1 new commit in galaxy-central:
https://bitbucket.org/galaxy/galaxy-central/commits/c7a07f350887/ Changeset: c7a07f350887 User: jgoecks Date: 2013-07-02 15:25:55 Summary: Make SAM_to_BAM tool write temporary files to job working directory rather than generic temp space. Affected #: 1 file
diff -r a600d1f3f9009f383d8f4667f48592450b9154cf -r c7a07f350887fe3b4e822ba6b26b63ac3ac14bdf tools/samtools/sam_to_bam.py --- a/tools/samtools/sam_to_bam.py +++ b/tools/samtools/sam_to_bam.py @@ -42,7 +42,7 @@ except: sys.stdout.write( 'Could not determine Samtools version\n' )
- tmp_dir = tempfile.mkdtemp() + tmp_dir = tempfile.mkdtemp( dir='.' ) if not options.ref_file or options.ref_file == 'None': # We're using locally cached reference sequences( e.g., /galaxy/data/equCab2/sam_index/equCab2.fa ). # The indexes for /galaxy/data/equCab2/sam_index/equCab2.fa will be contained in
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
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