Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 825d7f6fa74384d195739fe7ac0bf4e1d5b9c1cf https://github.com/galaxyproject/galaxy/commit/825d7f6fa74384d195739fe7ac0bf... Author: mvdbeek m.vandenbeek@gmail.com Date: 2018-05-31 (Thu, 31 May 2018)
Changed paths: M lib/galaxy/tools/parser/output_actions.py
Log Message: ----------- Allow from_param to reference a child collection
This is necessary when mapping over a collection over an input that is referenced in the output section, like so: ``` ... <when value="paired_collection"> <action type="format"> <option type="from_param" name="library.input_1" param_attribute="reverse.ext" /> </action> </when> ... ```
Commit: 50c98701b7682d8878cbc2fa1acdc3f28abdad0e https://github.com/galaxyproject/galaxy/commit/50c98701b7682d8878cbc2fa1acdc... Author: mvdbeek m.vandenbeek@gmail.com Date: 2018-05-31 (Thu, 31 May 2018)
Changed paths: M lib/galaxy/dataset_collections/subcollections.py
Log Message: ----------- Do not adapt target collection to child collection type
Otherwise mapping over list:list:pair to a pair input breaks at https://github.com/galaxyproject/galaxy/blob/21b44bf348ae10d170ab96a3b6f30bf....
This and the previous commit should fix https://github.com/galaxyproject/tools-iuc/issues/1563.
Commit: 99889af1d52a263737dca3c7461baa5ce4fe8ad7 https://github.com/galaxyproject/galaxy/commit/99889af1d52a263737dca3c7461ba... Author: mvdbeek m.vandenbeek@gmail.com Date: 2018-05-31 (Thu, 31 May 2018)
Changed paths: M test/api/test_tools.py A test/functional/tools/output_action_change_format_paired.xml M test/functional/tools/samples_tool_conf.xml
Log Message: ----------- Test case for mapping over inputs with output ftype determined via input extension
Commit: f690386f0b88fa4f5f94b83e4dea8c97f60747fd https://github.com/galaxyproject/galaxy/commit/f690386f0b88fa4f5f94b83e4dea8... Author: mvdbeek m.vandenbeek@gmail.com Date: 2018-06-01 (Fri, 01 Jun 2018)
Changed paths: M lib/galaxy/tools/parser/output_actions.py
Log Message: ----------- Drop unused COLLECTION_ATTRIBUTES
Commit: 2f6c184e6f5c614e36f8100648b1a5f5a8f6ac94 https://github.com/galaxyproject/galaxy/commit/2f6c184e6f5c614e36f8100648b1a... Author: John Chilton jmchilton@gmail.com Date: 2018-06-04 (Mon, 04 Jun 2018)
Changed paths: M lib/galaxy/dataset_collections/subcollections.py M lib/galaxy/tools/parser/output_actions.py M test/api/test_tools.py A test/functional/tools/output_action_change_format_paired.xml M test/functional/tools/samples_tool_conf.xml
Log Message: ----------- Merge pull request #6253 from mvdbeek/mapping_over_from_param_fixes
Mapping over from_param fixes
Compare: https://github.com/galaxyproject/galaxy/compare/9cf66df7a7af...2f6c184e6f5c **NOTE:** This service been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/
Functionality will be removed from GitHub.com on January 31st, 2019.