1 new changeset in galaxy-central:
http://bitbucket.org/galaxy/galaxy-central/changeset/6cf34552c6f5/ changeset: r5091:6cf34552c6f5 user: rc date: 2011-02-18 20:46:16 summary: renamed 'samples' to 'sample_widgets' in __save_samples affected #: 1 file (63 bytes)
--- a/lib/galaxy/web/controllers/requests_common.py Fri Feb 18 14:34:14 2011 -0500 +++ b/lib/galaxy/web/controllers/requests_common.py Fri Feb 18 14:46:16 2011 -0500 @@ -1093,7 +1093,7 @@ request_widgets=request_widgets, displayable_sample_widgets=displayable_sample_widgets, sample_copy_select_field=sample_copy_select_field ) - def __save_samples( self, trans, cntrller, request, samples, saving_new_samples=False, **kwd ): + def __save_samples( self, trans, cntrller, request, sample_widgets, saving_new_samples=False, **kwd ): # Here we handle saving all new samples added by the user as well as saving # changes to any subset of the request's samples. A sample will not have an # associated SampleState until the request is submitted, at which time the @@ -1109,7 +1109,7 @@ else: redirect_action = 'edit_samples' # Check for duplicate sample names within the request - self.__validate_sample_names( trans, cntrller, request, samples, **kwd ) + self.__validate_sample_names( trans, cntrller, request, sample_widgets, **kwd ) if not saving_new_samples: library = None folder = None @@ -1138,8 +1138,8 @@ # TODO: make changes necessary to just send the samples... encoded_selected_sample_ids = self.__get_encoded_selected_sample_ids( trans, request, **kwd ) # Make sure all samples have a unique bar_code if the state is changing - for sample_index in range( len( samples ) ): - current_sample = samples[ sample_index ] + for sample_index in range( len( sample_widgets ) ): + current_sample = sample_widgets[ sample_index ] if current_sample is None: # We have a None value because the user did not select this sample # on which to perform the action. @@ -1163,15 +1163,15 @@ library_id = params.get( 'sample_operation_library_id', 'none' ) folder_id = params.get( 'sample_operation_folder_id', 'none' ) library, folder = self.__get_library_and_folder( trans, library_id, folder_id ) - for sample_index in range( len( samples ) ): - current_sample = samples[ sample_index ] + for sample_index in range( len( sample_widgets ) ): + current_sample = sample_widgets[ sample_index ] if current_sample is None: # We have a None value because the user did not select this sample # on which to perform the action. continue current_sample[ 'library' ] = library current_sample[ 'folder' ] = folder - self.__update_samples( trans, cntrller, request, samples, **kwd ) + self.__update_samples( trans, cntrller, request, sample_widgets, **kwd ) message = 'Changes made to the samples have been saved. ' else: # Saving a newly created sample. The sample will not have an associated SampleState @@ -1179,9 +1179,9 @@ # set to the first SampleState configured for the request's RequestType configured # by the admin ( i.e., the sample's SampleState would be set to request.type.states[0] ). new_samples = [] - for index in range( len( samples ) - len( request.samples ) ): + for index in range( len( sample_widgets ) - len( request.samples ) ): sample_index = len( request.samples ) - sample_widget = samples[ sample_index ] + sample_widget = sample_widgets[ sample_index ] form_values = trans.model.FormValues( request.type.sample_form, sample_widget[ 'field_values' ] ) trans.sa_session.add( form_values ) trans.sa_session.flush()
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
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