depth0.peek, {hash:{},inverse:self.noop,fn:self.program(25, program25, data),data:data}); - if(stack1 || stack1 === 0) { buffer += stack1; } - buffer += "\n </div>\n\n "; - return buffer; - } -function program15(depth0,data) { - - - return "Tags"; - } - -function program17(depth0,data) { - - - return "Annotation"; - } - -function program19(depth0,data) { - - - return "Edit dataset annotation"; - } - -function program21(depth0,data) { - - var buffer = "", stack1; - buffer += "\n <div class="display-application">\n <span class="display-application-location">"; - if (stack1 = helpers.label) { stack1 = stack1.call(depth0, {hash:{},data:data}); } - else { stack1 = depth0.label; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } - buffer += escapeExpression(stack1) - + "</span>\n <span class="display-application-links">\n "; - stack1 = helpers.each.call(depth0, depth0.links, {hash:{},inverse:self.noop,fn:self.program(22, program22, data),data:data}); - if(stack1 || stack1 === 0) { buffer += stack1; } - buffer += "\n </span>\n </div>\n "; - return buffer; - } -function program22(depth0,data) { - - var buffer = "", stack1, options; - buffer += "\n <a target=""; - if (stack1 = helpers.target) { stack1 = stack1.call(depth0, {hash:{},data:data}); } - else { stack1 = depth0.target; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } - buffer += escapeExpression(stack1) - + "" href=""; - if (stack1 = helpers.href) { stack1 = stack1.call(depth0, {hash:{},data:data}); } - else { stack1 = depth0.href; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } - buffer += escapeExpression(stack1) - + "">"; - options = {hash:{},inverse:self.noop,fn:self.program(23, program23, data),data:data}; - if (stack1 = helpers.local) { stack1 = stack1.call(depth0, options); } - else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } - if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, options); } - if(stack1 || stack1 === 0) { buffer += stack1; } - buffer += "</a>\n "; - return buffer; - } -function program23(depth0,data) { - - var stack1; - if (stack1 = helpers.text) { stack1 = stack1.call(depth0, {hash:{},data:data}); } - else { stack1 = depth0.text; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } - return escapeExpression(stack1); - } - -function program25(depth0,data) { - - var buffer = "", stack1; - buffer += "\n <pre class="peek">"; - if (stack1 = helpers.peek) { stack1 = stack1.call(depth0, {hash:{},data:data}); } - else { stack1 = depth0.peek; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } - if(stack1 || stack1 === 0) { buffer += stack1; } - buffer += "</pre>\n "; - return buffer; - } - - buffer += "<div class="dataset-body">\n "; - stack1 = helpers['if'].call(depth0, depth0.body, {hash:{},inverse:self.program(3, program3, data),fn:self.program(1, program1, data),data:data}); - if(stack1 || stack1 === 0) { buffer += stack1; } - buffer += "\n</div>"; - return buffer; - }); -})();(function() { - var template = Handlebars.template, templates = Handlebars.templates = Handlebars.templates || {}; -templates['template-hda-skeleton'] = template(function (Handlebars,depth0,helpers,partials,data) { - this.compilerInfo = [4,'>= 1.0.0']; -helpers = this.merge(helpers, Handlebars.helpers); data = data || {}; - var buffer = "", stack1, functionType="function", escapeExpression=this.escapeExpression, self=this, blockHelperMissing=helpers.blockHelperMissing; - -function program1(depth0,data) { - - var buffer = "", stack1, options; - buffer += "\n <div class="errormessagesmall">\n "; - options = {hash:{},inverse:self.noop,fn:self.program(2, program2, data),data:data}; - if (stack1 = helpers.local) { stack1 = stack1.call(depth0, options); } - else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } - if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, options); } - if(stack1 || stack1 === 0) { buffer += stack1; } - buffer += ":\n "; - options = {hash:{},inverse:self.noop,fn:self.program(4, program4, data),data:data}; - if (stack1 = helpers.local) { stack1 = stack1.call(depth0, options); } - else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } - if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, options); } - if(stack1 || stack1 === 0) { buffer += stack1; } - buffer += "\n </div>\n "; - return buffer; - } -function program2(depth0,data) { - - - return "There was an error getting the data for this dataset"; - } - -function program4(depth0,data) { - - var stack1; - if (stack1 = helpers.error) { stack1 = stack1.call(depth0, {hash:{},data:data}); } - else { stack1 = depth0.error; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } - return escapeExpression(stack1); - } - -function program6(depth0,data) { - - var buffer = "", stack1; - buffer += "\n "; - stack1 = helpers['if'].call(depth0, depth0.purged, {hash:{},inverse:self.program(10, program10, data),fn:self.program(7, program7, data),data:data}); - if(stack1 || stack1 === 0) { buffer += stack1; } - buffer += "\n "; - return buffer; - } -function program7(depth0,data) { - - var buffer = "", stack1, options; - buffer += "\n <div class="warningmessagesmall"><strong>\n "; - options = {hash:{},inverse:self.noop,fn:self.program(8, program8, data),data:data}; - if (stack1 = helpers.local) { stack1 = stack1.call(depth0, options); } - else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } - if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, options); } - if(stack1 || stack1 === 0) { buffer += stack1; } - buffer += "\n </strong></div>\n\n "; - return buffer; - } -function program8(depth0,data) { - - - return "This dataset has been deleted and removed from disk."; - } - -function program10(depth0,data) { - - var buffer = "", stack1, options; - buffer += "\n <div class="warningmessagesmall"><strong>\n "; - options = {hash:{},inverse:self.noop,fn:self.program(11, program11, data),data:data}; - if (stack1 = helpers.local) { stack1 = stack1.call(depth0, options); } - else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } - if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, options); } - if(stack1 || stack1 === 0) { buffer += stack1; } - buffer += "\n " - + "\n " - + "\n Click <a href="javascript:void(0);" class="dataset-undelete">here</a> to undelete it\n or <a href="javascript:void(0);" class="dataset-purge">here</a> to immediately remove it from disk\n </strong></div>\n "; - return buffer; - } -function program11(depth0,data) { - - - return "This dataset has been deleted."; - } - -function program13(depth0,data) { - - var buffer = "", stack1, options; - buffer += "\n <div class="warningmessagesmall"><strong>\n "; - options = {hash:{},inverse:self.noop,fn:self.program(14, program14, data),data:data}; - if (stack1 = helpers.local) { stack1 = stack1.call(depth0, options); } - else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } - if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, options); } - if(stack1 || stack1 === 0) { buffer += stack1; } - buffer += "\n " - + "\n Click <a href="javascript:void(0);" class="dataset-unhide">here</a> to unhide it\n </strong></div>\n "; - return buffer; - } -function program14(depth0,data) { - - - return "This dataset has been hidden."; - } - - buffer += "<div class="dataset hda">\n <div class="dataset-warnings">\n "; - stack1 = helpers['if'].call(depth0, depth0.error, {hash:{},inverse:self.noop,fn:self.program(1, program1, data),data:data}); - if(stack1 || stack1 === 0) { buffer += stack1; } - buffer += "\n\n "; - stack1 = helpers['if'].call(depth0, depth0.deleted, {hash:{},inverse:self.noop,fn:self.program(6, program6, data),data:data}); - if(stack1 || stack1 === 0) { buffer += stack1; } - buffer += "\n\n "; - stack1 = helpers.unless.call(depth0, depth0.visible, {hash:{},inverse:self.noop,fn:self.program(13, program13, data),data:data}); - if(stack1 || stack1 === 0) { buffer += stack1; } - buffer += "\n </div>\n\n <div class="dataset-primary-actions"></div>\n <div class="dataset-title-bar clear">\n <span class="dataset-state-icon state-icon"></span>\n <div class="dataset-title">\n <span class="hda-hid">"; - if (stack1 = helpers.hid) { stack1 = stack1.call(depth0, {hash:{},data:data}); } - else { stack1 = depth0.hid; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } - buffer += escapeExpression(stack1) - + "</span>\n <span class="dataset-name">"; - if (stack1 = helpers.name) { stack1 = stack1.call(depth0, {hash:{},data:data}); } - else { stack1 = depth0.name; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } - buffer += escapeExpression(stack1) - + "</span>\n </div>\n </div>\n\n <div class="dataset-body"></div>\n</div>"; - return buffer; - }); -})();(function() { - var template = Handlebars.template, templates = Handlebars.templates = Handlebars.templates || {}; templates['template-hda-skeleton'] = template(function (Handlebars,depth0,helpers,partials,data) { this.compilerInfo = [4,'>= 1.0.0']; helpers = this.merge(helpers, Handlebars.helpers); data = data || {}; @@ -874,26 +498,6 @@ function program15(depth0,data) {

- return "Annotation"; - } - -function program17(depth0,data) { - - - return "Click to edit annotation"; - } - -function program19(depth0,data) { - - var stack1; - if (stack1 = helpers.annotation) { stack1 = stack1.call(depth0, {hash:{},data:data}); } - else { stack1 = depth0.annotation; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } - return escapeExpression(stack1); - } - -function program21(depth0,data) { - - return "Your history is empty. Click 'Get Data' on the left pane to start"; }

@@ -921,231 +525,14 @@ else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, options); } if(stack1 || stack1 === 0) { buffer += stack1; } - buffer += ".\n </div>\n \n " - + "\n " - + "\n <div class="tags-display"></div>\n\n " - + "\n <div class="annotation-display">\n <label class="prompt">"; - options = {hash:{},inverse:self.noop,fn:self.program(15, program15, data),data:data}; - if (stack1 = helpers.local) { stack1 = stack1.call(depth0, options); } - else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } - if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, options); } - if(stack1 || stack1 === 0) { buffer += stack1; } - buffer += "</label>\n <div class="annotation" title=""; - options = {hash:{},inverse:self.noop,fn:self.program(17, program17, data),data:data}; - if (stack1 = helpers.local) { stack1 = stack1.call(depth0, options); } - else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } - if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, options); } - if(stack1 || stack1 === 0) { buffer += stack1; } - buffer += ""\n " - + "\n >"; - stack1 = helpers['if'].call(depth0, depth0.annotation, {hash:{},inverse:self.noop,fn:self.program(19, program19, data),data:data}); - if(stack1 || stack1 === 0) { buffer += stack1; } - buffer += "</div>\n </div>\n\n </div>" + buffer += ".\n </div>\n \n <div class="tags-display"></div>\n <div class="annotation-display"></div>\n\n </div>" + "\n\n " + "\n <div class="datasets-list"></div>\n\n <div class="empty-history-message infomessagesmall">\n "; - options = {hash:{},inverse:self.noop,fn:self.program(21, program21, data),data:data}; - if (stack1 = helpers.local) { stack1 = stack1.call(depth0, options); } - else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } - if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, options); } - if(stack1 || stack1 === 0) { buffer += stack1; } - buffer += "\n </div>"; - return buffer; - }); -})();(function() { - var template = Handlebars.template, templates = Handlebars.templates = Handlebars.templates || {}; -templates['template-history-historyPanel'] = template(function (Handlebars,depth0,helpers,partials,data) { - this.compilerInfo = [4,'>= 1.0.0']; -helpers = this.merge(helpers, Handlebars.helpers); data = data || {}; - var buffer = "", stack1, options, self=this, functionType="function", blockHelperMissing=helpers.blockHelperMissing, escapeExpression=this.escapeExpression; - -function program1(depth0,data) { - - var buffer = "", stack1, options; - buffer += "\n <div class="history-name" title=""; - options = {hash:{},inverse:self.noop,fn:self.program(2, program2, data),data:data}; - if (stack1 = helpers.local) { stack1 = stack1.call(depth0, options); } - else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } - if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, options); } - if(stack1 || stack1 === 0) { buffer += stack1; } - buffer += "">\n "; - if (stack1 = helpers.name) { stack1 = stack1.call(depth0, {hash:{},data:data}); } - else { stack1 = depth0.name; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } - buffer += escapeExpression(stack1) - + "\n </div>\n "; - return buffer; - } -function program2(depth0,data) { - - - return "Click to rename history"; - } - -function program4(depth0,data) { - - var buffer = "", stack1; - buffer += "\n <div class="history-size">"; - if (stack1 = helpers.nice_size) { stack1 = stack1.call(depth0, {hash:{},data:data}); } - else { stack1 = depth0.nice_size; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } - buffer += escapeExpression(stack1) - + "</div>\n "; - return buffer; - } - -function program6(depth0,data) { - - var buffer = "", stack1, options; - buffer += "\n <div class="warningmessagesmall"><strong>\n "; - options = {hash:{},inverse:self.noop,fn:self.program(7, program7, data),data:data}; - if (stack1 = helpers.local) { stack1 = stack1.call(depth0, options); } - else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } - if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, options); } - if(stack1 || stack1 === 0) { buffer += stack1; } - buffer += "\n </strong></div>\n "; - return buffer; - } -function program7(depth0,data) { - - - return "You are currently viewing a deleted history!"; - } - -function program9(depth0,data) { - - var buffer = "", stack1; - buffer += "\n " - + "\n <div class=""; - if (stack1 = helpers.status) { stack1 = stack1.call(depth0, {hash:{},data:data}); } - else { stack1 = depth0.status; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } - buffer += escapeExpression(stack1) - + "message">"; - if (stack1 = helpers.message) { stack1 = stack1.call(depth0, {hash:{},data:data}); } - else { stack1 = depth0.message; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } - buffer += escapeExpression(stack1) - + "</div>\n "; - return buffer; - } - -function program11(depth0,data) { - - - return "You are over your disk quota"; - } - -function program13(depth0,data) { - - - return "Tool execution is on hold until your disk usage drops below your allocated quota"; - } - -function program15(depth0,data) { - - - return "Tags"; - } - -function program17(depth0,data) { - - - return "Annotation"; - } - -function program19(depth0,data) { - - - return "Click to edit annotation"; - } - -function program21(depth0,data) { - - var buffer = "", stack1; - buffer += "\n "; - if (stack1 = helpers.annotation) { stack1 = stack1.call(depth0, {hash:{},data:data}); } - else { stack1 = depth0.annotation; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } - buffer += escapeExpression(stack1) - + "\n "; - return buffer; - } - -function program23(depth0,data) { - - var buffer = "", stack1, options; - buffer += "\n <em>"; - options = {hash:{},inverse:self.noop,fn:self.program(24, program24, data),data:data}; - if (stack1 = helpers.local) { stack1 = stack1.call(depth0, options); } - else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } - if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, options); } - if(stack1 || stack1 === 0) { buffer += stack1; } - buffer += "</em>\n "; - return buffer; - } -function program24(depth0,data) { - - - return "Describe or add notes to history"; - } - -function program26(depth0,data) { - - - return "Your history is empty. Click 'Get Data' on the left pane to start"; - } - - buffer += "<div class="history-controls">\n\n <div class="history-title">\n "; - stack1 = helpers['if'].call(depth0, depth0.name, {hash:{},inverse:self.noop,fn:self.program(1, program1, data),data:data}); - if(stack1 || stack1 === 0) { buffer += stack1; } - buffer += "\n </div>\n\n <div class="history-subtitle clear">\n "; - stack1 = helpers['if'].call(depth0, depth0.nice_size, {hash:{},inverse:self.noop,fn:self.program(4, program4, data),data:data}); - if(stack1 || stack1 === 0) { buffer += stack1; } - buffer += "\n\n <div class="history-secondary-actions">\n </div>\n </div>\n\n "; - stack1 = helpers['if'].call(depth0, depth0.deleted, {hash:{},inverse:self.noop,fn:self.program(6, program6, data),data:data}); - if(stack1 || stack1 === 0) { buffer += stack1; } - buffer += "\n\n <div class="message-container">\n "; - stack1 = helpers['if'].call(depth0, depth0.message, {hash:{},inverse:self.noop,fn:self.program(9, program9, data),data:data}); - if(stack1 || stack1 === 0) { buffer += stack1; } - buffer += "\n </div>\n\n <div class="quota-message errormessage">\n "; - options = {hash:{},inverse:self.noop,fn:self.program(11, program11, data),data:data}; - if (stack1 = helpers.local) { stack1 = stack1.call(depth0, options); } - else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } - if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, options); } - if(stack1 || stack1 === 0) { buffer += stack1; } - buffer += ".\n "; - options = {hash:{},inverse:self.noop,fn:self.program(13, program13, data),data:data}; - if (stack1 = helpers.local) { stack1 = stack1.call(depth0, options); } - else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } - if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, options); } - if(stack1 || stack1 === 0) { buffer += stack1; } - buffer += ".\n </div>\n \n " - + "\n " - + "\n <div class="tags-display">\n <label class="prompt">"; options = {hash:{},inverse:self.noop,fn:self.program(15, program15, data),data:data}; if (stack1 = helpers.local) { stack1 = stack1.call(depth0, options); } else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, options); } if(stack1 || stack1 === 0) { buffer += stack1; } - buffer += "</label>\n <div class="tags"></div>\n </div>\n\n " - + "\n <div class="annotation-display">\n <label class="prompt">"; - options = {hash:{},inverse:self.noop,fn:self.program(17, program17, data),data:data}; - if (stack1 = helpers.local) { stack1 = stack1.call(depth0, options); } - else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } - if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, options); } - if(stack1 || stack1 === 0) { buffer += stack1; } - buffer += "</label>\n <div class="annotation" title=""; - options = {hash:{},inverse:self.noop,fn:self.program(19, program19, data),data:data}; - if (stack1 = helpers.local) { stack1 = stack1.call(depth0, options); } - else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } - if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, options); } - if(stack1 || stack1 === 0) { buffer += stack1; } - buffer += "">\n "; - stack1 = helpers['if'].call(depth0, depth0.annotation, {hash:{},inverse:self.program(23, program23, data),fn:self.program(21, program21, data),data:data}); - if(stack1 || stack1 === 0) { buffer += stack1; } - buffer += "\n </div>\n </div>\n\n </div>" - + "\n\n " - + "\n <div class="datasets-list"></div>\n\n <div class="empty-history-message infomessagesmall">\n "; - options = {hash:{},inverse:self.noop,fn:self.program(26, program26, data),data:data}; - if (stack1 = helpers.local) { stack1 = stack1.call(depth0, options); } - else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } - if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, options); } - if(stack1 || stack1 === 0) { buffer += stack1; } buffer += "\n </div>"; return buffer; });

diff -r 9493825685ee557c4a33b37614b22c4c21463219 -r 59970693121175aacf9d9ca75f012104d7e5db08 static/scripts/templates/compiled/template-hda-body.js --- a/static/scripts/templates/compiled/template-hda-body.js +++ b/static/scripts/templates/compiled/template-hda-body.js @@ -106,63 +106,33 @@

function program14(depth0,data) {

- var buffer = "", stack1, options; - buffer += "\n " - + "\n <div class="tags-display"></div>\n\n " - + "\n <div class="annotation-display">\n <label class="prompt">"; - options = {hash:{},inverse:self.noop,fn:self.program(15, program15, data),data:data}; - if (stack1 = helpers.local) { stack1 = stack1.call(depth0, options); } - else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } - if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, options); } - if(stack1 || stack1 === 0) { buffer += stack1; } - buffer += "</label>\n <div id="dataset-"; - if (stack1 = helpers.id) { stack1 = stack1.call(depth0, {hash:{},data:data}); } - else { stack1 = depth0.id; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } - buffer += escapeExpression(stack1) - + "-annotation" class="annotation editable-text"\n title=""; - options = {hash:{},inverse:self.noop,fn:self.program(17, program17, data),data:data}; - if (stack1 = helpers.local) { stack1 = stack1.call(depth0, options); } - else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } - if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, options); } - if(stack1 || stack1 === 0) { buffer += stack1; } - buffer += ""></div>\n </div>\n\n <div class="dataset-display-applications">\n "; - stack1 = helpers.each.call(depth0, depth0.display_apps, {hash:{},inverse:self.noop,fn:self.program(19, program19, data),data:data}); + var buffer = "", stack1; + buffer += "\n <div class="tags-display"></div>\n <div class="annotation-display"></div>\n\n <div class="dataset-display-applications">\n "; + stack1 = helpers.each.call(depth0, depth0.display_apps, {hash:{},inverse:self.noop,fn:self.program(15, program15, data),data:data}); if(stack1 || stack1 === 0) { buffer += stack1; } buffer += "\n\n "; - stack1 = helpers.each.call(depth0, depth0.display_types, {hash:{},inverse:self.noop,fn:self.program(19, program19, data),data:data}); + stack1 = helpers.each.call(depth0, depth0.display_types, {hash:{},inverse:self.noop,fn:self.program(15, program15, data),data:data}); if(stack1 || stack1 === 0) { buffer += stack1; } buffer += "\n </div>\n\n <div class="dataset-peek">\n "; - stack1 = helpers['if'].call(depth0, depth0.peek, {hash:{},inverse:self.noop,fn:self.program(23, program23, data),data:data}); + stack1 = helpers['if'].call(depth0, depth0.peek, {hash:{},inverse:self.noop,fn:self.program(19, program19, data),data:data}); if(stack1 || stack1 === 0) { buffer += stack1; } buffer += "\n </div>\n\n "; return buffer; } function program15(depth0,data) {

- - return "Annotation"; - } - -function program17(depth0,data) { - - - return "Edit dataset annotation"; - } - -function program19(depth0,data) { - var buffer = "", stack1; buffer += "\n <div class="display-application">\n <span class="display-application-location">"; if (stack1 = helpers.label) { stack1 = stack1.call(depth0, {hash:{},data:data}); } else { stack1 = depth0.label; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } buffer += escapeExpression(stack1) + "</span>\n <span class="display-application-links">\n "; - stack1 = helpers.each.call(depth0, depth0.links, {hash:{},inverse:self.noop,fn:self.program(20, program20, data),data:data}); + stack1 = helpers.each.call(depth0, depth0.links, {hash:{},inverse:self.noop,fn:self.program(16, program16, data),data:data}); if(stack1 || stack1 === 0) { buffer += stack1; } buffer += "\n </span>\n </div>\n "; return buffer; } -function program20(depth0,data) { +function program16(depth0,data) {

var buffer = "", stack1, options; buffer += "\n <a target=""; @@ -174,7 +144,7 @@ else { stack1 = depth0.href; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } buffer += escapeExpression(stack1) + "">"; - options = {hash:{},inverse:self.noop,fn:self.program(21, program21, data),data:data}; + options = {hash:{},inverse:self.noop,fn:self.program(17, program17, data),data:data}; if (stack1 = helpers.local) { stack1 = stack1.call(depth0, options); } else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, options); } @@ -182,7 +152,7 @@ buffer += "</a>\n "; return buffer; } -function program21(depth0,data) { +function program17(depth0,data) {

var stack1; if (stack1 = helpers.text) { stack1 = stack1.call(depth0, {hash:{},data:data}); } @@ -190,7 +160,7 @@ return escapeExpression(stack1); }

-function program23(depth0,data) { +function program19(depth0,data) {

var buffer = "", stack1; buffer += "\n <pre class="peek">";

diff -r 9493825685ee557c4a33b37614b22c4c21463219 -r 59970693121175aacf9d9ca75f012104d7e5db08 static/scripts/templates/compiled/template-history-historyPanel.js --- a/static/scripts/templates/compiled/template-history-historyPanel.js +++ b/static/scripts/templates/compiled/template-history-historyPanel.js @@ -87,26 +87,6 @@ function program15(depth0,data) {

- return "Annotation"; - } - -function program17(depth0,data) { - - - return "Click to edit annotation"; - } - -function program19(depth0,data) { - - var stack1; - if (stack1 = helpers.annotation) { stack1 = stack1.call(depth0, {hash:{},data:data}); } - else { stack1 = depth0.annotation; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } - return escapeExpression(stack1); - } - -function program21(depth0,data) { - - return "Your history is empty. Click 'Get Data' on the left pane to start"; }

@@ -134,29 +114,10 @@ else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, options); } if(stack1 || stack1 === 0) { buffer += stack1; } - buffer += ".\n </div>\n \n " - + "\n " - + "\n <div class="tags-display"></div>\n\n " - + "\n <div class="annotation-display">\n <label class="prompt">"; - options = {hash:{},inverse:self.noop,fn:self.program(15, program15, data),data:data}; - if (stack1 = helpers.local) { stack1 = stack1.call(depth0, options); } - else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } - if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, options); } - if(stack1 || stack1 === 0) { buffer += stack1; } - buffer += "</label>\n <div class="annotation" title=""; - options = {hash:{},inverse:self.noop,fn:self.program(17, program17, data),data:data}; - if (stack1 = helpers.local) { stack1 = stack1.call(depth0, options); } - else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } - if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, options); } - if(stack1 || stack1 === 0) { buffer += stack1; } - buffer += ""\n " - + "\n >"; - stack1 = helpers['if'].call(depth0, depth0.annotation, {hash:{},inverse:self.noop,fn:self.program(19, program19, data),data:data}); - if(stack1 || stack1 === 0) { buffer += stack1; } - buffer += "</div>\n </div>\n\n </div>" + buffer += ".\n </div>\n \n <div class="tags-display"></div>\n <div class="annotation-display"></div>\n\n </div>" + "\n\n " + "\n <div class="datasets-list"></div>\n\n <div class="empty-history-message infomessagesmall">\n "; - options = {hash:{},inverse:self.noop,fn:self.program(21, program21, data),data:data}; + options = {hash:{},inverse:self.noop,fn:self.program(15, program15, data),data:data}; if (stack1 = helpers.local) { stack1 = stack1.call(depth0, options); } else { stack1 = depth0.local; stack1 = typeof stack1 === functionType ? stack1.apply(depth0) : stack1; } if (!helpers.local) { stack1 = blockHelperMissing.call(depth0, stack1, options); }

diff -r 9493825685ee557c4a33b37614b22c4c21463219 -r 59970693121175aacf9d9ca75f012104d7e5db08 static/scripts/templates/hda-templates.html --- a/static/scripts/templates/hda-templates.html +++ b/static/scripts/templates/hda-templates.html @@ -97,15 +97,8 @@ </div>

{{#unless deleted }} - {{! TODO: move to mvc/tag.js }} <div class="tags-display"></div> - - {{! TODO: move to mvc/annotations.js }} - <div class="annotation-display"> - <label class="prompt">{{#local}}Annotation{{/local}}</label> - <div id="dataset-{{ id }}-annotation" class="annotation editable-text" - title="{{#local}}Edit dataset annotation{{/local}}"></div> - </div> + <div class="annotation-display"></div><div class="dataset-display-applications"> {{#each display_apps}}

diff -r 9493825685ee557c4a33b37614b22c4c21463219 -r 59970693121175aacf9d9ca75f012104d7e5db08 static/scripts/templates/history-templates.html --- a/static/scripts/templates/history-templates.html +++ b/static/scripts/templates/history-templates.html @@ -38,17 +38,8 @@ {{#local}}Tool execution is on hold until your disk usage drops below your allocated quota{{/local}}. </div>

- {{! tags and annotations }} - {{! TODO: move to mvc/tag.js }} <div class="tags-display"></div> - - {{! TODO: move to mvc/annotations.js }} - <div class="annotation-display"> - <label class="prompt">{{#local}}Annotation{{/local}}</label> - <div class="annotation" title="{{#local}}Click to edit annotation{{/local}}" - {{! need to elimate the whitespace in this }} - >{{#if annotation}}{{annotation}}{{/if}}</div> - </div> + <div class="annotation-display"></div></div>{{! end history-controls }}

diff -r 9493825685ee557c4a33b37614b22c4c21463219 -r 59970693121175aacf9d9ca75f012104d7e5db08 static/style/blue/base.css --- a/static/style/blue/base.css +++ b/static/style/blue/base.css @@ -1517,7 +1517,7 @@ .history-panel .message-container [class$=message]{margin:0px} .history-panel .history-controls{margin:10px;padding:0px}.history-panel .history-controls .history-title{margin-bottom:4px} .history-panel .history-controls .history-name{word-wrap:break-word;font-weight:bold} -.history-panel .history-controls .history-title input{font-weight:bold;margin:-2px 0 -2px -4px} +.history-panel .history-controls .history-title input{font-weight:bold;width:100%;margin:-2px 0 -2px -4px} .history-panel .history-controls .history-subtitle{margin-bottom:8px} .history-panel .history-controls .history-size{float:left} .history-panel .history-controls .history-secondary-actions{float:right}.history-panel .history-controls .history-secondary-actions .icon-btn{margin-left:2px} @@ -1526,7 +1526,9 @@ .history-panel .history-controls .tags-display label:after,.history-panel .history-controls .annotation-display label:after{content:':'} .history-panel .history-controls .tags-display .select2-container{min-width:0px}.history-panel .history-controls .tags-display .select2-container .select2-choices{border-radius:3px} .history-panel .history-controls .tags-display input{border-radius:3px} -.history-panel .history-controls .annotation-display .annotation{border-radius:3px;border:1px solid fadout(#999, 50%);padding:4px;white-space:pre-line} +.history-panel .history-controls .annotation-display .annotation{border-radius:3px;border:1px solid rgba(153,153,153,0.5);padding:4px;white-space:pre-line} +.history-panel .history-controls .annotation-display .annotation:empty{height:20px} +.history-panel .history-controls .annotation-display .annotation:empty:after{position:relative;top:-4px;font-size:10px;font-style:italic;color:grey;content:'Click here to edit annotation'} .history-panel .history-controls .annotation-display textarea{margin:0px 0px 2px 0px;display:block;border-radius:3px;width:100%} .history-panel .dataset{border-width:1px 0px 0px 0px} .history-panel .dataset:last-child{border-width:1px 0px 1px 0px} @@ -1536,6 +1538,7 @@ .dataset .info-section{border-radius:3px;border:1px solid rgba(153,153,153,0.30000000000000004);padding:4px} .dataset .dataset-padding{padding:6px 10px 6px 8px} .dataset [class$=messagesmall]{margin:6px 10px 2px 8px;font-size:90%} +.dataset .help-text{font-weight:normal;font-style:italic;font-size:90%;color:#555} .dataset .dataset-title-bar{cursor:pointer;padding:6px 10px 6px 8px} .dataset .dataset-title-bar .dataset-title{display:inline;font-weight:bold;text-decoration:underline;word-break:normal;line-height:16px} .dataset .dataset-primary-actions{float:right;margin:6px 10px 0}.dataset .dataset-primary-actions .icon-btn{margin-left:2px} @@ -1545,15 +1548,18 @@ .dataset .dataset-body .prompt:after{content:':'} .dataset .dataset-body .dataset-summary{margin-bottom:8px}.dataset .dataset-body .dataset-summary .dataset-blurb{margin-bottom:2px} .dataset .dataset-body .dataset-summary .dataset-datatype,.dataset .dataset-body .dataset-summary .dataset-dbkey{display:inline}.dataset .dataset-body .dataset-summary .dataset-datatype .value,.dataset .dataset-body .dataset-summary .dataset-dbkey .value{font-weight:bold} -.dataset .dataset-body .dataset-summary .dataset-datatype .value:after{content:','} +.dataset .dataset-body .dataset-summary .dataset-datatype .value:after{content:',';font-weight:normal;font-style:italic;font-size:90%;color:#555} .dataset .dataset-body .dataset-summary .dataset-dbkey:after{content:' ';display:block;margin-bottom:8px} .dataset .dataset-body .dataset-summary .dataset-info{border-radius:3px;border:1px solid rgba(153,153,153,0.30000000000000004);padding:4px}.dataset .dataset-body .dataset-summary .dataset-info .value{white-space:pre-line} +.dataset .dataset-body .dataset-summary .job-error-text{border-radius:3px;border:1px solid rgba(153,153,153,0.30000000000000004);padding:4px;overflow:auto;white-space:pre} .dataset .dataset-body .dataset-actions .left{float:left}.dataset .dataset-body .dataset-actions .left .icon-btn{margin-right:2px} .dataset .dataset-body .dataset-actions .left .icon-btn-group{margin-right:2px}.dataset .dataset-body .dataset-actions .left .icon-btn-group .icon-btn{margin-right:0} .dataset .dataset-body .dataset-actions .left:not(:empty){margin-bottom:8px} .dataset .dataset-body .dataset-actions .right{float:right}.dataset .dataset-body .dataset-actions .right .icon-btn{margin-left:2px} .dataset .dataset-body .tags-display{display:none;margin-bottom:8px}.dataset .dataset-body .tags-display .select2-container{min-width:0px}.dataset .dataset-body .tags-display .select2-container .select2-choices{border-radius:3px} .dataset .dataset-body .annotation-display{display:none;margin-bottom:8px}.dataset .dataset-body .annotation-display .annotation{border-radius:3px;border:1px solid rgba(153,153,153,0.30000000000000004);padding:4px;white-space:pre-line} +.dataset .dataset-body .annotation-display .annotation:empty{height:20px} +.dataset .dataset-body .annotation-display .annotation:empty:after{position:relative;top:-4px;font-size:10px;font-style:italic;color:grey;content:'Click here to edit annotation'} .dataset .dataset-body .annotation-display textarea{margin:0px 0px 2px 0px;display:block;border-radius:3px;width:100%} .dataset .dataset-body .dataset-display-applications .display-application:last-child{margin-bottom:8px} .dataset .dataset-body .dataset-peek{margin-bottom:8px}.dataset .dataset-body .dataset-peek pre.peek{width:100%;margin:0px;border-radius:3px;background:white;color:black;font-size:10px;overflow:auto}.dataset .dataset-body .dataset-peek pre.peek th{color:white;background:#5f6990}

This diff is so big that we needed to truncate the remainder.

Repository URL: https://bitbucket.org/galaxy/galaxy-central/

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