# HG changeset patch --
Bitbucket.org
# Project galaxy-dist
# URL
http://bitbucket.org/galaxy/galaxy-dist/overview
# User jeremy goecks <jeremy.goecks(a)emory.edu>
# Date 1275942526 14400
# Node ID f71716f286ee0c2e807c22dff2abd54815f14554
# Parent 37f4420ba3fcf9eb0fd097cf812ad91cc2824f99
Add GFF support to GOPS subtract tool and updated functional tests. Using the GFF-->BED
converter is lossy as GFF has more attributes/features than BED, so it's necessary to
directly support GFF. Basic approach used is to modify interval coordinates during reading
and writing while not changing the middle, computational steps; this approach can be used
to provide GFF support for any tool that uses bx-python to operate on intervals.
--- a/tools/new_operations/gops_subtract.py
+++ b/tools/new_operations/gops_subtract.py
@@ -8,6 +8,7 @@ usage: %prog bed_file_1 bed_file_2 out_f
-2, --cols2=N,N,N,N: Columns for start, end, strand in second file
-m, --mincols=N: Require this much overlap (default 1bp)
-p, --pieces: just print pieces of second set (after padding)
+ -G, --gff: inputs are GFF format, meaning start and end coordinates are 1-based,
closed interval
"""
from galaxy import eggs
import pkg_resources
@@ -19,6 +20,7 @@ from bx.intervals.io import *
from bx.intervals.operations.subtract import *
from bx.cookbook import doc_optparse
from galaxy.tools.util.galaxyops import *
+from galaxy.tools.util.gff_util import *
assert sys.version_info[:2] >= ( 2, 4 )
@@ -33,17 +35,24 @@ def main():
chr_col_2, start_col_2, end_col_2, strand_col_2 = parse_cols_arg( options.cols2 )
if options.mincols: mincols = int( options.mincols )
pieces = bool( options.pieces )
+ gff_format = bool( options.gff )
in_fname, in2_fname, out_fname = args
except:
doc_optparse.exception()
- g1 = NiceReaderWrapper( fileinput.FileInput( in_fname ),
+ # Set reader to handle either GFF or default format.
+ if gff_format:
+ reader_wrapper = GFFReaderWrapper
+ else:
+ reader_wrapper = NiceReaderWrapper
+
+ g1 = reader_wrapper( fileinput.FileInput( in_fname ),
chrom_col=chr_col_1,
start_col=start_col_1,
end_col=end_col_1,
strand_col=strand_col_1,
fix_strand=True )
- g2 = NiceReaderWrapper( fileinput.FileInput( in2_fname ),
+ g2 = reader_wrapper( fileinput.FileInput( in2_fname ),
chrom_col=chr_col_2,
start_col=start_col_2,
end_col=end_col_2,
@@ -55,6 +64,8 @@ def main():
try:
for line in subtract( [g1,g2], pieces=pieces, mincols=mincols ):
if type( line ) is GenomicInterval:
+ if gff_format:
+ line = convert_to_gff_coordinates( line )
out_file.write( "%s\n" % "\t".join( line.fields ) )
else:
out_file.write( "%s\n" % line )
--- /dev/null
+++ b/test-data/gops_subtract_in2.gff
@@ -0,0 +1,500 @@
+chr13 Cufflinks transcript 3633324 3651020 1000 + . gene_id "Asb13";
transcript_id "Asb13_dup1"; FPKM "12.1778141008"; frac
"1.000000"; conf_lo "9.224260"; conf_hi "15.131368"; cov
"0.778296";
+chr13 Cufflinks exon 3633324 3633421 1000 + . gene_id "Asb13"; transcript_id
"Asb13_dup1"; exon_number "1"; FPKM "12.1778141008"; frac
"1.000000"; conf_lo "9.224260"; conf_hi "15.131368"; cov
"0.778296";
+chr13 Cufflinks exon 3641311 3641498 1000 + . gene_id "Asb13"; transcript_id
"Asb13_dup1"; exon_number "2"; FPKM "12.1778141008"; frac
"1.000000"; conf_lo "9.224260"; conf_hi "15.131368"; cov
"0.778296";
+chr13 Cufflinks exon 3642721 3642871 1000 + . gene_id "Asb13"; transcript_id
"Asb13_dup1"; exon_number "3"; FPKM "12.1778141008"; frac
"1.000000"; conf_lo "9.224260"; conf_hi "15.131368"; cov
"0.778296";
+chr13 Cufflinks exon 3644162 3644296 1000 + . gene_id "Asb13"; transcript_id
"Asb13_dup1"; exon_number "4"; FPKM "12.1778141008"; frac
"1.000000"; conf_lo "9.224260"; conf_hi "15.131368"; cov
"0.778296";
+chr13 Cufflinks exon 3648565 3648756 1000 + . gene_id "Asb13"; transcript_id
"Asb13_dup1"; exon_number "5"; FPKM "12.1778141008"; frac
"1.000000"; conf_lo "9.224260"; conf_hi "15.131368"; cov
"0.778296";
+chr13 Cufflinks exon 3649426 3651020 1000 + . gene_id "Asb13"; transcript_id
"Asb13_dup1"; exon_number "6"; FPKM "12.1778141008"; frac
"1.000000"; conf_lo "9.224260"; conf_hi "15.131368"; cov
"0.778296";
+chr13 Cufflinks transcript 3802139 3803564 1000 - . gene_id "Calml3";
transcript_id "Calml3"; FPKM "4.8864843670"; frac
"1.000000"; conf_lo "2.480113"; conf_hi "7.292856"; cov
"0.312300";
+chr13 Cufflinks exon 3802139 3803564 1000 - . gene_id "Calml3"; transcript_id
"Calml3"; exon_number "1"; FPKM "4.8864843670"; frac
"1.000000"; conf_lo "2.480113"; conf_hi "7.292856"; cov
"0.312300";
+chr13 Cufflinks transcript 3881809 3892824 1000 - . gene_id "Net1";
transcript_id "Net1_dup1"; FPKM "0.8888261462"; frac
"1.000000"; conf_lo "0.216823"; conf_hi "1.560830"; cov
"0.056806";
+chr13 Cufflinks exon 3881809 3883719 1000 - . gene_id "Net1"; transcript_id
"Net1_dup1"; exon_number "1"; FPKM "0.8888261462"; frac
"1.000000"; conf_lo "0.216823"; conf_hi "1.560830"; cov
"0.056806";
+chr13 Cufflinks exon 3884049 3884235 1000 - . gene_id "Net1"; transcript_id
"Net1_dup1"; exon_number "2"; FPKM "0.8888261462"; frac
"1.000000"; conf_lo "0.216823"; conf_hi "1.560830"; cov
"0.056806";
+chr13 Cufflinks exon 3885294 3885464 1000 - . gene_id "Net1"; transcript_id
"Net1_dup1"; exon_number "3"; FPKM "0.8888261462"; frac
"1.000000"; conf_lo "0.216823"; conf_hi "1.560830"; cov
"0.056806";
+chr13 Cufflinks exon 3885784 3886041 1000 - . gene_id "Net1"; transcript_id
"Net1_dup1"; exon_number "4"; FPKM "0.8888261462"; frac
"1.000000"; conf_lo "0.216823"; conf_hi "1.560830"; cov
"0.056806";
+chr13 Cufflinks exon 3886617 3886693 1000 - . gene_id "Net1"; transcript_id
"Net1_dup1"; exon_number "5"; FPKM "0.8888261462"; frac
"1.000000"; conf_lo "0.216823"; conf_hi "1.560830"; cov
"0.056806";
+chr13 Cufflinks exon 3886817 3886913 1000 - . gene_id "Net1"; transcript_id
"Net1_dup1"; exon_number "6"; FPKM "0.8888261462"; frac
"1.000000"; conf_lo "0.216823"; conf_hi "1.560830"; cov
"0.056806";
+chr13 Cufflinks exon 3887224 3887286 1000 - . gene_id "Net1"; transcript_id
"Net1_dup1"; exon_number "7"; FPKM "0.8888261462"; frac
"1.000000"; conf_lo "0.216823"; conf_hi "1.560830"; cov
"0.056806";
+chr13 Cufflinks exon 3887601 3887768 1000 - . gene_id "Net1"; transcript_id
"Net1_dup1"; exon_number "8"; FPKM "0.8888261462"; frac
"1.000000"; conf_lo "0.216823"; conf_hi "1.560830"; cov
"0.056806";
+chr13 Cufflinks exon 3888117 3888224 1000 - . gene_id "Net1"; transcript_id
"Net1_dup1"; exon_number "9"; FPKM "0.8888261462"; frac
"1.000000"; conf_lo "0.216823"; conf_hi "1.560830"; cov
"0.056806";
+chr13 Cufflinks exon 3892539 3892824 1000 - . gene_id "Net1"; transcript_id
"Net1_dup1"; exon_number "10"; FPKM "0.8888261462"; frac
"1.000000"; conf_lo "0.216823"; conf_hi "1.560830"; cov
"0.056806";
+chr13 Cufflinks transcript 4131873 4149877 1000 - . gene_id "Akr1c18";
transcript_id "Akr1c18"; FPKM "1.0813891587"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "2.330070"; cov
"0.069113";
+chr13 Cufflinks exon 4131873 4132082 1000 - . gene_id "Akr1c18"; transcript_id
"Akr1c18"; exon_number "1"; FPKM "1.0813891587"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "2.330070"; cov
"0.069113";
+chr13 Cufflinks exon 4134449 4134531 1000 - . gene_id "Akr1c18"; transcript_id
"Akr1c18"; exon_number "2"; FPKM "1.0813891587"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "2.330070"; cov
"0.069113";
+chr13 Cufflinks exon 4135848 4136013 1000 - . gene_id "Akr1c18"; transcript_id
"Akr1c18"; exon_number "3"; FPKM "1.0813891587"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "2.330070"; cov
"0.069113";
+chr13 Cufflinks exon 4136380 4136489 1000 - . gene_id "Akr1c18"; transcript_id
"Akr1c18"; exon_number "4"; FPKM "1.0813891587"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "2.330070"; cov
"0.069113";
+chr13 Cufflinks exon 4141373 4141495 1000 - . gene_id "Akr1c18"; transcript_id
"Akr1c18"; exon_number "5"; FPKM "1.0813891587"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "2.330070"; cov
"0.069113";
+chr13 Cufflinks exon 4142464 4142541 1000 - . gene_id "Akr1c18"; transcript_id
"Akr1c18"; exon_number "6"; FPKM "1.0813891587"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "2.330070"; cov
"0.069113";
+chr13 Cufflinks exon 4143536 4143652 1000 - . gene_id "Akr1c18"; transcript_id
"Akr1c18"; exon_number "7"; FPKM "1.0813891587"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "2.330070"; cov
"0.069113";
+chr13 Cufflinks exon 4144452 4144619 1000 - . gene_id "Akr1c18"; transcript_id
"Akr1c18"; exon_number "8"; FPKM "1.0813891587"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "2.330070"; cov
"0.069113";
+chr13 Cufflinks exon 4149761 4149877 1000 - . gene_id "Akr1c18"; transcript_id
"Akr1c18"; exon_number "9"; FPKM "1.0813891587"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "2.330070"; cov
"0.069113";
+chr13 Cufflinks transcript 4232986 4247605 1000 + . gene_id "Akr1c19";
transcript_id "Akr1c19"; FPKM "2.3810296989"; frac
"1.000000"; conf_lo "0.581140"; conf_hi "4.180919"; cov
"0.152174";
+chr13 Cufflinks exon 4232986 4233100 1000 + . gene_id "Akr1c19"; transcript_id
"Akr1c19"; exon_number "1"; FPKM "2.3810296989"; frac
"1.000000"; conf_lo "0.581140"; conf_hi "4.180919"; cov
"0.152174";
+chr13 Cufflinks exon 4235335 4235502 1000 + . gene_id "Akr1c19"; transcript_id
"Akr1c19"; exon_number "2"; FPKM "2.3810296989"; frac
"1.000000"; conf_lo "0.581140"; conf_hi "4.180919"; cov
"0.152174";
+chr13 Cufflinks exon 4236282 4236398 1000 + . gene_id "Akr1c19"; transcript_id
"Akr1c19"; exon_number "3"; FPKM "2.3810296989"; frac
"1.000000"; conf_lo "0.581140"; conf_hi "4.180919"; cov
"0.152174";
+chr13 Cufflinks exon 4237640 4237717 1000 + . gene_id "Akr1c19"; transcript_id
"Akr1c19"; exon_number "4"; FPKM "2.3810296989"; frac
"1.000000"; conf_lo "0.581140"; conf_hi "4.180919"; cov
"0.152174";
+chr13 Cufflinks exon 4238214 4238336 1000 + . gene_id "Akr1c19"; transcript_id
"Akr1c19"; exon_number "5"; FPKM "2.3810296989"; frac
"1.000000"; conf_lo "0.581140"; conf_hi "4.180919"; cov
"0.152174";
+chr13 Cufflinks exon 4241798 4241907 1000 + . gene_id "Akr1c19"; transcript_id
"Akr1c19"; exon_number "6"; FPKM "2.3810296989"; frac
"1.000000"; conf_lo "0.581140"; conf_hi "4.180919"; cov
"0.152174";
+chr13 Cufflinks exon 4242173 4242338 1000 + . gene_id "Akr1c19"; transcript_id
"Akr1c19"; exon_number "7"; FPKM "2.3810296989"; frac
"1.000000"; conf_lo "0.581140"; conf_hi "4.180919"; cov
"0.152174";
+chr13 Cufflinks exon 4246049 4246131 1000 + . gene_id "Akr1c19"; transcript_id
"Akr1c19"; exon_number "8"; FPKM "2.3810296989"; frac
"1.000000"; conf_lo "0.581140"; conf_hi "4.180919"; cov
"0.152174";
+chr13 Cufflinks exon 4247324 4247605 1000 + . gene_id "Akr1c19"; transcript_id
"Akr1c19"; exon_number "9"; FPKM "2.3810296989"; frac
"1.000000"; conf_lo "0.581140"; conf_hi "4.180919"; cov
"0.152174";
+chr13 Cufflinks transcript 4247981 4249023 1000 + . gene_id "Marcksl1-ps4";
transcript_id "Marcksl1-ps4"; FPKM "25.7982124751"; frac
"1.000000"; conf_lo "19.333089"; conf_hi "32.263336"; cov
"1.648789";
+chr13 Cufflinks exon 4247981 4249023 1000 + . gene_id "Marcksl1-ps4";
transcript_id "Marcksl1-ps4"; exon_number "1"; FPKM
"25.7982124751"; frac "1.000000"; conf_lo "19.333089";
conf_hi "32.263336"; cov "1.648789";
+chr13 Cufflinks transcript 4591736 4608410 1000 - . gene_id "Akr1e1";
transcript_id "Akr1e1"; FPKM "11.3445908394"; frac
"1.000000"; conf_lo "7.999254"; conf_hi "14.689928"; cov
"0.725044";
+chr13 Cufflinks exon 4591736 4592544 1000 - . gene_id "Akr1e1"; transcript_id
"Akr1e1"; exon_number "1"; FPKM "11.3445908394"; frac
"1.000000"; conf_lo "7.999254"; conf_hi "14.689928"; cov
"0.725044";
+chr13 Cufflinks exon 4592808 4592890 1000 - . gene_id "Akr1e1"; transcript_id
"Akr1e1"; exon_number "2"; FPKM "11.3445908394"; frac
"1.000000"; conf_lo "7.999254"; conf_hi "14.689928"; cov
"0.725044";
+chr13 Cufflinks exon 4594317 4594400 1000 - . gene_id "Akr1e1"; transcript_id
"Akr1e1"; exon_number "3"; FPKM "11.3445908394"; frac
"1.000000"; conf_lo "7.999254"; conf_hi "14.689928"; cov
"0.725044";
+chr13 Cufflinks exon 4594906 4594978 1000 - . gene_id "Akr1e1"; transcript_id
"Akr1e1"; exon_number "4"; FPKM "11.3445908394"; frac
"1.000000"; conf_lo "7.999254"; conf_hi "14.689928"; cov
"0.725044";
+chr13 Cufflinks exon 4596731 4596828 1000 - . gene_id "Akr1e1"; transcript_id
"Akr1e1"; exon_number "5"; FPKM "11.3445908394"; frac
"1.000000"; conf_lo "7.999254"; conf_hi "14.689928"; cov
"0.725044";
+chr13 Cufflinks exon 4598016 4598138 1000 - . gene_id "Akr1e1"; transcript_id
"Akr1e1"; exon_number "6"; FPKM "11.3445908394"; frac
"1.000000"; conf_lo "7.999254"; conf_hi "14.689928"; cov
"0.725044";
+chr13 Cufflinks exon 4600464 4600541 1000 - . gene_id "Akr1e1"; transcript_id
"Akr1e1"; exon_number "7"; FPKM "11.3445908394"; frac
"1.000000"; conf_lo "7.999254"; conf_hi "14.689928"; cov
"0.725044";
+chr13 Cufflinks exon 4601927 4602043 1000 - . gene_id "Akr1e1"; transcript_id
"Akr1e1"; exon_number "8"; FPKM "11.3445908394"; frac
"1.000000"; conf_lo "7.999254"; conf_hi "14.689928"; cov
"0.725044";
+chr13 Cufflinks exon 4606637 4606804 1000 - . gene_id "Akr1e1"; transcript_id
"Akr1e1"; exon_number "9"; FPKM "11.3445908394"; frac
"1.000000"; conf_lo "7.999254"; conf_hi "14.689928"; cov
"0.725044";
+chr13 Cufflinks exon 4608331 4608410 1000 - . gene_id "Akr1e1"; transcript_id
"Akr1e1"; exon_number "10"; FPKM "11.3445908394"; frac
"1.000000"; conf_lo "7.999254"; conf_hi "14.689928"; cov
"0.725044";
+chr13 Cufflinks transcript 5860735 5869639 1000 + . gene_id "Klf6";
transcript_id "Klf6"; FPKM "24.6944637170"; frac "1.000000";
conf_lo "21.548728"; conf_hi "27.840199"; cov "1.578247";
+chr13 Cufflinks exon 5860735 5861088 1000 + . gene_id "Klf6"; transcript_id
"Klf6"; exon_number "1"; FPKM "24.6944637170"; frac
"1.000000"; conf_lo "21.548728"; conf_hi "27.840199"; cov
"1.578247";
+chr13 Cufflinks exon 5864014 5864590 1000 + . gene_id "Klf6"; transcript_id
"Klf6"; exon_number "2"; FPKM "24.6944637170"; frac
"1.000000"; conf_lo "21.548728"; conf_hi "27.840199"; cov
"1.578247";
+chr13 Cufflinks exon 5865885 5866008 1000 + . gene_id "Klf6"; transcript_id
"Klf6"; exon_number "3"; FPKM "24.6944637170"; frac
"1.000000"; conf_lo "21.548728"; conf_hi "27.840199"; cov
"1.578247";
+chr13 Cufflinks exon 5866478 5869639 1000 + . gene_id "Klf6"; transcript_id
"Klf6"; exon_number "4"; FPKM "24.6944637170"; frac
"1.000000"; conf_lo "21.548728"; conf_hi "27.840199"; cov
"1.578247";
+chr13 Cufflinks transcript 3537321 3565507 1000 + . gene_id "Gdi2";
transcript_id "Gdi2"; FPKM "76.8556374088"; frac "0.936739";
conf_lo "70.179105"; conf_hi "83.532170"; cov "4.911918";
+chr13 Cufflinks exon 3537321 3537589 1000 + . gene_id "Gdi2"; transcript_id
"Gdi2"; exon_number "1"; FPKM "76.8556374088"; frac
"0.936739"; conf_lo "70.179105"; conf_hi "83.532170"; cov
"4.911918";
+chr13 Cufflinks exon 3548109 3548216 1000 + . gene_id "Gdi2"; transcript_id
"Gdi2"; exon_number "2"; FPKM "76.8556374088"; frac
"0.936739"; conf_lo "70.179105"; conf_hi "83.532170"; cov
"4.911918";
+chr13 Cufflinks exon 3550235 3550334 1000 + . gene_id "Gdi2"; transcript_id
"Gdi2"; exon_number "3"; FPKM "76.8556374088"; frac
"0.936739"; conf_lo "70.179105"; conf_hi "83.532170"; cov
"4.911918";
+chr13 Cufflinks exon 3553658 3553792 1000 + . gene_id "Gdi2"; transcript_id
"Gdi2"; exon_number "4"; FPKM "76.8556374088"; frac
"0.936739"; conf_lo "70.179105"; conf_hi "83.532170"; cov
"4.911918";
+chr13 Cufflinks exon 3555560 3555758 1000 + . gene_id "Gdi2"; transcript_id
"Gdi2"; exon_number "5"; FPKM "76.8556374088"; frac
"0.936739"; conf_lo "70.179105"; conf_hi "83.532170"; cov
"4.911918";
+chr13 Cufflinks exon 3556172 3556303 1000 + . gene_id "Gdi2"; transcript_id
"Gdi2"; exon_number "6"; FPKM "76.8556374088"; frac
"0.936739"; conf_lo "70.179105"; conf_hi "83.532170"; cov
"4.911918";
+chr13 Cufflinks exon 3559238 3559337 1000 + . gene_id "Gdi2"; transcript_id
"Gdi2"; exon_number "7"; FPKM "76.8556374088"; frac
"0.936739"; conf_lo "70.179105"; conf_hi "83.532170"; cov
"4.911918";
+chr13 Cufflinks exon 3561112 3561283 1000 + . gene_id "Gdi2"; transcript_id
"Gdi2"; exon_number "8"; FPKM "76.8556374088"; frac
"0.936739"; conf_lo "70.179105"; conf_hi "83.532170"; cov
"4.911918";
+chr13 Cufflinks exon 3563786 3563930 1000 + . gene_id "Gdi2"; transcript_id
"Gdi2"; exon_number "9"; FPKM "76.8556374088"; frac
"0.936739"; conf_lo "70.179105"; conf_hi "83.532170"; cov
"4.911918";
+chr13 Cufflinks exon 3564105 3564159 1000 + . gene_id "Gdi2"; transcript_id
"Gdi2"; exon_number "10"; FPKM "76.8556374088"; frac
"0.936739"; conf_lo "70.179105"; conf_hi "83.532170"; cov
"4.911918";
+chr13 Cufflinks exon 3564242 3565507 1000 + . gene_id "Gdi2"; transcript_id
"Gdi2"; exon_number "11"; FPKM "76.8556374088"; frac
"0.936739"; conf_lo "70.179105"; conf_hi "83.532170"; cov
"4.911918";
+chr13 Cufflinks transcript 3565281 3610354 1000 - . gene_id "BC016423";
transcript_id "BC016423"; FPKM "2.1505644542"; frac
"0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov
"0.137445";
+chr13 Cufflinks exon 3565281 3565913 1000 - . gene_id "BC016423"; transcript_id
"BC016423"; exon_number "1"; FPKM "2.1505644542"; frac
"0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov
"0.137445";
+chr13 Cufflinks exon 3566164 3566278 1000 - . gene_id "BC016423"; transcript_id
"BC016423"; exon_number "2"; FPKM "2.1505644542"; frac
"0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov
"0.137445";
+chr13 Cufflinks exon 3566682 3566863 1000 - . gene_id "BC016423"; transcript_id
"BC016423"; exon_number "3"; FPKM "2.1505644542"; frac
"0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov
"0.137445";
+chr13 Cufflinks exon 3567998 3568103 1000 - . gene_id "BC016423"; transcript_id
"BC016423"; exon_number "4"; FPKM "2.1505644542"; frac
"0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov
"0.137445";
+chr13 Cufflinks exon 3568734 3568887 1000 - . gene_id "BC016423"; transcript_id
"BC016423"; exon_number "5"; FPKM "2.1505644542"; frac
"0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov
"0.137445";
+chr13 Cufflinks exon 3569558 3569683 1000 - . gene_id "BC016423"; transcript_id
"BC016423"; exon_number "6"; FPKM "2.1505644542"; frac
"0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov
"0.137445";
+chr13 Cufflinks exon 3572733 3576446 1000 - . gene_id "BC016423"; transcript_id
"BC016423"; exon_number "7"; FPKM "2.1505644542"; frac
"0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov
"0.137445";
+chr13 Cufflinks exon 3580998 3581439 1000 - . gene_id "BC016423"; transcript_id
"BC016423"; exon_number "8"; FPKM "2.1505644542"; frac
"0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov
"0.137445";
+chr13 Cufflinks exon 3583746 3584619 1000 - . gene_id "BC016423"; transcript_id
"BC016423"; exon_number "9"; FPKM "2.1505644542"; frac
"0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov
"0.137445";
+chr13 Cufflinks exon 3587544 3587780 1000 - . gene_id "BC016423"; transcript_id
"BC016423"; exon_number "10"; FPKM "2.1505644542"; frac
"0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov
"0.137445";
+chr13 Cufflinks exon 3589187 3589894 1000 - . gene_id "BC016423"; transcript_id
"BC016423"; exon_number "11"; FPKM "2.1505644542"; frac
"0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov
"0.137445";
+chr13 Cufflinks exon 3593377 3593439 1000 - . gene_id "BC016423"; transcript_id
"BC016423"; exon_number "12"; FPKM "2.1505644542"; frac
"0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov
"0.137445";
+chr13 Cufflinks exon 3593539 3593611 1000 - . gene_id "BC016423"; transcript_id
"BC016423"; exon_number "13"; FPKM "2.1505644542"; frac
"0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov
"0.137445";
+chr13 Cufflinks exon 3594743 3594846 1000 - . gene_id "BC016423"; transcript_id
"BC016423"; exon_number "14"; FPKM "2.1505644542"; frac
"0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov
"0.137445";
+chr13 Cufflinks exon 3596023 3596123 1000 - . gene_id "BC016423"; transcript_id
"BC016423"; exon_number "15"; FPKM "2.1505644542"; frac
"0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov
"0.137445";
+chr13 Cufflinks exon 3598898 3598997 1000 - . gene_id "BC016423"; transcript_id
"BC016423"; exon_number "16"; FPKM "2.1505644542"; frac
"0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov
"0.137445";
+chr13 Cufflinks exon 3599083 3599102 1000 - . gene_id "BC016423"; transcript_id
"BC016423"; exon_number "17"; FPKM "2.1505644542"; frac
"0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov
"0.137445";
+chr13 Cufflinks exon 3599185 3599308 1000 - . gene_id "BC016423"; transcript_id
"BC016423"; exon_number "18"; FPKM "2.1505644542"; frac
"0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov
"0.137445";
+chr13 Cufflinks exon 3599438 3599580 1000 - . gene_id "BC016423"; transcript_id
"BC016423"; exon_number "19"; FPKM "2.1505644542"; frac
"0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov
"0.137445";
+chr13 Cufflinks exon 3610036 3610354 1000 - . gene_id "BC016423"; transcript_id
"BC016423"; exon_number "20"; FPKM "2.1505644542"; frac
"0.063261"; conf_lo "2.092265"; conf_hi "2.208864"; cov
"0.137445";
+chr13 Cufflinks transcript 8202155 8759554 1000 + . gene_id "Adarb2";
transcript_id "Adarb2"; FPKM "0.3097233856"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "0.619447"; cov
"0.019795";
+chr13 Cufflinks exon 8202155 8202566 1000 + . gene_id "Adarb2"; transcript_id
"Adarb2"; exon_number "1"; FPKM "0.3097233856"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "0.619447"; cov
"0.019795";
+chr13 Cufflinks exon 8558350 8558436 1000 + . gene_id "Adarb2"; transcript_id
"Adarb2"; exon_number "2"; FPKM "0.3097233856"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "0.619447"; cov
"0.019795";
+chr13 Cufflinks exon 8568913 8569820 1000 + . gene_id "Adarb2"; transcript_id
"Adarb2"; exon_number "3"; FPKM "0.3097233856"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "0.619447"; cov
"0.019795";
+chr13 Cufflinks exon 8671651 8671765 1000 + . gene_id "Adarb2"; transcript_id
"Adarb2"; exon_number "4"; FPKM "0.3097233856"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "0.619447"; cov
"0.019795";
+chr13 Cufflinks exon 8696866 8697034 1000 + . gene_id "Adarb2"; transcript_id
"Adarb2"; exon_number "5"; FPKM "0.3097233856"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "0.619447"; cov
"0.019795";
+chr13 Cufflinks exon 8700826 8700977 1000 + . gene_id "Adarb2"; transcript_id
"Adarb2"; exon_number "6"; FPKM "0.3097233856"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "0.619447"; cov
"0.019795";
+chr13 Cufflinks exon 8712846 8713014 1000 + . gene_id "Adarb2"; transcript_id
"Adarb2"; exon_number "7"; FPKM "0.3097233856"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "0.619447"; cov
"0.019795";
+chr13 Cufflinks exon 8731036 8731217 1000 + . gene_id "Adarb2"; transcript_id
"Adarb2"; exon_number "8"; FPKM "0.3097233856"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "0.619447"; cov
"0.019795";
+chr13 Cufflinks exon 8751819 8751997 1000 + . gene_id "Adarb2"; transcript_id
"Adarb2"; exon_number "9"; FPKM "0.3097233856"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "0.619447"; cov
"0.019795";
+chr13 Cufflinks exon 8756472 8759554 1000 + . gene_id "Adarb2"; transcript_id
"Adarb2"; exon_number "10"; FPKM "0.3097233856"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "0.619447"; cov
"0.019795";
+chr13 Cufflinks transcript 8884852 8891641 1000 + . gene_id "Idi1";
transcript_id "Idi1"; FPKM "8.4668138233"; frac "1.000000";
conf_lo "6.232490"; conf_hi "10.701138"; cov "0.541122";
+chr13 Cufflinks exon 8884852 8885242 1000 + . gene_id "Idi1"; transcript_id
"Idi1"; exon_number "1"; FPKM "8.4668138233"; frac
"1.000000"; conf_lo "6.232490"; conf_hi "10.701138"; cov
"0.541122";
+chr13 Cufflinks exon 8885978 8886150 1000 + . gene_id "Idi1"; transcript_id
"Idi1"; exon_number "2"; FPKM "8.4668138233"; frac
"1.000000"; conf_lo "6.232490"; conf_hi "10.701138"; cov
"0.541122";
+chr13 Cufflinks exon 8886731 8886823 1000 + . gene_id "Idi1"; transcript_id
"Idi1"; exon_number "3"; FPKM "8.4668138233"; frac
"1.000000"; conf_lo "6.232490"; conf_hi "10.701138"; cov
"0.541122";
+chr13 Cufflinks exon 8887169 8887299 1000 + . gene_id "Idi1"; transcript_id
"Idi1"; exon_number "4"; FPKM "8.4668138233"; frac
"1.000000"; conf_lo "6.232490"; conf_hi "10.701138"; cov
"0.541122";
+chr13 Cufflinks exon 8889564 8891641 1000 + . gene_id "Idi1"; transcript_id
"Idi1"; exon_number "5"; FPKM "8.4668138233"; frac
"1.000000"; conf_lo "6.232490"; conf_hi "10.701138"; cov
"0.541122";
+chr13 Cufflinks transcript 8802214 8870288 1000 - . gene_id "Wdr37";
transcript_id "Wdr37_dup1"; FPKM "10.9531067880"; frac
"0.877818"; conf_lo "8.946273"; conf_hi "12.959940"; cov
"0.700024";
+chr13 Cufflinks exon 8802214 8805192 1000 - . gene_id "Wdr37"; transcript_id
"Wdr37_dup1"; exon_number "1"; FPKM "10.9531067880"; frac
"0.877818"; conf_lo "8.946273"; conf_hi "12.959940"; cov
"0.700024";
+chr13 Cufflinks exon 8819109 8819223 1000 - . gene_id "Wdr37"; transcript_id
"Wdr37_dup1"; exon_number "2"; FPKM "10.9531067880"; frac
"0.877818"; conf_lo "8.946273"; conf_hi "12.959940"; cov
"0.700024";
+chr13 Cufflinks exon 8819657 8819791 1000 - . gene_id "Wdr37"; transcript_id
"Wdr37_dup1"; exon_number "3"; FPKM "10.9531067880"; frac
"0.877818"; conf_lo "8.946273"; conf_hi "12.959940"; cov
"0.700024";
+chr13 Cufflinks exon 8834543 8834684 1000 - . gene_id "Wdr37"; transcript_id
"Wdr37_dup1"; exon_number "4"; FPKM "10.9531067880"; frac
"0.877818"; conf_lo "8.946273"; conf_hi "12.959940"; cov
"0.700024";
+chr13 Cufflinks exon 8836029 8836269 1000 - . gene_id "Wdr37"; transcript_id
"Wdr37_dup1"; exon_number "5"; FPKM "10.9531067880"; frac
"0.877818"; conf_lo "8.946273"; conf_hi "12.959940"; cov
"0.700024";
+chr13 Cufflinks exon 8841976 8842052 1000 - . gene_id "Wdr37"; transcript_id
"Wdr37_dup1"; exon_number "6"; FPKM "10.9531067880"; frac
"0.877818"; conf_lo "8.946273"; conf_hi "12.959940"; cov
"0.700024";
+chr13 Cufflinks exon 8844033 8844077 1000 - . gene_id "Wdr37"; transcript_id
"Wdr37_dup1"; exon_number "7"; FPKM "10.9531067880"; frac
"0.877818"; conf_lo "8.946273"; conf_hi "12.959940"; cov
"0.700024";
+chr13 Cufflinks exon 8846861 8846932 1000 - . gene_id "Wdr37"; transcript_id
"Wdr37_dup1"; exon_number "8"; FPKM "10.9531067880"; frac
"0.877818"; conf_lo "8.946273"; conf_hi "12.959940"; cov
"0.700024";
+chr13 Cufflinks exon 8848780 8848915 1000 - . gene_id "Wdr37"; transcript_id
"Wdr37_dup1"; exon_number "9"; FPKM "10.9531067880"; frac
"0.877818"; conf_lo "8.946273"; conf_hi "12.959940"; cov
"0.700024";
+chr13 Cufflinks exon 8852916 8852980 1000 - . gene_id "Wdr37"; transcript_id
"Wdr37_dup1"; exon_number "10"; FPKM "10.9531067880"; frac
"0.877818"; conf_lo "8.946273"; conf_hi "12.959940"; cov
"0.700024";
+chr13 Cufflinks exon 8853246 8853341 1000 - . gene_id "Wdr37"; transcript_id
"Wdr37_dup1"; exon_number "11"; FPKM "10.9531067880"; frac
"0.877818"; conf_lo "8.946273"; conf_hi "12.959940"; cov
"0.700024";
+chr13 Cufflinks exon 8856078 8856174 1000 - . gene_id "Wdr37"; transcript_id
"Wdr37_dup1"; exon_number "12"; FPKM "10.9531067880"; frac
"0.877818"; conf_lo "8.946273"; conf_hi "12.959940"; cov
"0.700024";
+chr13 Cufflinks exon 8860334 8860511 1000 - . gene_id "Wdr37"; transcript_id
"Wdr37_dup1"; exon_number "13"; FPKM "10.9531067880"; frac
"0.877818"; conf_lo "8.946273"; conf_hi "12.959940"; cov
"0.700024";
+chr13 Cufflinks exon 8870116 8870288 1000 - . gene_id "Wdr37"; transcript_id
"Wdr37_dup1"; exon_number "14"; FPKM "10.9531067880"; frac
"0.877818"; conf_lo "8.946273"; conf_hi "12.959940"; cov
"0.700024";
+chr13 Cufflinks transcript 8849725 8870288 157 - . gene_id "Wdr37";
transcript_id "Wdr37_dup2"; FPKM "1.7230711203"; frac
"0.122182"; conf_lo "0.834480"; conf_hi "2.611663"; cov
"0.110123";
+chr13 Cufflinks exon 8849725 8852980 157 - . gene_id "Wdr37"; transcript_id
"Wdr37_dup2"; exon_number "1"; FPKM "1.7230711203"; frac
"0.122182"; conf_lo "0.834480"; conf_hi "2.611663"; cov
"0.110123";
+chr13 Cufflinks exon 8853246 8853341 157 - . gene_id "Wdr37"; transcript_id
"Wdr37_dup2"; exon_number "2"; FPKM "1.7230711203"; frac
"0.122182"; conf_lo "0.834480"; conf_hi "2.611663"; cov
"0.110123";
+chr13 Cufflinks exon 8856078 8856174 157 - . gene_id "Wdr37"; transcript_id
"Wdr37_dup2"; exon_number "3"; FPKM "1.7230711203"; frac
"0.122182"; conf_lo "0.834480"; conf_hi "2.611663"; cov
"0.110123";
+chr13 Cufflinks exon 8860334 8860511 157 - . gene_id "Wdr37"; transcript_id
"Wdr37_dup2"; exon_number "4"; FPKM "1.7230711203"; frac
"0.122182"; conf_lo "0.834480"; conf_hi "2.611663"; cov
"0.110123";
+chr13 Cufflinks exon 8870116 8870288 157 - . gene_id "Wdr37"; transcript_id
"Wdr37_dup2"; exon_number "5"; FPKM "1.7230711203"; frac
"0.122182"; conf_lo "0.834480"; conf_hi "2.611663"; cov
"0.110123";
+chr13 Cufflinks transcript 8971724 8995258 1000 - . gene_id "Gtpbp4";
transcript_id "Gtpbp4"; FPKM "12.4340841673"; frac
"1.000000"; conf_lo "9.571967"; conf_hi "15.296201"; cov
"0.794674";
+chr13 Cufflinks exon 8971724 8972520 1000 - . gene_id "Gtpbp4"; transcript_id
"Gtpbp4"; exon_number "1"; FPKM "12.4340841673"; frac
"1.000000"; conf_lo "9.571967"; conf_hi "15.296201"; cov
"0.794674";
+chr13 Cufflinks exon 8973410 8973553 1000 - . gene_id "Gtpbp4"; transcript_id
"Gtpbp4"; exon_number "2"; FPKM "12.4340841673"; frac
"1.000000"; conf_lo "9.571967"; conf_hi "15.296201"; cov
"0.794674";
+chr13 Cufflinks exon 8974191 8974256 1000 - . gene_id "Gtpbp4"; transcript_id
"Gtpbp4"; exon_number "3"; FPKM "12.4340841673"; frac
"1.000000"; conf_lo "9.571967"; conf_hi "15.296201"; cov
"0.794674";
+chr13 Cufflinks exon 8976482 8976679 1000 - . gene_id "Gtpbp4"; transcript_id
"Gtpbp4"; exon_number "4"; FPKM "12.4340841673"; frac
"1.000000"; conf_lo "9.571967"; conf_hi "15.296201"; cov
"0.794674";
+chr13 Cufflinks exon 8977774 8977874 1000 - . gene_id "Gtpbp4"; transcript_id
"Gtpbp4"; exon_number "5"; FPKM "12.4340841673"; frac
"1.000000"; conf_lo "9.571967"; conf_hi "15.296201"; cov
"0.794674";
+chr13 Cufflinks exon 8978675 8978726 1000 - . gene_id "Gtpbp4"; transcript_id
"Gtpbp4"; exon_number "6"; FPKM "12.4340841673"; frac
"1.000000"; conf_lo "9.571967"; conf_hi "15.296201"; cov
"0.794674";
+chr13 Cufflinks exon 8979148 8979225 1000 - . gene_id "Gtpbp4"; transcript_id
"Gtpbp4"; exon_number "7"; FPKM "12.4340841673"; frac
"1.000000"; conf_lo "9.571967"; conf_hi "15.296201"; cov
"0.794674";
+chr13 Cufflinks exon 8984455 8984565 1000 - . gene_id "Gtpbp4"; transcript_id
"Gtpbp4"; exon_number "8"; FPKM "12.4340841673"; frac
"1.000000"; conf_lo "9.571967"; conf_hi "15.296201"; cov
"0.794674";
+chr13 Cufflinks exon 8984884 8984973 1000 - . gene_id "Gtpbp4"; transcript_id
"Gtpbp4"; exon_number "9"; FPKM "12.4340841673"; frac
"1.000000"; conf_lo "9.571967"; conf_hi "15.296201"; cov
"0.794674";
+chr13 Cufflinks exon 8986495 8986560 1000 - . gene_id "Gtpbp4"; transcript_id
"Gtpbp4"; exon_number "10"; FPKM "12.4340841673"; frac
"1.000000"; conf_lo "9.571967"; conf_hi "15.296201"; cov
"0.794674";
+chr13 Cufflinks exon 8987002 8987193 1000 - . gene_id "Gtpbp4"; transcript_id
"Gtpbp4"; exon_number "11"; FPKM "12.4340841673"; frac
"1.000000"; conf_lo "9.571967"; conf_hi "15.296201"; cov
"0.794674";
+chr13 Cufflinks exon 8988299 8988391 1000 - . gene_id "Gtpbp4"; transcript_id
"Gtpbp4"; exon_number "12"; FPKM "12.4340841673"; frac
"1.000000"; conf_lo "9.571967"; conf_hi "15.296201"; cov
"0.794674";
+chr13 Cufflinks exon 8989944 8990044 1000 - . gene_id "Gtpbp4"; transcript_id
"Gtpbp4"; exon_number "13"; FPKM "12.4340841673"; frac
"1.000000"; conf_lo "9.571967"; conf_hi "15.296201"; cov
"0.794674";
+chr13 Cufflinks exon 8990961 8991097 1000 - . gene_id "Gtpbp4"; transcript_id
"Gtpbp4"; exon_number "14"; FPKM "12.4340841673"; frac
"1.000000"; conf_lo "9.571967"; conf_hi "15.296201"; cov
"0.794674";
+chr13 Cufflinks exon 8991178 8991281 1000 - . gene_id "Gtpbp4"; transcript_id
"Gtpbp4"; exon_number "15"; FPKM "12.4340841673"; frac
"1.000000"; conf_lo "9.571967"; conf_hi "15.296201"; cov
"0.794674";
+chr13 Cufflinks exon 8991891 8992061 1000 - . gene_id "Gtpbp4"; transcript_id
"Gtpbp4"; exon_number "16"; FPKM "12.4340841673"; frac
"1.000000"; conf_lo "9.571967"; conf_hi "15.296201"; cov
"0.794674";
+chr13 Cufflinks exon 8995195 8995258 1000 - . gene_id "Gtpbp4"; transcript_id
"Gtpbp4"; exon_number "17"; FPKM "12.4340841673"; frac
"1.000000"; conf_lo "9.571967"; conf_hi "15.296201"; cov
"0.794674";
+chr13 Cufflinks transcript 6547403 6579395 1000 + . gene_id "Pitrm1";
transcript_id "Pitrm1"; FPKM "4.2490599857"; frac
"0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov
"0.271562";
+chr13 Cufflinks exon 6547403 6547475 1000 + . gene_id "Pitrm1"; transcript_id
"Pitrm1"; exon_number "1"; FPKM "4.2490599857"; frac
"0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov
"0.271562";
+chr13 Cufflinks exon 6548826 6548928 1000 + . gene_id "Pitrm1"; transcript_id
"Pitrm1"; exon_number "2"; FPKM "4.2490599857"; frac
"0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov
"0.271562";
+chr13 Cufflinks exon 6551880 6551986 1000 + . gene_id "Pitrm1"; transcript_id
"Pitrm1"; exon_number "3"; FPKM "4.2490599857"; frac
"0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov
"0.271562";
+chr13 Cufflinks exon 6552428 6552579 1000 + . gene_id "Pitrm1"; transcript_id
"Pitrm1"; exon_number "4"; FPKM "4.2490599857"; frac
"0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov
"0.271562";
+chr13 Cufflinks exon 6554600 6554714 1000 + . gene_id "Pitrm1"; transcript_id
"Pitrm1"; exon_number "5"; FPKM "4.2490599857"; frac
"0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov
"0.271562";
+chr13 Cufflinks exon 6554798 6554894 1000 + . gene_id "Pitrm1"; transcript_id
"Pitrm1"; exon_number "6"; FPKM "4.2490599857"; frac
"0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov
"0.271562";
+chr13 Cufflinks exon 6555788 6555948 1000 + . gene_id "Pitrm1"; transcript_id
"Pitrm1"; exon_number "7"; FPKM "4.2490599857"; frac
"0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov
"0.271562";
+chr13 Cufflinks exon 6557008 6557134 1000 + . gene_id "Pitrm1"; transcript_id
"Pitrm1"; exon_number "8"; FPKM "4.2490599857"; frac
"0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov
"0.271562";
+chr13 Cufflinks exon 6557402 6557490 1000 + . gene_id "Pitrm1"; transcript_id
"Pitrm1"; exon_number "9"; FPKM "4.2490599857"; frac
"0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov
"0.271562";
+chr13 Cufflinks exon 6558601 6558729 1000 + . gene_id "Pitrm1"; transcript_id
"Pitrm1"; exon_number "10"; FPKM "4.2490599857"; frac
"0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov
"0.271562";
+chr13 Cufflinks exon 6559276 6559389 1000 + . gene_id "Pitrm1"; transcript_id
"Pitrm1"; exon_number "11"; FPKM "4.2490599857"; frac
"0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov
"0.271562";
+chr13 Cufflinks exon 6559848 6559944 1000 + . gene_id "Pitrm1"; transcript_id
"Pitrm1"; exon_number "12"; FPKM "4.2490599857"; frac
"0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov
"0.271562";
+chr13 Cufflinks exon 6561199 6561333 1000 + . gene_id "Pitrm1"; transcript_id
"Pitrm1"; exon_number "13"; FPKM "4.2490599857"; frac
"0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov
"0.271562";
+chr13 Cufflinks exon 6562622 6562760 1000 + . gene_id "Pitrm1"; transcript_id
"Pitrm1"; exon_number "14"; FPKM "4.2490599857"; frac
"0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov
"0.271562";
+chr13 Cufflinks exon 6564237 6564353 1000 + . gene_id "Pitrm1"; transcript_id
"Pitrm1"; exon_number "15"; FPKM "4.2490599857"; frac
"0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov
"0.271562";
+chr13 Cufflinks exon 6566596 6566728 1000 + . gene_id "Pitrm1"; transcript_id
"Pitrm1"; exon_number "16"; FPKM "4.2490599857"; frac
"0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov
"0.271562";
+chr13 Cufflinks exon 6567910 6568030 1000 + . gene_id "Pitrm1"; transcript_id
"Pitrm1"; exon_number "17"; FPKM "4.2490599857"; frac
"0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov
"0.271562";
+chr13 Cufflinks exon 6568145 6568221 1000 + . gene_id "Pitrm1"; transcript_id
"Pitrm1"; exon_number "18"; FPKM "4.2490599857"; frac
"0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov
"0.271562";
+chr13 Cufflinks exon 6568446 6568611 1000 + . gene_id "Pitrm1"; transcript_id
"Pitrm1"; exon_number "19"; FPKM "4.2490599857"; frac
"0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov
"0.271562";
+chr13 Cufflinks exon 6569848 6569948 1000 + . gene_id "Pitrm1"; transcript_id
"Pitrm1"; exon_number "20"; FPKM "4.2490599857"; frac
"0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov
"0.271562";
+chr13 Cufflinks exon 6572287 6572407 1000 + . gene_id "Pitrm1"; transcript_id
"Pitrm1"; exon_number "21"; FPKM "4.2490599857"; frac
"0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov
"0.271562";
+chr13 Cufflinks exon 6573606 6573677 1000 + . gene_id "Pitrm1"; transcript_id
"Pitrm1"; exon_number "22"; FPKM "4.2490599857"; frac
"0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov
"0.271562";
+chr13 Cufflinks exon 6574263 6574375 1000 + . gene_id "Pitrm1"; transcript_id
"Pitrm1"; exon_number "23"; FPKM "4.2490599857"; frac
"0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov
"0.271562";
+chr13 Cufflinks exon 6576636 6576761 1000 + . gene_id "Pitrm1"; transcript_id
"Pitrm1"; exon_number "24"; FPKM "4.2490599857"; frac
"0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov
"0.271562";
+chr13 Cufflinks exon 6577687 6577832 1000 + . gene_id "Pitrm1"; transcript_id
"Pitrm1"; exon_number "25"; FPKM "4.2490599857"; frac
"0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov
"0.271562";
+chr13 Cufflinks exon 6578664 6578766 1000 + . gene_id "Pitrm1"; transcript_id
"Pitrm1"; exon_number "26"; FPKM "4.2490599857"; frac
"0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov
"0.271562";
+chr13 Cufflinks exon 6578896 6579395 1000 + . gene_id "Pitrm1"; transcript_id
"Pitrm1"; exon_number "27"; FPKM "4.2490599857"; frac
"0.057472"; conf_lo "4.134020"; conf_hi "4.364100"; cov
"0.271562";
+chr13 Cufflinks transcript 6579120 6647970 1000 - . gene_id "Pfkp";
transcript_id "Pfkp"; FPKM "66.8416627010"; frac "0.942528";
conf_lo "61.669981"; conf_hi "72.013344"; cov "4.271915";
+chr13 Cufflinks exon 6579120 6580838 1000 - . gene_id "Pfkp"; transcript_id
"Pfkp"; exon_number "1"; FPKM "66.8416627010"; frac
"0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov
"4.271915";
+chr13 Cufflinks exon 6581649 6581751 1000 - . gene_id "Pfkp"; transcript_id
"Pfkp"; exon_number "2"; FPKM "66.8416627010"; frac
"0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov
"4.271915";
+chr13 Cufflinks exon 6583847 6583946 1000 - . gene_id "Pfkp"; transcript_id
"Pfkp"; exon_number "3"; FPKM "66.8416627010"; frac
"0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov
"4.271915";
+chr13 Cufflinks exon 6585726 6585837 1000 - . gene_id "Pfkp"; transcript_id
"Pfkp"; exon_number "4"; FPKM "66.8416627010"; frac
"0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov
"4.271915";
+chr13 Cufflinks exon 6586298 6586359 1000 - . gene_id "Pfkp"; transcript_id
"Pfkp"; exon_number "5"; FPKM "66.8416627010"; frac
"0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov
"4.271915";
+chr13 Cufflinks exon 6587735 6587899 1000 - . gene_id "Pfkp"; transcript_id
"Pfkp"; exon_number "6"; FPKM "66.8416627010"; frac
"0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov
"4.271915";
+chr13 Cufflinks exon 6597105 6597257 1000 - . gene_id "Pfkp"; transcript_id
"Pfkp"; exon_number "7"; FPKM "66.8416627010"; frac
"0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov
"4.271915";
+chr13 Cufflinks exon 6597985 6598072 1000 - . gene_id "Pfkp"; transcript_id
"Pfkp"; exon_number "8"; FPKM "66.8416627010"; frac
"0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov
"4.271915";
+chr13 Cufflinks exon 6599842 6599912 1000 - . gene_id "Pfkp"; transcript_id
"Pfkp"; exon_number "9"; FPKM "66.8416627010"; frac
"0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov
"4.271915";
+chr13 Cufflinks exon 6601959 6602105 1000 - . gene_id "Pfkp"; transcript_id
"Pfkp"; exon_number "10"; FPKM "66.8416627010"; frac
"0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov
"4.271915";
+chr13 Cufflinks exon 6602325 6602394 1000 - . gene_id "Pfkp"; transcript_id
"Pfkp"; exon_number "11"; FPKM "66.8416627010"; frac
"0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov
"4.271915";
+chr13 Cufflinks exon 6602645 6602709 1000 - . gene_id "Pfkp"; transcript_id
"Pfkp"; exon_number "12"; FPKM "66.8416627010"; frac
"0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov
"4.271915";
+chr13 Cufflinks exon 6604202 6604327 1000 - . gene_id "Pfkp"; transcript_id
"Pfkp"; exon_number "13"; FPKM "66.8416627010"; frac
"0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov
"4.271915";
+chr13 Cufflinks exon 6604882 6604974 1000 - . gene_id "Pfkp"; transcript_id
"Pfkp"; exon_number "14"; FPKM "66.8416627010"; frac
"0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov
"4.271915";
+chr13 Cufflinks exon 6613950 6614045 1000 - . gene_id "Pfkp"; transcript_id
"Pfkp"; exon_number "15"; FPKM "66.8416627010"; frac
"0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov
"4.271915";
+chr13 Cufflinks exon 6618421 6618529 1000 - . gene_id "Pfkp"; transcript_id
"Pfkp"; exon_number "16"; FPKM "66.8416627010"; frac
"0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov
"4.271915";
+chr13 Cufflinks exon 6618766 6618810 1000 - . gene_id "Pfkp"; transcript_id
"Pfkp"; exon_number "17"; FPKM "66.8416627010"; frac
"0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov
"4.271915";
+chr13 Cufflinks exon 6620132 6620297 1000 - . gene_id "Pfkp"; transcript_id
"Pfkp"; exon_number "18"; FPKM "66.8416627010"; frac
"0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov
"4.271915";
+chr13 Cufflinks exon 6621153 6621342 1000 - . gene_id "Pfkp"; transcript_id
"Pfkp"; exon_number "19"; FPKM "66.8416627010"; frac
"0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov
"4.271915";
+chr13 Cufflinks exon 6624382 6624459 1000 - . gene_id "Pfkp"; transcript_id
"Pfkp"; exon_number "20"; FPKM "66.8416627010"; frac
"0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov
"4.271915";
+chr13 Cufflinks exon 6635171 6635244 1000 - . gene_id "Pfkp"; transcript_id
"Pfkp"; exon_number "21"; FPKM "66.8416627010"; frac
"0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov
"4.271915";
+chr13 Cufflinks exon 6647817 6647970 1000 - . gene_id "Pfkp"; transcript_id
"Pfkp"; exon_number "22"; FPKM "66.8416627010"; frac
"0.942528"; conf_lo "61.669981"; conf_hi "72.013344"; cov
"4.271915";
+chr13 Cufflinks transcript 9093151 9172336 1000 + . gene_id "Larp4b";
transcript_id "Larp4b"; FPKM "14.5987536424"; frac
"1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov
"0.933020";
+chr13 Cufflinks exon 9093151 9093426 1000 + . gene_id "Larp4b"; transcript_id
"Larp4b"; exon_number "1"; FPKM "14.5987536424"; frac
"1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov
"0.933020";
+chr13 Cufflinks exon 9121354 9121472 1000 + . gene_id "Larp4b"; transcript_id
"Larp4b"; exon_number "2"; FPKM "14.5987536424"; frac
"1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov
"0.933020";
+chr13 Cufflinks exon 9123149 9123208 1000 + . gene_id "Larp4b"; transcript_id
"Larp4b"; exon_number "3"; FPKM "14.5987536424"; frac
"1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov
"0.933020";
+chr13 Cufflinks exon 9136025 9136172 1000 + . gene_id "Larp4b"; transcript_id
"Larp4b"; exon_number "4"; FPKM "14.5987536424"; frac
"1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov
"0.933020";
+chr13 Cufflinks exon 9136401 9136547 1000 + . gene_id "Larp4b"; transcript_id
"Larp4b"; exon_number "5"; FPKM "14.5987536424"; frac
"1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov
"0.933020";
+chr13 Cufflinks exon 9143000 9143078 1000 + . gene_id "Larp4b"; transcript_id
"Larp4b"; exon_number "6"; FPKM "14.5987536424"; frac
"1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov
"0.933020";
+chr13 Cufflinks exon 9144628 9144764 1000 + . gene_id "Larp4b"; transcript_id
"Larp4b"; exon_number "7"; FPKM "14.5987536424"; frac
"1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov
"0.933020";
+chr13 Cufflinks exon 9146647 9146750 1000 + . gene_id "Larp4b"; transcript_id
"Larp4b"; exon_number "8"; FPKM "14.5987536424"; frac
"1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov
"0.933020";
+chr13 Cufflinks exon 9149072 9149182 1000 + . gene_id "Larp4b"; transcript_id
"Larp4b"; exon_number "9"; FPKM "14.5987536424"; frac
"1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov
"0.933020";
+chr13 Cufflinks exon 9150111 9150164 1000 + . gene_id "Larp4b"; transcript_id
"Larp4b"; exon_number "10"; FPKM "14.5987536424"; frac
"1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov
"0.933020";
+chr13 Cufflinks exon 9150261 9150470 1000 + . gene_id "Larp4b"; transcript_id
"Larp4b"; exon_number "11"; FPKM "14.5987536424"; frac
"1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov
"0.933020";
+chr13 Cufflinks exon 9157369 9157475 1000 + . gene_id "Larp4b"; transcript_id
"Larp4b"; exon_number "12"; FPKM "14.5987536424"; frac
"1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov
"0.933020";
+chr13 Cufflinks exon 9157797 9158048 1000 + . gene_id "Larp4b"; transcript_id
"Larp4b"; exon_number "13"; FPKM "14.5987536424"; frac
"1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov
"0.933020";
+chr13 Cufflinks exon 9163921 9163966 1000 + . gene_id "Larp4b"; transcript_id
"Larp4b"; exon_number "14"; FPKM "14.5987536424"; frac
"1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov
"0.933020";
+chr13 Cufflinks exon 9165563 9165727 1000 + . gene_id "Larp4b"; transcript_id
"Larp4b"; exon_number "15"; FPKM "14.5987536424"; frac
"1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov
"0.933020";
+chr13 Cufflinks exon 9167924 9168048 1000 + . gene_id "Larp4b"; transcript_id
"Larp4b"; exon_number "16"; FPKM "14.5987536424"; frac
"1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov
"0.933020";
+chr13 Cufflinks exon 9168144 9168252 1000 + . gene_id "Larp4b"; transcript_id
"Larp4b"; exon_number "17"; FPKM "14.5987536424"; frac
"1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov
"0.933020";
+chr13 Cufflinks exon 9169898 9172336 1000 + . gene_id "Larp4b"; transcript_id
"Larp4b"; exon_number "18"; FPKM "14.5987536424"; frac
"1.000000"; conf_lo "12.304781"; conf_hi "16.892726"; cov
"0.933020";
+chr13 Cufflinks transcript 9275772 9668171 1000 + . gene_id "Dip2c";
transcript_id "Dip2c"; FPKM "6.8147483305"; frac "1.000000";
conf_lo "5.616832"; conf_hi "8.012665"; cov "0.435537";
+chr13 Cufflinks exon 9275772 9276312 1000 + . gene_id "Dip2c"; transcript_id
"Dip2c"; exon_number "1"; FPKM "6.8147483305"; frac
"1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov
"0.435537";
+chr13 Cufflinks exon 9492351 9492422 1000 + . gene_id "Dip2c"; transcript_id
"Dip2c"; exon_number "2"; FPKM "6.8147483305"; frac
"1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov
"0.435537";
+chr13 Cufflinks exon 9505825 9505935 1000 + . gene_id "Dip2c"; transcript_id
"Dip2c"; exon_number "3"; FPKM "6.8147483305"; frac
"1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov
"0.435537";
+chr13 Cufflinks exon 9532498 9532623 1000 + . gene_id "Dip2c"; transcript_id
"Dip2c"; exon_number "4"; FPKM "6.8147483305"; frac
"1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov
"0.435537";
+chr13 Cufflinks exon 9535902 9536111 1000 + . gene_id "Dip2c"; transcript_id
"Dip2c"; exon_number "5"; FPKM "6.8147483305"; frac
"1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov
"0.435537";
+chr13 Cufflinks exon 9549430 9549564 1000 + . gene_id "Dip2c"; transcript_id
"Dip2c"; exon_number "6"; FPKM "6.8147483305"; frac
"1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov
"0.435537";
+chr13 Cufflinks exon 9550992 9551111 1000 + . gene_id "Dip2c"; transcript_id
"Dip2c"; exon_number "7"; FPKM "6.8147483305"; frac
"1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov
"0.435537";
+chr13 Cufflinks exon 9552520 9552717 1000 + . gene_id "Dip2c"; transcript_id
"Dip2c"; exon_number "8"; FPKM "6.8147483305"; frac
"1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov
"0.435537";
+chr13 Cufflinks exon 9559917 9560008 1000 + . gene_id "Dip2c"; transcript_id
"Dip2c"; exon_number "9"; FPKM "6.8147483305"; frac
"1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov
"0.435537";
+chr13 Cufflinks exon 9562360 9562470 1000 + . gene_id "Dip2c"; transcript_id
"Dip2c"; exon_number "10"; FPKM "6.8147483305"; frac
"1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov
"0.435537";
+chr13 Cufflinks exon 9567077 9567200 1000 + . gene_id "Dip2c"; transcript_id
"Dip2c"; exon_number "11"; FPKM "6.8147483305"; frac
"1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov
"0.435537";
+chr13 Cufflinks exon 9567547 9567656 1000 + . gene_id "Dip2c"; transcript_id
"Dip2c"; exon_number "12"; FPKM "6.8147483305"; frac
"1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov
"0.435537";
+chr13 Cufflinks exon 9567837 9567939 1000 + . gene_id "Dip2c"; transcript_id
"Dip2c"; exon_number "13"; FPKM "6.8147483305"; frac
"1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov
"0.435537";
+chr13 Cufflinks exon 9570296 9570360 1000 + . gene_id "Dip2c"; transcript_id
"Dip2c"; exon_number "14"; FPKM "6.8147483305"; frac
"1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov
"0.435537";
+chr13 Cufflinks exon 9574380 9574473 1000 + . gene_id "Dip2c"; transcript_id
"Dip2c"; exon_number "15"; FPKM "6.8147483305"; frac
"1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov
"0.435537";
+chr13 Cufflinks exon 9574608 9574727 1000 + . gene_id "Dip2c"; transcript_id
"Dip2c"; exon_number "16"; FPKM "6.8147483305"; frac
"1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov
"0.435537";
+chr13 Cufflinks exon 9576050 9576164 1000 + . gene_id "Dip2c"; transcript_id
"Dip2c"; exon_number "17"; FPKM "6.8147483305"; frac
"1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov
"0.435537";
+chr13 Cufflinks exon 9583251 9583267 1000 + . gene_id "Dip2c"; transcript_id
"Dip2c"; exon_number "18"; FPKM "6.8147483305"; frac
"1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov
"0.435537";
+chr13 Cufflinks exon 9591990 9592004 1000 + . gene_id "Dip2c"; transcript_id
"Dip2c"; exon_number "19"; FPKM "6.8147483305"; frac
"1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov
"0.435537";
+chr13 Cufflinks exon 9600632 9600742 1000 + . gene_id "Dip2c"; transcript_id
"Dip2c"; exon_number "20"; FPKM "6.8147483305"; frac
"1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov
"0.435537";
+chr13 Cufflinks exon 9603735 9603871 1000 + . gene_id "Dip2c"; transcript_id
"Dip2c"; exon_number "21"; FPKM "6.8147483305"; frac
"1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov
"0.435537";
+chr13 Cufflinks exon 9605569 9605777 1000 + . gene_id "Dip2c"; transcript_id
"Dip2c"; exon_number "22"; FPKM "6.8147483305"; frac
"1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov
"0.435537";
+chr13 Cufflinks exon 9608190 9608304 1000 + . gene_id "Dip2c"; transcript_id
"Dip2c"; exon_number "23"; FPKM "6.8147483305"; frac
"1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov
"0.435537";
+chr13 Cufflinks exon 9609943 9610144 1000 + . gene_id "Dip2c"; transcript_id
"Dip2c"; exon_number "24"; FPKM "6.8147483305"; frac
"1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov
"0.435537";
+chr13 Cufflinks exon 9613593 9613702 1000 + . gene_id "Dip2c"; transcript_id
"Dip2c"; exon_number "25"; FPKM "6.8147483305"; frac
"1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov
"0.435537";
+chr13 Cufflinks exon 9614991 9615071 1000 + . gene_id "Dip2c"; transcript_id
"Dip2c"; exon_number "26"; FPKM "6.8147483305"; frac
"1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov
"0.435537";
+chr13 Cufflinks exon 9621125 9621248 1000 + . gene_id "Dip2c"; transcript_id
"Dip2c"; exon_number "27"; FPKM "6.8147483305"; frac
"1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov
"0.435537";
+chr13 Cufflinks exon 9621828 9621949 1000 + . gene_id "Dip2c"; transcript_id
"Dip2c"; exon_number "28"; FPKM "6.8147483305"; frac
"1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov
"0.435537";
+chr13 Cufflinks exon 9623003 9623114 1000 + . gene_id "Dip2c"; transcript_id
"Dip2c"; exon_number "29"; FPKM "6.8147483305"; frac
"1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov
"0.435537";
+chr13 Cufflinks exon 9623204 9623313 1000 + . gene_id "Dip2c"; transcript_id
"Dip2c"; exon_number "30"; FPKM "6.8147483305"; frac
"1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov
"0.435537";
+chr13 Cufflinks exon 9627219 9627349 1000 + . gene_id "Dip2c"; transcript_id
"Dip2c"; exon_number "31"; FPKM "6.8147483305"; frac
"1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov
"0.435537";
+chr13 Cufflinks exon 9633968 9634136 1000 + . gene_id "Dip2c"; transcript_id
"Dip2c"; exon_number "32"; FPKM "6.8147483305"; frac
"1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov
"0.435537";
+chr13 Cufflinks exon 9636341 9636511 1000 + . gene_id "Dip2c"; transcript_id
"Dip2c"; exon_number "33"; FPKM "6.8147483305"; frac
"1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov
"0.435537";
+chr13 Cufflinks exon 9646225 9646286 1000 + . gene_id "Dip2c"; transcript_id
"Dip2c"; exon_number "34"; FPKM "6.8147483305"; frac
"1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov
"0.435537";
+chr13 Cufflinks exon 9653849 9653906 1000 + . gene_id "Dip2c"; transcript_id
"Dip2c"; exon_number "35"; FPKM "6.8147483305"; frac
"1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov
"0.435537";
+chr13 Cufflinks exon 9655883 9655957 1000 + . gene_id "Dip2c"; transcript_id
"Dip2c"; exon_number "36"; FPKM "6.8147483305"; frac
"1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov
"0.435537";
+chr13 Cufflinks exon 9658491 9658665 1000 + . gene_id "Dip2c"; transcript_id
"Dip2c"; exon_number "37"; FPKM "6.8147483305"; frac
"1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov
"0.435537";
+chr13 Cufflinks exon 9661383 9661506 1000 + . gene_id "Dip2c"; transcript_id
"Dip2c"; exon_number "38"; FPKM "6.8147483305"; frac
"1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov
"0.435537";
+chr13 Cufflinks exon 9665024 9668171 1000 + . gene_id "Dip2c"; transcript_id
"Dip2c"; exon_number "39"; FPKM "6.8147483305"; frac
"1.000000"; conf_lo "5.616832"; conf_hi "8.012665"; cov
"0.435537";
+chr13 Cufflinks transcript 9684082 9764454 1000 - . gene_id "Zmynd11";
transcript_id "Zmynd11"; FPKM "45.8208152687"; frac
"1.000000"; conf_lo "41.333868"; conf_hi "50.307762"; cov
"2.928453";
+chr13 Cufflinks exon 9684082 9686230 1000 - . gene_id "Zmynd11"; transcript_id
"Zmynd11"; exon_number "1"; FPKM "45.8208152687"; frac
"1.000000"; conf_lo "41.333868"; conf_hi "50.307762"; cov
"2.928453";
+chr13 Cufflinks exon 9688309 9688494 1000 - . gene_id "Zmynd11"; transcript_id
"Zmynd11"; exon_number "2"; FPKM "45.8208152687"; frac
"1.000000"; conf_lo "41.333868"; conf_hi "50.307762"; cov
"2.928453";
+chr13 Cufflinks exon 9688698 9688970 1000 - . gene_id "Zmynd11"; transcript_id
"Zmynd11"; exon_number "3"; FPKM "45.8208152687"; frac
"1.000000"; conf_lo "41.333868"; conf_hi "50.307762"; cov
"2.928453";
+chr13 Cufflinks exon 9689692 9689760 1000 - . gene_id "Zmynd11"; transcript_id
"Zmynd11"; exon_number "4"; FPKM "45.8208152687"; frac
"1.000000"; conf_lo "41.333868"; conf_hi "50.307762"; cov
"2.928453";
+chr13 Cufflinks exon 9690149 9690356 1000 - . gene_id "Zmynd11"; transcript_id
"Zmynd11"; exon_number "5"; FPKM "45.8208152687"; frac
"1.000000"; conf_lo "41.333868"; conf_hi "50.307762"; cov
"2.928453";
+chr13 Cufflinks exon 9692676 9692794 1000 - . gene_id "Zmynd11"; transcript_id
"Zmynd11"; exon_number "6"; FPKM "45.8208152687"; frac
"1.000000"; conf_lo "41.333868"; conf_hi "50.307762"; cov
"2.928453";
+chr13 Cufflinks exon 9693515 9693592 1000 - . gene_id "Zmynd11"; transcript_id
"Zmynd11"; exon_number "7"; FPKM "45.8208152687"; frac
"1.000000"; conf_lo "41.333868"; conf_hi "50.307762"; cov
"2.928453";
+chr13 Cufflinks exon 9694375 9694430 1000 - . gene_id "Zmynd11"; transcript_id
"Zmynd11"; exon_number "8"; FPKM "45.8208152687"; frac
"1.000000"; conf_lo "41.333868"; conf_hi "50.307762"; cov
"2.928453";
+chr13 Cufflinks exon 9694985 9695072 1000 - . gene_id "Zmynd11"; transcript_id
"Zmynd11"; exon_number "9"; FPKM "45.8208152687"; frac
"1.000000"; conf_lo "41.333868"; conf_hi "50.307762"; cov
"2.928453";
+chr13 Cufflinks exon 9696890 9696982 1000 - . gene_id "Zmynd11"; transcript_id
"Zmynd11"; exon_number "10"; FPKM "45.8208152687"; frac
"1.000000"; conf_lo "41.333868"; conf_hi "50.307762"; cov
"2.928453";
+chr13 Cufflinks exon 9697874 9697951 1000 - . gene_id "Zmynd11"; transcript_id
"Zmynd11"; exon_number "11"; FPKM "45.8208152687"; frac
"1.000000"; conf_lo "41.333868"; conf_hi "50.307762"; cov
"2.928453";
+chr13 Cufflinks exon 9720019 9720178 1000 - . gene_id "Zmynd11"; transcript_id
"Zmynd11"; exon_number "12"; FPKM "45.8208152687"; frac
"1.000000"; conf_lo "41.333868"; conf_hi "50.307762"; cov
"2.928453";
+chr13 Cufflinks exon 9734578 9734712 1000 - . gene_id "Zmynd11"; transcript_id
"Zmynd11"; exon_number "13"; FPKM "45.8208152687"; frac
"1.000000"; conf_lo "41.333868"; conf_hi "50.307762"; cov
"2.928453";
+chr13 Cufflinks exon 9764301 9764454 1000 - . gene_id "Zmynd11"; transcript_id
"Zmynd11"; exon_number "14"; FPKM "45.8208152687"; frac
"1.000000"; conf_lo "41.333868"; conf_hi "50.307762"; cov
"2.928453";
+chr13 Cufflinks transcript 9875859 10360049 1000 - . gene_id "Chrm3";
transcript_id "Chrm3"; FPKM "1.0668249949"; frac "1.000000";
conf_lo "0.312466"; conf_hi "1.821184"; cov "0.068182";
+chr13 Cufflinks exon 9875859 9878263 1000 - . gene_id "Chrm3"; transcript_id
"Chrm3"; exon_number "1"; FPKM "1.0668249949"; frac
"1.000000"; conf_lo "0.312466"; conf_hi "1.821184"; cov
"0.068182";
+chr13 Cufflinks exon 10027699 10027745 1000 - . gene_id "Chrm3"; transcript_id
"Chrm3"; exon_number "2"; FPKM "1.0668249949"; frac
"1.000000"; conf_lo "0.312466"; conf_hi "1.821184"; cov
"0.068182";
+chr13 Cufflinks exon 10121473 10121535 1000 - . gene_id "Chrm3"; transcript_id
"Chrm3"; exon_number "3"; FPKM "1.0668249949"; frac
"1.000000"; conf_lo "0.312466"; conf_hi "1.821184"; cov
"0.068182";
+chr13 Cufflinks exon 10223891 10224003 1000 - . gene_id "Chrm3"; transcript_id
"Chrm3"; exon_number "4"; FPKM "1.0668249949"; frac
"1.000000"; conf_lo "0.312466"; conf_hi "1.821184"; cov
"0.068182";
+chr13 Cufflinks exon 10359510 10360049 1000 - . gene_id "Chrm3"; transcript_id
"Chrm3"; exon_number "5"; FPKM "1.0668249949"; frac
"1.000000"; conf_lo "0.312466"; conf_hi "1.821184"; cov
"0.068182";
+chr13 Cufflinks transcript 11645370 12199212 1000 - . gene_id "Ryr2";
transcript_id "Ryr2"; FPKM "2.6886045730"; frac "1.000000";
conf_lo "2.168770"; conf_hi "3.208439"; cov "0.171831";
+chr13 Cufflinks exon 11645370 11646878 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "1"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11647698 11647749 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "2"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11648865 11648965 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "3"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11650314 11650378 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "4"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11652791 11652947 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "5"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11659115 11659249 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "6"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11660739 11660885 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "7"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11664513 11664573 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "8"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11670047 11670180 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "9"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11676403 11676445 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "10"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11677675 11677805 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "11"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11679483 11679704 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "12"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11680409 11680495 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "13"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11683492 11683639 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "14"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11685360 11685424 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "15"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11686949 11688246 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "16"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11689338 11689419 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "17"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11690773 11690877 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "18"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11694026 11694154 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "19"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11695952 11696040 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "20"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11697423 11697503 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "21"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11710874 11710947 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "22"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11711737 11711813 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "23"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11713582 11713661 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "24"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11715169 11715268 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "25"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11727792 11727845 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "26"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11730699 11730750 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "27"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11732541 11732644 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "28"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11736071 11736167 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "29"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11738760 11738872 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "30"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11739969 11740004 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "31"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11741997 11742131 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "32"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11746633 11746692 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "33"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11747885 11748055 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "34"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11749300 11749392 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "35"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11751217 11751304 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "36"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11752368 11752608 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "37"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11754333 11754653 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "38"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11758148 11758278 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "39"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11759346 11759427 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "40"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11761080 11761318 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "41"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11762196 11762256 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "42"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11768465 11768514 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "43"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11773233 11773354 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "44"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11776729 11776793 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "45"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11779210 11779325 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "46"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11780157 11780280 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "47"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11782559 11782634 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "48"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11784906 11784983 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "49"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11792515 11792652 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "50"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11793046 11793135 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "51"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11795764 11795842 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "52"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11797902 11798065 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "53"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11798849 11798989 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "54"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11800049 11800139 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "55"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11800289 11800509 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "56"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11802184 11802353 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "57"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11804402 11804522 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "58"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11806784 11806889 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "59"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11809208 11809394 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "60"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11810637 11810772 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "61"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11814018 11814121 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "62"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11814998 11815130 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "63"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11816530 11816644 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "64"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11819124 11819397 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "65"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11822610 11822753 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "66"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11823913 11824018 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "67"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11827738 11827938 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "68"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11829989 11830787 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "69"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11834121 11834347 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "70"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11837445 11837531 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "71"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11837864 11838026 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "72"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11839755 11839915 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "73"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11841703 11841817 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "74"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11842956 11843308 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "75"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11844463 11844671 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "76"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11851938 11852112 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "77"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11853494 11853702 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "78"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11862119 11862266 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "79"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11864687 11864846 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "80"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11871452 11871535 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "81"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11877305 11877408 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "82"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11882526 11882630 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "83"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11884936 11885152 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "84"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11886809 11887001 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "85"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11891949 11892190 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "86"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11893405 11893538 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "87"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11894074 11894192 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "88"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11903150 11903245 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "89"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11916541 11916676 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "90"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11919801 11919984 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "91"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11921824 11921945 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "92"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11926191 11926355 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "93"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11943325 11943481 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "94"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11945383 11945457 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "95"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11960384 11960480 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "96"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11961384 11961483 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "97"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11971742 11971854 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "98"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11975312 11975390 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "99"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11977731 11977805 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "100"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11983101 11983115 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "101"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 11995485 11995505 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "102"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 12010578 12010682 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "103"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 12038150 12038269 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "104"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks exon 12198666 12199212 1000 - . gene_id "Ryr2"; transcript_id
"Ryr2"; exon_number "105"; FPKM "2.6886045730"; frac
"1.000000"; conf_lo "2.168770"; conf_hi "3.208439"; cov
"0.171831";
+chr13 Cufflinks transcript 12279086 12350267 1000 - . gene_id "Mtr";
transcript_id "Mtr"; FPKM "0.2064822571"; frac "1.000000";
conf_lo "0.000000"; conf_hi "0.498492"; cov "0.013196";
+chr13 Cufflinks exon 12279086 12279358 1000 - . gene_id "Mtr"; transcript_id
"Mtr"; exon_number "1"; FPKM "0.2064822571"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov
"0.013196";
+chr13 Cufflinks exon 12280308 12280420 1000 - . gene_id "Mtr"; transcript_id
"Mtr"; exon_number "2"; FPKM "0.2064822571"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov
"0.013196";
+chr13 Cufflinks exon 12281614 12281806 1000 - . gene_id "Mtr"; transcript_id
"Mtr"; exon_number "3"; FPKM "0.2064822571"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov
"0.013196";
+chr13 Cufflinks exon 12282471 12282671 1000 - . gene_id "Mtr"; transcript_id
"Mtr"; exon_number "4"; FPKM "0.2064822571"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov
"0.013196";
+chr13 Cufflinks exon 12285881 12286077 1000 - . gene_id "Mtr"; transcript_id
"Mtr"; exon_number "5"; FPKM "0.2064822571"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov
"0.013196";
+chr13 Cufflinks exon 12287505 12287660 1000 - . gene_id "Mtr"; transcript_id
"Mtr"; exon_number "6"; FPKM "0.2064822571"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov
"0.013196";
+chr13 Cufflinks exon 12290180 12290255 1000 - . gene_id "Mtr"; transcript_id
"Mtr"; exon_number "7"; FPKM "0.2064822571"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov
"0.013196";
+chr13 Cufflinks exon 12291313 12291411 1000 - . gene_id "Mtr"; transcript_id
"Mtr"; exon_number "8"; FPKM "0.2064822571"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov
"0.013196";
+chr13 Cufflinks exon 12292464 12292545 1000 - . gene_id "Mtr"; transcript_id
"Mtr"; exon_number "9"; FPKM "0.2064822571"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov
"0.013196";
+chr13 Cufflinks exon 12297010 12297130 1000 - . gene_id "Mtr"; transcript_id
"Mtr"; exon_number "10"; FPKM "0.2064822571"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov
"0.013196";
+chr13 Cufflinks exon 12297557 12297624 1000 - . gene_id "Mtr"; transcript_id
"Mtr"; exon_number "11"; FPKM "0.2064822571"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov
"0.013196";
+chr13 Cufflinks exon 12304655 12304755 1000 - . gene_id "Mtr"; transcript_id
"Mtr"; exon_number "12"; FPKM "0.2064822571"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov
"0.013196";
+chr13 Cufflinks exon 12304938 12305045 1000 - . gene_id "Mtr"; transcript_id
"Mtr"; exon_number "13"; FPKM "0.2064822571"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov
"0.013196";
+chr13 Cufflinks exon 12307680 12307832 1000 - . gene_id "Mtr"; transcript_id
"Mtr"; exon_number "14"; FPKM "0.2064822571"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov
"0.013196";
+chr13 Cufflinks exon 12309077 12309166 1000 - . gene_id "Mtr"; transcript_id
"Mtr"; exon_number "15"; FPKM "0.2064822571"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov
"0.013196";
+chr13 Cufflinks exon 12313689 12313829 1000 - . gene_id "Mtr"; transcript_id
"Mtr"; exon_number "16"; FPKM "0.2064822571"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov
"0.013196";
+chr13 Cufflinks exon 12314422 12314538 1000 - . gene_id "Mtr"; transcript_id
"Mtr"; exon_number "17"; FPKM "0.2064822571"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov
"0.013196";
+chr13 Cufflinks exon 12317729 12317908 1000 - . gene_id "Mtr"; transcript_id
"Mtr"; exon_number "18"; FPKM "0.2064822571"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov
"0.013196";
+chr13 Cufflinks exon 12319951 12320136 1000 - . gene_id "Mtr"; transcript_id
"Mtr"; exon_number "19"; FPKM "0.2064822571"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov
"0.013196";
+chr13 Cufflinks exon 12323212 12323352 1000 - . gene_id "Mtr"; transcript_id
"Mtr"; exon_number "20"; FPKM "0.2064822571"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov
"0.013196";
+chr13 Cufflinks exon 12325169 12325281 1000 - . gene_id "Mtr"; transcript_id
"Mtr"; exon_number "21"; FPKM "0.2064822571"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov
"0.013196";
+chr13 Cufflinks exon 12327724 12327803 1000 - . gene_id "Mtr"; transcript_id
"Mtr"; exon_number "22"; FPKM "0.2064822571"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov
"0.013196";
+chr13 Cufflinks exon 12330248 12330315 1000 - . gene_id "Mtr"; transcript_id
"Mtr"; exon_number "23"; FPKM "0.2064822571"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov
"0.013196";
+chr13 Cufflinks exon 12331916 12331977 1000 - . gene_id "Mtr"; transcript_id
"Mtr"; exon_number "24"; FPKM "0.2064822571"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov
"0.013196";
+chr13 Cufflinks exon 12333832 12333932 1000 - . gene_id "Mtr"; transcript_id
"Mtr"; exon_number "25"; FPKM "0.2064822571"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov
"0.013196";
+chr13 Cufflinks exon 12336202 12336296 1000 - . gene_id "Mtr"; transcript_id
"Mtr"; exon_number "26"; FPKM "0.2064822571"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov
"0.013196";
+chr13 Cufflinks exon 12336822 12336884 1000 - . gene_id "Mtr"; transcript_id
"Mtr"; exon_number "27"; FPKM "0.2064822571"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov
"0.013196";
+chr13 Cufflinks exon 12339586 12339692 1000 - . gene_id "Mtr"; transcript_id
"Mtr"; exon_number "28"; FPKM "0.2064822571"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov
"0.013196";
+chr13 Cufflinks exon 12340160 12340252 1000 - . gene_id "Mtr"; transcript_id
"Mtr"; exon_number "29"; FPKM "0.2064822571"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov
"0.013196";
+chr13 Cufflinks exon 12342112 12342181 1000 - . gene_id "Mtr"; transcript_id
"Mtr"; exon_number "30"; FPKM "0.2064822571"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov
"0.013196";
+chr13 Cufflinks exon 12342869 12342958 1000 - . gene_id "Mtr"; transcript_id
"Mtr"; exon_number "31"; FPKM "0.2064822571"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov
"0.013196";
+chr13 Cufflinks exon 12346031 12346245 1000 - . gene_id "Mtr"; transcript_id
"Mtr"; exon_number "32"; FPKM "0.2064822571"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov
"0.013196";
+chr13 Cufflinks exon 12350129 12350267 1000 - . gene_id "Mtr"; transcript_id
"Mtr"; exon_number "33"; FPKM "0.2064822571"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "0.498492"; cov
"0.013196";
+chr13 Cufflinks transcript 12361694 12432999 1000 - . gene_id "Actn2";
transcript_id "Actn2"; FPKM "3.6809752507"; frac "1.000000";
conf_lo "2.237178"; conf_hi "5.124773"; cov "0.235255";
+chr13 Cufflinks exon 12361694 12361919 1000 - . gene_id "Actn2"; transcript_id
"Actn2"; exon_number "1"; FPKM "3.6809752507"; frac
"1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov
"0.235255";
+chr13 Cufflinks exon 12363045 12363203 1000 - . gene_id "Actn2"; transcript_id
"Actn2"; exon_number "2"; FPKM "3.6809752507"; frac
"1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov
"0.235255";
+chr13 Cufflinks exon 12364966 12365031 1000 - . gene_id "Actn2"; transcript_id
"Actn2"; exon_number "3"; FPKM "3.6809752507"; frac
"1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov
"0.235255";
+chr13 Cufflinks exon 12367345 12367491 1000 - . gene_id "Actn2"; transcript_id
"Actn2"; exon_number "4"; FPKM "3.6809752507"; frac
"1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov
"0.235255";
+chr13 Cufflinks exon 12368630 12368809 1000 - . gene_id "Actn2"; transcript_id
"Actn2"; exon_number "5"; FPKM "3.6809752507"; frac
"1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov
"0.235255";
+chr13 Cufflinks exon 12369666 12369800 1000 - . gene_id "Actn2"; transcript_id
"Actn2"; exon_number "6"; FPKM "3.6809752507"; frac
"1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov
"0.235255";
+chr13 Cufflinks exon 12371061 12371243 1000 - . gene_id "Actn2"; transcript_id
"Actn2"; exon_number "7"; FPKM "3.6809752507"; frac
"1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov
"0.235255";
+chr13 Cufflinks exon 12372696 12372836 1000 - . gene_id "Actn2"; transcript_id
"Actn2"; exon_number "8"; FPKM "3.6809752507"; frac
"1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov
"0.235255";
+chr13 Cufflinks exon 12374782 12374890 1000 - . gene_id "Actn2"; transcript_id
"Actn2"; exon_number "9"; FPKM "3.6809752507"; frac
"1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov
"0.235255";
+chr13 Cufflinks exon 12380774 12380924 1000 - . gene_id "Actn2"; transcript_id
"Actn2"; exon_number "10"; FPKM "3.6809752507"; frac
"1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov
"0.235255";
+chr13 Cufflinks exon 12382941 12383088 1000 - . gene_id "Actn2"; transcript_id
"Actn2"; exon_number "11"; FPKM "3.6809752507"; frac
"1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov
"0.235255";
+chr13 Cufflinks exon 12383927 12384157 1000 - . gene_id "Actn2"; transcript_id
"Actn2"; exon_number "12"; FPKM "3.6809752507"; frac
"1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov
"0.235255";
+chr13 Cufflinks exon 12386577 12386669 1000 - . gene_id "Actn2"; transcript_id
"Actn2"; exon_number "13"; FPKM "3.6809752507"; frac
"1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov
"0.235255";
+chr13 Cufflinks exon 12388742 12388827 1000 - . gene_id "Actn2"; transcript_id
"Actn2"; exon_number "14"; FPKM "3.6809752507"; frac
"1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov
"0.235255";
+chr13 Cufflinks exon 12393202 12393283 1000 - . gene_id "Actn2"; transcript_id
"Actn2"; exon_number "15"; FPKM "3.6809752507"; frac
"1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov
"0.235255";
+chr13 Cufflinks exon 12396581 12396659 1000 - . gene_id "Actn2"; transcript_id
"Actn2"; exon_number "16"; FPKM "3.6809752507"; frac
"1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov
"0.235255";
+chr13 Cufflinks exon 12398541 12398628 1000 - . gene_id "Actn2"; transcript_id
"Actn2"; exon_number "17"; FPKM "3.6809752507"; frac
"1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov
"0.235255";
+chr13 Cufflinks exon 12401167 12401253 1000 - . gene_id "Actn2"; transcript_id
"Actn2"; exon_number "18"; FPKM "3.6809752507"; frac
"1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov
"0.235255";
+chr13 Cufflinks exon 12401862 12401981 1000 - . gene_id "Actn2"; transcript_id
"Actn2"; exon_number "19"; FPKM "3.6809752507"; frac
"1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov
"0.235255";
+chr13 Cufflinks exon 12403114 12403228 1000 - . gene_id "Actn2"; transcript_id
"Actn2"; exon_number "20"; FPKM "3.6809752507"; frac
"1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov
"0.235255";
+chr13 Cufflinks exon 12432642 12432999 1000 - . gene_id "Actn2"; transcript_id
"Actn2"; exon_number "21"; FPKM "3.6809752507"; frac
"1.000000"; conf_lo "2.237178"; conf_hi "5.124773"; cov
"0.235255";
+chr13 Cufflinks transcript 12487642 12531160 1000 + . gene_id "Heatr1";
transcript_id "Heatr1"; FPKM "1.4963259669"; frac
"1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov
"0.095632";
+chr13 Cufflinks exon 12487642 12487737 1000 + . gene_id "Heatr1"; transcript_id
"Heatr1"; exon_number "1"; FPKM "1.4963259669"; frac
"1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov
"0.095632";
+chr13 Cufflinks exon 12488007 12488180 1000 + . gene_id "Heatr1"; transcript_id
"Heatr1"; exon_number "2"; FPKM "1.4963259669"; frac
"1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov
"0.095632";
+chr13 Cufflinks exon 12488689 12488905 1000 + . gene_id "Heatr1"; transcript_id
"Heatr1"; exon_number "3"; FPKM "1.4963259669"; frac
"1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov
"0.095632";
+chr13 Cufflinks exon 12491170 12491311 1000 + . gene_id "Heatr1"; transcript_id
"Heatr1"; exon_number "4"; FPKM "1.4963259669"; frac
"1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov
"0.095632";
+chr13 Cufflinks exon 12493317 12493418 1000 + . gene_id "Heatr1"; transcript_id
"Heatr1"; exon_number "5"; FPKM "1.4963259669"; frac
"1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov
"0.095632";
+chr13 Cufflinks exon 12493717 12493857 1000 + . gene_id "Heatr1"; transcript_id
"Heatr1"; exon_number "6"; FPKM "1.4963259669"; frac
"1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov
"0.095632";
+chr13 Cufflinks exon 12494981 12495192 1000 + . gene_id "Heatr1"; transcript_id
"Heatr1"; exon_number "7"; FPKM "1.4963259669"; frac
"1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov
"0.095632";
+chr13 Cufflinks exon 12495412 12495545 1000 + . gene_id "Heatr1"; transcript_id
"Heatr1"; exon_number "8"; FPKM "1.4963259669"; frac
"1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov
"0.095632";
+chr13 Cufflinks exon 12497155 12497257 1000 + . gene_id "Heatr1"; transcript_id
"Heatr1"; exon_number "9"; FPKM "1.4963259669"; frac
"1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov
"0.095632";
+chr13 Cufflinks exon 12498290 12498400 1000 + . gene_id "Heatr1"; transcript_id
"Heatr1"; exon_number "10"; FPKM "1.4963259669"; frac
"1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov
"0.095632";
+chr13 Cufflinks exon 12498792 12498909 1000 + . gene_id "Heatr1"; transcript_id
"Heatr1"; exon_number "11"; FPKM "1.4963259669"; frac
"1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov
"0.095632";
+chr13 Cufflinks exon 12499784 12499891 1000 + . gene_id "Heatr1"; transcript_id
"Heatr1"; exon_number "12"; FPKM "1.4963259669"; frac
"1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov
"0.095632";
+chr13 Cufflinks exon 12500921 12501016 1000 + . gene_id "Heatr1"; transcript_id
"Heatr1"; exon_number "13"; FPKM "1.4963259669"; frac
"1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov
"0.095632";
+chr13 Cufflinks exon 12501476 12501564 1000 + . gene_id "Heatr1"; transcript_id
"Heatr1"; exon_number "14"; FPKM "1.4963259669"; frac
"1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov
"0.095632";
+chr13 Cufflinks exon 12502663 12502874 1000 + . gene_id "Heatr1"; transcript_id
"Heatr1"; exon_number "15"; FPKM "1.4963259669"; frac
"1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov
"0.095632";
+chr13 Cufflinks exon 12503487 12503608 1000 + . gene_id "Heatr1"; transcript_id
"Heatr1"; exon_number "16"; FPKM "1.4963259669"; frac
"1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov
"0.095632";
+chr13 Cufflinks exon 12504312 12504503 1000 + . gene_id "Heatr1"; transcript_id
"Heatr1"; exon_number "17"; FPKM "1.4963259669"; frac
"1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov
"0.095632";
+chr13 Cufflinks exon 12505492 12505675 1000 + . gene_id "Heatr1"; transcript_id
"Heatr1"; exon_number "18"; FPKM "1.4963259669"; frac
"1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov
"0.095632";
+chr13 Cufflinks exon 12505779 12505915 1000 + . gene_id "Heatr1"; transcript_id
"Heatr1"; exon_number "19"; FPKM "1.4963259669"; frac
"1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov
"0.095632";
+chr13 Cufflinks exon 12506640 12506832 1000 + . gene_id "Heatr1"; transcript_id
"Heatr1"; exon_number "20"; FPKM "1.4963259669"; frac
"1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov
"0.095632";
+chr13 Cufflinks exon 12507684 12507853 1000 + . gene_id "Heatr1"; transcript_id
"Heatr1"; exon_number "21"; FPKM "1.4963259669"; frac
"1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov
"0.095632";
+chr13 Cufflinks exon 12508218 12508376 1000 + . gene_id "Heatr1"; transcript_id
"Heatr1"; exon_number "22"; FPKM "1.4963259669"; frac
"1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov
"0.095632";
+chr13 Cufflinks exon 12509727 12509969 1000 + . gene_id "Heatr1"; transcript_id
"Heatr1"; exon_number "23"; FPKM "1.4963259669"; frac
"1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov
"0.095632";
+chr13 Cufflinks exon 12510365 12510496 1000 + . gene_id "Heatr1"; transcript_id
"Heatr1"; exon_number "24"; FPKM "1.4963259669"; frac
"1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov
"0.095632";
+chr13 Cufflinks exon 12513309 12513412 1000 + . gene_id "Heatr1"; transcript_id
"Heatr1"; exon_number "25"; FPKM "1.4963259669"; frac
"1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov
"0.095632";
+chr13 Cufflinks exon 12513545 12513688 1000 + . gene_id "Heatr1"; transcript_id
"Heatr1"; exon_number "26"; FPKM "1.4963259669"; frac
"1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov
"0.095632";
+chr13 Cufflinks exon 12514308 12514426 1000 + . gene_id "Heatr1"; transcript_id
"Heatr1"; exon_number "27"; FPKM "1.4963259669"; frac
"1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov
"0.095632";
+chr13 Cufflinks exon 12514508 12514629 1000 + . gene_id "Heatr1"; transcript_id
"Heatr1"; exon_number "28"; FPKM "1.4963259669"; frac
"1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov
"0.095632";
+chr13 Cufflinks exon 12515901 12516029 1000 + . gene_id "Heatr1"; transcript_id
"Heatr1"; exon_number "29"; FPKM "1.4963259669"; frac
"1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov
"0.095632";
+chr13 Cufflinks exon 12516887 12517117 1000 + . gene_id "Heatr1"; transcript_id
"Heatr1"; exon_number "30"; FPKM "1.4963259669"; frac
"1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov
"0.095632";
+chr13 Cufflinks exon 12518421 12518547 1000 + . gene_id "Heatr1"; transcript_id
"Heatr1"; exon_number "31"; FPKM "1.4963259669"; frac
"1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov
"0.095632";
+chr13 Cufflinks exon 12519029 12519189 1000 + . gene_id "Heatr1"; transcript_id
"Heatr1"; exon_number "32"; FPKM "1.4963259669"; frac
"1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov
"0.095632";
+chr13 Cufflinks exon 12522034 12522080 1000 + . gene_id "Heatr1"; transcript_id
"Heatr1"; exon_number "33"; FPKM "1.4963259669"; frac
"1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov
"0.095632";
+chr13 Cufflinks exon 12522408 12522531 1000 + . gene_id "Heatr1"; transcript_id
"Heatr1"; exon_number "34"; FPKM "1.4963259669"; frac
"1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov
"0.095632";
+chr13 Cufflinks exon 12523178 12523318 1000 + . gene_id "Heatr1"; transcript_id
"Heatr1"; exon_number "35"; FPKM "1.4963259669"; frac
"1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov
"0.095632";
+chr13 Cufflinks exon 12523947 12524239 1000 + . gene_id "Heatr1"; transcript_id
"Heatr1"; exon_number "36"; FPKM "1.4963259669"; frac
"1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov
"0.095632";
+chr13 Cufflinks exon 12524896 12525046 1000 + . gene_id "Heatr1"; transcript_id
"Heatr1"; exon_number "37"; FPKM "1.4963259669"; frac
"1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov
"0.095632";
+chr13 Cufflinks exon 12525879 12526037 1000 + . gene_id "Heatr1"; transcript_id
"Heatr1"; exon_number "38"; FPKM "1.4963259669"; frac
"1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov
"0.095632";
+chr13 Cufflinks exon 12526184 12526318 1000 + . gene_id "Heatr1"; transcript_id
"Heatr1"; exon_number "39"; FPKM "1.4963259669"; frac
"1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov
"0.095632";
+chr13 Cufflinks exon 12526454 12526558 1000 + . gene_id "Heatr1"; transcript_id
"Heatr1"; exon_number "40"; FPKM "1.4963259669"; frac
"1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov
"0.095632";
+chr13 Cufflinks exon 12526641 12526809 1000 + . gene_id "Heatr1"; transcript_id
"Heatr1"; exon_number "41"; FPKM "1.4963259669"; frac
"1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov
"0.095632";
+chr13 Cufflinks exon 12527314 12527468 1000 + . gene_id "Heatr1"; transcript_id
"Heatr1"; exon_number "42"; FPKM "1.4963259669"; frac
"1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov
"0.095632";
+chr13 Cufflinks exon 12527937 12528095 1000 + . gene_id "Heatr1"; transcript_id
"Heatr1"; exon_number "43"; FPKM "1.4963259669"; frac
"1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov
"0.095632";
+chr13 Cufflinks exon 12530101 12530209 1000 + . gene_id "Heatr1"; transcript_id
"Heatr1"; exon_number "44"; FPKM "1.4963259669"; frac
"1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov
"0.095632";
+chr13 Cufflinks exon 12530856 12531160 1000 + . gene_id "Heatr1"; transcript_id
"Heatr1"; exon_number "45"; FPKM "1.4963259669"; frac
"1.000000"; conf_lo "0.885453"; conf_hi "2.107198"; cov
"0.095632";
+chr13 Cufflinks transcript 12531686 12553757 1000 - . gene_id "Lgals8";
transcript_id "Lgals8"; FPKM "6.5640329997"; frac
"1.000000"; conf_lo "4.475113"; conf_hi "8.652953"; cov
"0.419514";
+chr13 Cufflinks exon 12531686 12533261 1000 - . gene_id "Lgals8"; transcript_id
"Lgals8"; exon_number "1"; FPKM "6.5640329997"; frac
"1.000000"; conf_lo "4.475113"; conf_hi "8.652953"; cov
"0.419514";
+chr13 Cufflinks exon 12539414 12539579 1000 - . gene_id "Lgals8"; transcript_id
"Lgals8"; exon_number "2"; FPKM "6.5640329997"; frac
"1.000000"; conf_lo "4.475113"; conf_hi "8.652953"; cov
"0.419514";
+chr13 Cufflinks exon 12540686 12540774 1000 - . gene_id "Lgals8"; transcript_id
"Lgals8"; exon_number "3"; FPKM "6.5640329997"; frac
"1.000000"; conf_lo "4.475113"; conf_hi "8.652953"; cov
"0.419514";
+chr13 Cufflinks exon 12543668 12543694 1000 - . gene_id "Lgals8"; transcript_id
"Lgals8"; exon_number "4"; FPKM "6.5640329997"; frac
"1.000000"; conf_lo "4.475113"; conf_hi "8.652953"; cov
"0.419514";
+chr13 Cufflinks exon 12544989 12545045 1000 - . gene_id "Lgals8"; transcript_id
"Lgals8"; exon_number "5"; FPKM "6.5640329997"; frac
"1.000000"; conf_lo "4.475113"; conf_hi "8.652953"; cov
"0.419514";
+chr13 Cufflinks exon 12545552 12545671 1000 - . gene_id "Lgals8"; transcript_id
"Lgals8"; exon_number "6"; FPKM "6.5640329997"; frac
"1.000000"; conf_lo "4.475113"; conf_hi "8.652953"; cov
"0.419514";
+chr13 Cufflinks exon 12547002 12547212 1000 - . gene_id "Lgals8"; transcript_id
"Lgals8"; exon_number "7"; FPKM "6.5640329997"; frac
"1.000000"; conf_lo "4.475113"; conf_hi "8.652953"; cov
"0.419514";
+chr13 Cufflinks exon 12548611 12548699 1000 - . gene_id "Lgals8"; transcript_id
"Lgals8"; exon_number "8"; FPKM "6.5640329997"; frac
"1.000000"; conf_lo "4.475113"; conf_hi "8.652953"; cov
"0.419514";
+chr13 Cufflinks exon 12551441 12551583 1000 - . gene_id "Lgals8"; transcript_id
"Lgals8"; exon_number "9"; FPKM "6.5640329997"; frac
"1.000000"; conf_lo "4.475113"; conf_hi "8.652953"; cov
"0.419514";
+chr13 Cufflinks exon 12553694 12553757 1000 - . gene_id "Lgals8"; transcript_id
"Lgals8"; exon_number "10"; FPKM "6.5640329997"; frac
"1.000000"; conf_lo "4.475113"; conf_hi "8.652953"; cov
"0.419514";
+chr13 Cufflinks transcript 12569175 12612715 1000 - . gene_id "Edaradd";
transcript_id "Edaradd"; FPKM "1.7587955787"; frac
"1.000000"; conf_lo "0.646436"; conf_hi "2.871156"; cov
"0.112406";
+chr13 Cufflinks exon 12569175 12570841 1000 - . gene_id "Edaradd";
transcript_id "Edaradd"; exon_number "1"; FPKM
"1.7587955787"; frac "1.000000"; conf_lo "0.646436"; conf_hi
"2.871156"; cov "0.112406";
+chr13 Cufflinks exon 12575867 12575912 1000 - . gene_id "Edaradd";
transcript_id "Edaradd"; exon_number "2"; FPKM
"1.7587955787"; frac "1.000000"; conf_lo "0.646436"; conf_hi
"2.871156"; cov "0.112406";
--- /dev/null
+++ b/test-data/gops_subtract_in1.gff
@@ -0,0 +1,500 @@
+chr13 Cufflinks transcript 3405463 3405542 1000 . . gene_id "CUFF.50189";
transcript_id "CUFF.50189.1"; FPKM "6.3668918357"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "17.963819"; cov
"0.406914";
+chr13 Cufflinks exon 3405463 3405542 1000 . . gene_id "CUFF.50189";
transcript_id "CUFF.50189.1"; exon_number "1"; FPKM
"6.3668918357"; frac "1.000000"; conf_lo "0.000000"; conf_hi
"17.963819"; cov "0.406914";
+chr13 Cufflinks transcript 3473337 3473372 1000 . . gene_id "CUFF.50191";
transcript_id "CUFF.50191.1"; FPKM "11.7350749444"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "35.205225"; cov
"0.750000";
+chr13 Cufflinks exon 3473337 3473372 1000 . . gene_id "CUFF.50191";
transcript_id "CUFF.50191.1"; exon_number "1"; FPKM
"11.7350749444"; frac "1.000000"; conf_lo "0.000000";
conf_hi "35.205225"; cov "0.750000";
+chr13 Cufflinks transcript 3490319 3490350 1000 . . gene_id "CUFF.50193";
transcript_id "CUFF.50193.1"; FPKM "39.6058779373"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "85.338807"; cov
"2.531250";
+chr13 Cufflinks exon 3490319 3490350 1000 . . gene_id "CUFF.50193";
transcript_id "CUFF.50193.1"; exon_number "1"; FPKM
"39.6058779373"; frac "1.000000"; conf_lo "0.000000";
conf_hi "85.338807"; cov "2.531250";
+chr13 Cufflinks transcript 3565855 3566203 1000 - . gene_id "CUFF.50195";
transcript_id "CUFF.50195.1"; FPKM "29.8710998584"; frac
"1.000000"; conf_lo "7.290671"; conf_hi "52.451529"; cov
"1.909091";
+chr13 Cufflinks exon 3565855 3565913 1000 - . gene_id "CUFF.50195";
transcript_id "CUFF.50195.1"; exon_number "1"; FPKM
"29.8710998584"; frac "1.000000"; conf_lo "7.290671";
conf_hi "52.451529"; cov "1.909091";
+chr13 Cufflinks exon 3566164 3566203 1000 - . gene_id "CUFF.50195";
transcript_id "CUFF.50195.1"; exon_number "2"; FPKM
"29.8710998584"; frac "1.000000"; conf_lo "7.290671";
conf_hi "52.451529"; cov "1.909091";
+chr13 Cufflinks transcript 3566475 3566560 1000 . . gene_id "CUFF.50197";
transcript_id "CUFF.50197.1"; FPKM "14.7370708604"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "31.753975"; cov
"0.941860";
+chr13 Cufflinks exon 3566475 3566560 1000 . . gene_id "CUFF.50197";
transcript_id "CUFF.50197.1"; exon_number "1"; FPKM
"14.7370708604"; frac "1.000000"; conf_lo "0.000000";
conf_hi "31.753975"; cov "0.941860";
+chr13 Cufflinks transcript 3566664 3566942 1000 . . gene_id "CUFF.50199";
transcript_id "CUFF.50199.1"; FPKM "31.7874813134"; frac
"1.000000"; conf_lo "17.911934"; conf_hi "45.663029"; cov
"2.031569";
+chr13 Cufflinks exon 3566664 3566942 1000 . . gene_id "CUFF.50199";
transcript_id "CUFF.50199.1"; exon_number "1"; FPKM
"31.7874813134"; frac "1.000000"; conf_lo "17.911934";
conf_hi "45.663029"; cov "2.031569";
+chr13 Cufflinks transcript 3568042 3568068 1000 . . gene_id "CUFF.50201";
transcript_id "CUFF.50201.1"; FPKM "31.2935331850"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov
"2.000000";
+chr13 Cufflinks exon 3568042 3568068 1000 . . gene_id "CUFF.50201";
transcript_id "CUFF.50201.1"; exon_number "1"; FPKM
"31.2935331850"; frac "1.000000"; conf_lo "0.000000";
conf_hi "75.549272"; cov "2.000000";
+chr13 Cufflinks transcript 3569564 3569626 1000 . . gene_id "CUFF.50203";
transcript_id "CUFF.50203.1"; FPKM "13.4115142222"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "32.378260"; cov
"0.857143";
+chr13 Cufflinks exon 3569564 3569626 1000 . . gene_id "CUFF.50203";
transcript_id "CUFF.50203.1"; exon_number "1"; FPKM
"13.4115142222"; frac "1.000000"; conf_lo "0.000000";
conf_hi "32.378260"; cov "0.857143";
+chr13 Cufflinks transcript 3594171 3594199 1000 . . gene_id "CUFF.50205";
transcript_id "CUFF.50205.1"; FPKM "29.1353584826"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "70.338978"; cov
"1.862069";
+chr13 Cufflinks exon 3594171 3594199 1000 . . gene_id "CUFF.50205";
transcript_id "CUFF.50205.1"; exon_number "1"; FPKM
"29.1353584826"; frac "1.000000"; conf_lo "0.000000";
conf_hi "70.338978"; cov "1.862069";
+chr13 Cufflinks transcript 3606116 3613028 1000 - . gene_id "CUFF.50207";
transcript_id "CUFF.50207.1"; FPKM "19.6171377865"; frac
"1.000000"; conf_lo "0.936995"; conf_hi "38.297281"; cov
"1.253750";
+chr13 Cufflinks exon 3606116 3606146 1000 - . gene_id "CUFF.50207";
transcript_id "CUFF.50207.1"; exon_number "1"; FPKM
"19.6171377865"; frac "1.000000"; conf_lo "0.936995";
conf_hi "38.297281"; cov "1.253750";
+chr13 Cufflinks exon 3612965 3613028 1000 - . gene_id "CUFF.50207";
transcript_id "CUFF.50207.1"; exon_number "2"; FPKM
"19.6171377865"; frac "1.000000"; conf_lo "0.936995";
conf_hi "38.297281"; cov "1.253750";
+chr13 Cufflinks transcript 3603507 3603533 1000 . . gene_id "CUFF.50209";
transcript_id "CUFF.50209.1"; FPKM "31.2935331850"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov
"2.000000";
+chr13 Cufflinks exon 3603507 3603533 1000 . . gene_id "CUFF.50209";
transcript_id "CUFF.50209.1"; exon_number "1"; FPKM
"31.2935331850"; frac "1.000000"; conf_lo "0.000000";
conf_hi "75.549272"; cov "2.000000";
+chr13 Cufflinks transcript 3604709 3604735 1000 . . gene_id "CUFF.50211";
transcript_id "CUFF.50211.1"; FPKM "15.6467665925"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov
"1.000000";
+chr13 Cufflinks exon 3604709 3604735 1000 . . gene_id "CUFF.50211";
transcript_id "CUFF.50211.1"; exon_number "1"; FPKM
"15.6467665925"; frac "1.000000"; conf_lo "0.000000";
conf_hi "46.940300"; cov "1.000000";
+chr13 Cufflinks transcript 3612524 3612550 1000 . . gene_id "CUFF.50213";
transcript_id "CUFF.50213.1"; FPKM "117.3321730764"; frac
"1.000000"; conf_lo "31.638086"; conf_hi "203.026260"; cov
"7.498813";
+chr13 Cufflinks exon 3612524 3612550 1000 . . gene_id "CUFF.50213";
transcript_id "CUFF.50213.1"; exon_number "1"; FPKM
"117.3321730764"; frac "1.000000"; conf_lo "31.638086";
conf_hi "203.026260"; cov "7.498813";
+chr13 Cufflinks transcript 3639250 3639290 1000 . . gene_id "CUFF.50215";
transcript_id "CUFF.50215.1"; FPKM "30.9119047316"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "66.605898"; cov
"1.975610";
+chr13 Cufflinks exon 3639250 3639290 1000 . . gene_id "CUFF.50215";
transcript_id "CUFF.50215.1"; exon_number "1"; FPKM
"30.9119047316"; frac "1.000000"; conf_lo "0.000000";
conf_hi "66.605898"; cov "1.975610";
+chr13 Cufflinks transcript 3649635 3649777 1000 . . gene_id "CUFF.50217";
transcript_id "CUFF.50217.1"; FPKM "14.7714230069"; frac
"1.000000"; conf_lo "1.559461"; conf_hi "27.983385"; cov
"0.944056";
+chr13 Cufflinks exon 3649635 3649777 1000 . . gene_id "CUFF.50217";
transcript_id "CUFF.50217.1"; exon_number "1"; FPKM
"14.7714230069"; frac "1.000000"; conf_lo "1.559461";
conf_hi "27.983385"; cov "0.944056";
+chr13 Cufflinks transcript 3649976 3650072 1000 . . gene_id "CUFF.50219";
transcript_id "CUFF.50219.1"; FPKM "26.1317132782"; frac
"1.000000"; conf_lo "4.795259"; conf_hi "47.468168"; cov
"1.670103";
+chr13 Cufflinks exon 3649976 3650072 1000 . . gene_id "CUFF.50219";
transcript_id "CUFF.50219.1"; exon_number "1"; FPKM
"26.1317132782"; frac "1.000000"; conf_lo "4.795259";
conf_hi "47.468168"; cov "1.670103";
+chr13 Cufflinks transcript 3650165 3650345 1000 . . gene_id "CUFF.50221";
transcript_id "CUFF.50221.1"; FPKM "16.3383363867"; frac
"1.000000"; conf_lo "3.987715"; conf_hi "28.688958"; cov
"1.044199";
+chr13 Cufflinks exon 3650165 3650345 1000 . . gene_id "CUFF.50221";
transcript_id "CUFF.50221.1"; exon_number "1"; FPKM
"16.3383363867"; frac "1.000000"; conf_lo "3.987715";
conf_hi "28.688958"; cov "1.044199";
+chr13 Cufflinks transcript 3650498 3651017 1000 . . gene_id "CUFF.50223";
transcript_id "CUFF.50223.1"; FPKM "38.9965567383"; frac
"1.000000"; conf_lo "27.739220"; conf_hi "50.253893"; cov
"2.492308";
+chr13 Cufflinks exon 3650498 3651017 1000 . . gene_id "CUFF.50223";
transcript_id "CUFF.50223.1"; exon_number "1"; FPKM
"38.9965567383"; frac "1.000000"; conf_lo "27.739220";
conf_hi "50.253893"; cov "2.492308";
+chr13 Cufflinks transcript 3652248 3652287 1000 . . gene_id "CUFF.50225";
transcript_id "CUFF.50225.1"; FPKM "21.1231348999"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "50.995759"; cov
"1.350000";
+chr13 Cufflinks exon 3652248 3652287 1000 . . gene_id "CUFF.50225";
transcript_id "CUFF.50225.1"; exon_number "1"; FPKM
"21.1231348999"; frac "1.000000"; conf_lo "0.000000";
conf_hi "50.995759"; cov "1.350000";
+chr13 Cufflinks transcript 3652708 3652757 1000 . . gene_id "CUFF.50227";
transcript_id "CUFF.50227.1"; FPKM "16.8985079199"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "40.796607"; cov
"1.080000";
+chr13 Cufflinks exon 3652708 3652757 1000 . . gene_id "CUFF.50227";
transcript_id "CUFF.50227.1"; exon_number "1"; FPKM
"16.8985079199"; frac "1.000000"; conf_lo "0.000000";
conf_hi "40.796607"; cov "1.080000";
+chr13 Cufflinks transcript 3652858 3652892 1000 . . gene_id "CUFF.50229";
transcript_id "CUFF.50229.1"; FPKM "24.1407255999"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "58.280867"; cov
"1.542857";
+chr13 Cufflinks exon 3652858 3652892 1000 . . gene_id "CUFF.50229";
transcript_id "CUFF.50229.1"; exon_number "1"; FPKM
"24.1407255999"; frac "1.000000"; conf_lo "0.000000";
conf_hi "58.280867"; cov "1.542857";
+chr13 Cufflinks transcript 3803155 3803189 1000 . . gene_id "CUFF.50231";
transcript_id "CUFF.50231.1"; FPKM "193.0684834367"; frac
"1.000000"; conf_lo "96.519912"; conf_hi "289.617054"; cov
"12.339194";
+chr13 Cufflinks exon 3803155 3803189 1000 . . gene_id "CUFF.50231";
transcript_id "CUFF.50231.1"; exon_number "1"; FPKM
"193.0684834367"; frac "1.000000"; conf_lo "96.519912";
conf_hi "289.617054"; cov "12.339194";
+chr13 Cufflinks transcript 3881504 3881530 1000 . . gene_id "CUFF.50233";
transcript_id "CUFF.50233.1"; FPKM "31.2935331850"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov
"2.000000";
+chr13 Cufflinks exon 3881504 3881530 1000 . . gene_id "CUFF.50233";
transcript_id "CUFF.50233.1"; exon_number "1"; FPKM
"31.2935331850"; frac "1.000000"; conf_lo "0.000000";
conf_hi "75.549272"; cov "2.000000";
+chr13 Cufflinks transcript 3881847 3881940 1000 . . gene_id "CUFF.50235";
transcript_id "CUFF.50235.1"; FPKM "11.2303742880"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "25.439173"; cov
"0.717744";
+chr13 Cufflinks exon 3881847 3881940 1000 . . gene_id "CUFF.50235";
transcript_id "CUFF.50235.1"; exon_number "1"; FPKM
"11.2303742880"; frac "1.000000"; conf_lo "0.000000";
conf_hi "25.439173"; cov "0.717744";
+chr13 Cufflinks transcript 3882719 3882811 1000 . . gene_id "CUFF.50237";
transcript_id "CUFF.50237.1"; FPKM "9.0852193118"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "21.933660"; cov
"0.580645";
+chr13 Cufflinks exon 3882719 3882811 1000 . . gene_id "CUFF.50237";
transcript_id "CUFF.50237.1"; exon_number "1"; FPKM
"9.0852193118"; frac "1.000000"; conf_lo "0.000000"; conf_hi
"21.933660"; cov "0.580645";
+chr13 Cufflinks transcript 3940646 3940672 1000 . . gene_id "CUFF.50239";
transcript_id "CUFF.50239.1"; FPKM "31.2935331850"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov
"2.000000";
+chr13 Cufflinks exon 3940646 3940672 1000 . . gene_id "CUFF.50239";
transcript_id "CUFF.50239.1"; exon_number "1"; FPKM
"31.2935331850"; frac "1.000000"; conf_lo "0.000000";
conf_hi "75.549272"; cov "2.000000";
+chr13 Cufflinks transcript 4135893 4135996 1000 . . gene_id "CUFF.50241";
transcript_id "CUFF.50241.1"; FPKM "8.1242826538"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "19.613753"; cov
"0.519231";
+chr13 Cufflinks exon 4135893 4135996 1000 . . gene_id "CUFF.50241";
transcript_id "CUFF.50241.1"; exon_number "1"; FPKM
"8.1242826538"; frac "1.000000"; conf_lo "0.000000"; conf_hi
"19.613753"; cov "0.519231";
+chr13 Cufflinks transcript 4246054 4246080 1000 . . gene_id "CUFF.50243";
transcript_id "CUFF.50243.1"; FPKM "31.2935331850"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov
"2.000000";
+chr13 Cufflinks exon 4246054 4246080 1000 . . gene_id "CUFF.50243";
transcript_id "CUFF.50243.1"; exon_number "1"; FPKM
"31.2935331850"; frac "1.000000"; conf_lo "0.000000";
conf_hi "75.549272"; cov "2.000000";
+chr13 Cufflinks transcript 4246081 4246107 1000 . . gene_id "CUFF.50245";
transcript_id "CUFF.50245.1"; FPKM "15.6467665925"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov
"1.000000";
+chr13 Cufflinks exon 4246081 4246107 1000 . . gene_id "CUFF.50245";
transcript_id "CUFF.50245.1"; exon_number "1"; FPKM
"15.6467665925"; frac "1.000000"; conf_lo "0.000000";
conf_hi "46.940300"; cov "1.000000";
+chr13 Cufflinks transcript 4247347 4247373 1000 . . gene_id "CUFF.50247";
transcript_id "CUFF.50247.1"; FPKM "15.6467665925"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov
"1.000000";
+chr13 Cufflinks exon 4247347 4247373 1000 . . gene_id "CUFF.50247";
transcript_id "CUFF.50247.1"; exon_number "1"; FPKM
"15.6467665925"; frac "1.000000"; conf_lo "0.000000";
conf_hi "46.940300"; cov "1.000000";
+chr13 Cufflinks transcript 4247393 4247419 1000 . . gene_id "CUFF.50249";
transcript_id "CUFF.50249.1"; FPKM "15.6467665925"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov
"1.000000";
+chr13 Cufflinks exon 4247393 4247419 1000 . . gene_id "CUFF.50249";
transcript_id "CUFF.50249.1"; exon_number "1"; FPKM
"15.6467665925"; frac "1.000000"; conf_lo "0.000000";
conf_hi "46.940300"; cov "1.000000";
+chr13 Cufflinks transcript 4253585 4253611 1000 . . gene_id "CUFF.50251";
transcript_id "CUFF.50251.1"; FPKM "31.2935331850"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov
"2.000000";
+chr13 Cufflinks exon 4253585 4253611 1000 . . gene_id "CUFF.50251";
transcript_id "CUFF.50251.1"; exon_number "1"; FPKM
"31.2935331850"; frac "1.000000"; conf_lo "0.000000";
conf_hi "75.549272"; cov "2.000000";
+chr13 Cufflinks transcript 4356816 4356842 1000 . . gene_id "CUFF.50253";
transcript_id "CUFF.50253.1"; FPKM "31.2563804501"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "75.485841"; cov
"1.997626";
+chr13 Cufflinks exon 4356816 4356842 1000 . . gene_id "CUFF.50253";
transcript_id "CUFF.50253.1"; exon_number "1"; FPKM
"31.2563804501"; frac "1.000000"; conf_lo "0.000000";
conf_hi "75.485841"; cov "1.997626";
+chr13 Cufflinks transcript 4591975 4592074 1000 . . gene_id "CUFF.50255";
transcript_id "CUFF.50255.1"; FPKM "16.8985079199"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "33.797016"; cov
"1.080000";
+chr13 Cufflinks exon 4591975 4592074 1000 . . gene_id "CUFF.50255";
transcript_id "CUFF.50255.1"; exon_number "1"; FPKM
"16.8985079199"; frac "1.000000"; conf_lo "0.000000";
conf_hi "33.797016"; cov "1.080000";
+chr13 Cufflinks transcript 4592148 4592531 1000 . . gene_id "CUFF.50257";
transcript_id "CUFF.50257.1"; FPKM "22.0032655207"; frac
"1.000000"; conf_lo "12.163106"; conf_hi "31.843425"; cov
"1.406250";
+chr13 Cufflinks exon 4592148 4592531 1000 . . gene_id "CUFF.50257";
transcript_id "CUFF.50257.1"; exon_number "1"; FPKM
"22.0032655207"; frac "1.000000"; conf_lo "12.163106";
conf_hi "31.843425"; cov "1.406250";
+chr13 Cufflinks transcript 4592862 4592890 1000 . . gene_id "CUFF.50259";
transcript_id "CUFF.50259.1"; FPKM "58.2707169652"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "116.541434"; cov
"3.724138";
+chr13 Cufflinks exon 4592862 4592890 1000 . . gene_id "CUFF.50259";
transcript_id "CUFF.50259.1"; exon_number "1"; FPKM
"58.2707169652"; frac "1.000000"; conf_lo "0.000000";
conf_hi "116.541434"; cov "3.724138";
+chr13 Cufflinks transcript 4594319 4594938 1000 - . gene_id "CUFF.50261";
transcript_id "CUFF.50261.1"; FPKM "29.3887094260"; frac
"1.000000"; conf_lo "8.607754"; conf_hi "50.169665"; cov
"1.878261";
+chr13 Cufflinks exon 4594319 4594400 1000 - . gene_id "CUFF.50261";
transcript_id "CUFF.50261.1"; exon_number "1"; FPKM
"29.3887094260"; frac "1.000000"; conf_lo "8.607754";
conf_hi "50.169665"; cov "1.878261";
+chr13 Cufflinks exon 4594906 4594938 1000 - . gene_id "CUFF.50261";
transcript_id "CUFF.50261.1"; exon_number "2"; FPKM
"29.3887094260"; frac "1.000000"; conf_lo "8.607754";
conf_hi "50.169665"; cov "1.878261";
+chr13 Cufflinks transcript 4596799 4598059 1000 - . gene_id "CUFF.50263";
transcript_id "CUFF.50263.1"; FPKM "22.8358215134"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "45.671643"; cov
"1.459459";
+chr13 Cufflinks exon 4596799 4596828 1000 - . gene_id "CUFF.50263";
transcript_id "CUFF.50263.1"; exon_number "1"; FPKM
"22.8358215134"; frac "1.000000"; conf_lo "0.000000";
conf_hi "45.671643"; cov "1.459459";
+chr13 Cufflinks exon 4598016 4598059 1000 - . gene_id "CUFF.50263";
transcript_id "CUFF.50263.1"; exon_number "2"; FPKM
"22.8358215134"; frac "1.000000"; conf_lo "0.000000";
conf_hi "45.671643"; cov "1.459459";
+chr13 Cufflinks transcript 4601790 4601816 1000 . . gene_id "CUFF.50265";
transcript_id "CUFF.50265.1"; FPKM "31.2935331850"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov
"2.000000";
+chr13 Cufflinks exon 4601790 4601816 1000 . . gene_id "CUFF.50265";
transcript_id "CUFF.50265.1"; exon_number "1"; FPKM
"31.2935331850"; frac "1.000000"; conf_lo "0.000000";
conf_hi "75.549272"; cov "2.000000";
+chr13 Cufflinks transcript 4601884 4601952 1000 . . gene_id "CUFF.50267";
transcript_id "CUFF.50267.1"; FPKM "12.2452955941"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "29.562759"; cov
"0.782609";
+chr13 Cufflinks exon 4601884 4601952 1000 . . gene_id "CUFF.50267";
transcript_id "CUFF.50267.1"; exon_number "1"; FPKM
"12.2452955941"; frac "1.000000"; conf_lo "0.000000";
conf_hi "29.562759"; cov "0.782609";
+chr13 Cufflinks transcript 3541632 3541797 1000 . . gene_id "CUFF.50269";
transcript_id "CUFF.50269.1"; FPKM "10.1798240481"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "20.359648"; cov
"0.650602";
+chr13 Cufflinks exon 3541632 3541797 1000 . . gene_id "CUFF.50269";
transcript_id "CUFF.50269.1"; exon_number "1"; FPKM
"10.1798240481"; frac "1.000000"; conf_lo "0.000000";
conf_hi "20.359648"; cov "0.650602";
+chr13 Cufflinks transcript 3541917 3542016 1000 . . gene_id "CUFF.50271";
transcript_id "CUFF.50271.1"; FPKM "12.6738809399"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "27.308418"; cov
"0.810000";
+chr13 Cufflinks exon 3541917 3542016 1000 . . gene_id "CUFF.50271";
transcript_id "CUFF.50271.1"; exon_number "1"; FPKM
"12.6738809399"; frac "1.000000"; conf_lo "0.000000";
conf_hi "27.308418"; cov "0.810000";
+chr13 Cufflinks transcript 3542096 3542122 1000 . . gene_id "CUFF.50273";
transcript_id "CUFF.50273.1"; FPKM "31.2935331850"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov
"2.000000";
+chr13 Cufflinks exon 3542096 3542122 1000 . . gene_id "CUFF.50273";
transcript_id "CUFF.50273.1"; exon_number "1"; FPKM
"31.2935331850"; frac "1.000000"; conf_lo "0.000000";
conf_hi "75.549272"; cov "2.000000";
+chr13 Cufflinks transcript 3548183 3548209 1000 . . gene_id "CUFF.50275";
transcript_id "CUFF.50275.1"; FPKM "31.2935331850"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov
"2.000000";
+chr13 Cufflinks exon 3548183 3548209 1000 . . gene_id "CUFF.50275";
transcript_id "CUFF.50275.1"; exon_number "1"; FPKM
"31.2935331850"; frac "1.000000"; conf_lo "0.000000";
conf_hi "75.549272"; cov "2.000000";
+chr13 Cufflinks transcript 3559238 3559264 1000 . . gene_id "CUFF.50277";
transcript_id "CUFF.50277.1"; FPKM "15.6467665925"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov
"1.000000";
+chr13 Cufflinks exon 3559238 3559264 1000 . . gene_id "CUFF.50277";
transcript_id "CUFF.50277.1"; exon_number "1"; FPKM
"15.6467665925"; frac "1.000000"; conf_lo "0.000000";
conf_hi "46.940300"; cov "1.000000";
+chr13 Cufflinks transcript 3559265 3559291 1000 . . gene_id "CUFF.50279";
transcript_id "CUFF.50279.1"; FPKM "15.6467665925"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov
"1.000000";
+chr13 Cufflinks exon 3559265 3559291 1000 . . gene_id "CUFF.50279";
transcript_id "CUFF.50279.1"; exon_number "1"; FPKM
"15.6467665925"; frac "1.000000"; conf_lo "0.000000";
conf_hi "46.940300"; cov "1.000000";
+chr13 Cufflinks transcript 3561489 3561515 1000 . . gene_id "CUFF.50281";
transcript_id "CUFF.50281.1"; FPKM "15.6467665925"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov
"1.000000";
+chr13 Cufflinks exon 3561489 3561515 1000 . . gene_id "CUFF.50281";
transcript_id "CUFF.50281.1"; exon_number "1"; FPKM
"15.6467665925"; frac "1.000000"; conf_lo "0.000000";
conf_hi "46.940300"; cov "1.000000";
+chr13 Cufflinks transcript 3561516 3561616 1000 . . gene_id "CUFF.50283";
transcript_id "CUFF.50283.1"; FPKM "12.5483969702"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "27.038038"; cov
"0.801980";
+chr13 Cufflinks exon 3561516 3561616 1000 . . gene_id "CUFF.50283";
transcript_id "CUFF.50283.1"; exon_number "1"; FPKM
"12.5483969702"; frac "1.000000"; conf_lo "0.000000";
conf_hi "27.038038"; cov "0.801980";
+chr13 Cufflinks transcript 3563788 3563913 1000 . . gene_id "CUFF.50285";
transcript_id "CUFF.50285.1"; FPKM "16.7564314774"; frac
"1.000000"; conf_lo "1.765464"; conf_hi "31.747399"; cov
"1.070920";
+chr13 Cufflinks exon 3563788 3563913 1000 . . gene_id "CUFF.50285";
transcript_id "CUFF.50285.1"; exon_number "1"; FPKM
"16.7564314774"; frac "1.000000"; conf_lo "1.765464";
conf_hi "31.747399"; cov "1.070920";
+chr13 Cufflinks transcript 3564114 3564162 1000 . . gene_id "CUFF.50287";
transcript_id "CUFF.50287.1"; FPKM "68.9735017140"; frac
"1.000000"; conf_lo "20.201871"; conf_hi "117.745132"; cov
"4.408163";
+chr13 Cufflinks exon 3564114 3564162 1000 . . gene_id "CUFF.50287";
transcript_id "CUFF.50287.1"; exon_number "1"; FPKM
"68.9735017140"; frac "1.000000"; conf_lo "20.201871";
conf_hi "117.745132"; cov "4.408163";
+chr13 Cufflinks transcript 5861035 5872268 1000 - . gene_id "CUFF.50289";
transcript_id "CUFF.50289.1"; FPKM "7.5439767500"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "18.212771"; cov
"0.482143";
+chr13 Cufflinks exon 5861035 5861117 1000 - . gene_id "CUFF.50289";
transcript_id "CUFF.50289.1"; exon_number "1"; FPKM
"7.5439767500"; frac "1.000000"; conf_lo "0.000000"; conf_hi
"18.212771"; cov "0.482143";
+chr13 Cufflinks exon 5872240 5872268 1000 - . gene_id "CUFF.50289";
transcript_id "CUFF.50289.1"; exon_number "2"; FPKM
"7.5439767500"; frac "1.000000"; conf_lo "0.000000"; conf_hi
"18.212771"; cov "0.482143";
+chr13 Cufflinks transcript 5864061 5864135 1000 . . gene_id "CUFF.50291";
transcript_id "CUFF.50291.1"; FPKM "16.8985079199"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "36.411224"; cov
"1.080000";
+chr13 Cufflinks exon 5864061 5864135 1000 . . gene_id "CUFF.50291";
transcript_id "CUFF.50291.1"; exon_number "1"; FPKM
"16.8985079199"; frac "1.000000"; conf_lo "0.000000";
conf_hi "36.411224"; cov "1.080000";
+chr13 Cufflinks transcript 5864192 5864585 1000 . . gene_id "CUFF.50293";
transcript_id "CUFF.50293.1"; FPKM "18.2280859542"; frac
"1.000000"; conf_lo "9.386166"; conf_hi "27.070006"; cov
"1.164975";
+chr13 Cufflinks exon 5864192 5864585 1000 . . gene_id "CUFF.50293";
transcript_id "CUFF.50293.1"; exon_number "1"; FPKM
"18.2280859542"; frac "1.000000"; conf_lo "9.386166";
conf_hi "27.070006"; cov "1.164975";
+chr13 Cufflinks transcript 5865070 5865096 1000 . . gene_id "CUFF.50295";
transcript_id "CUFF.50295.1"; FPKM "31.2935331850"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov
"2.000000";
+chr13 Cufflinks exon 5865070 5865096 1000 . . gene_id "CUFF.50295";
transcript_id "CUFF.50295.1"; exon_number "1"; FPKM
"31.2935331850"; frac "1.000000"; conf_lo "0.000000";
conf_hi "75.549272"; cov "2.000000";
+chr13 Cufflinks transcript 5865442 5866941 1000 + . gene_id "CUFF.50297";
transcript_id "CUFF.50297.1"; FPKM "13.2019593124"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "28.446269"; cov
"0.843750";
+chr13 Cufflinks exon 5865442 5865510 1000 + . gene_id "CUFF.50297";
transcript_id "CUFF.50297.1"; exon_number "1"; FPKM
"13.2019593124"; frac "1.000000"; conf_lo "0.000000";
conf_hi "28.446269"; cov "0.843750";
+chr13 Cufflinks exon 5866915 5866941 1000 + . gene_id "CUFF.50297";
transcript_id "CUFF.50297.1"; exon_number "2"; FPKM
"13.2019593124"; frac "1.000000"; conf_lo "0.000000";
conf_hi "28.446269"; cov "0.843750";
+chr13 Cufflinks transcript 5866598 5866661 1000 . . gene_id "CUFF.50299";
transcript_id "CUFF.50299.1"; FPKM "92.4137151871"; frac
"1.000000"; conf_lo "43.016507"; conf_hi "141.810924"; cov
"5.906250";
+chr13 Cufflinks exon 5866598 5866661 1000 . . gene_id "CUFF.50299";
transcript_id "CUFF.50299.1"; exon_number "1"; FPKM
"92.4137151871"; frac "1.000000"; conf_lo "43.016507";
conf_hi "141.810924"; cov "5.906250";
+chr13 Cufflinks transcript 5866756 5866871 1000 . . gene_id "CUFF.50301";
transcript_id "CUFF.50301.1"; FPKM "83.7641556375"; frac
"1.000000"; conf_lo "48.832088"; conf_hi "118.696223"; cov
"5.353448";
+chr13 Cufflinks exon 5866756 5866871 1000 . . gene_id "CUFF.50301";
transcript_id "CUFF.50301.1"; exon_number "1"; FPKM
"83.7641556375"; frac "1.000000"; conf_lo "48.832088";
conf_hi "118.696223"; cov "5.353448";
+chr13 Cufflinks transcript 5866964 5867014 1000 . . gene_id "CUFF.50303";
transcript_id "CUFF.50303.1"; FPKM "124.2537347053"; frac
"1.000000"; conf_lo "60.089382"; conf_hi "188.418087"; cov
"7.941176";
+chr13 Cufflinks exon 5866964 5867014 1000 . . gene_id "CUFF.50303";
transcript_id "CUFF.50303.1"; exon_number "1"; FPKM
"124.2537347053"; frac "1.000000"; conf_lo "60.089382";
conf_hi "188.418087"; cov "7.941176";
+chr13 Cufflinks transcript 5867386 5867412 1000 . . gene_id "CUFF.50305";
transcript_id "CUFF.50305.1"; FPKM "15.6467665925"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov
"1.000000";
+chr13 Cufflinks exon 5867386 5867412 1000 . . gene_id "CUFF.50305";
transcript_id "CUFF.50305.1"; exon_number "1"; FPKM
"15.6467665925"; frac "1.000000"; conf_lo "0.000000";
conf_hi "46.940300"; cov "1.000000";
+chr13 Cufflinks transcript 5867480 5867506 1000 . . gene_id "CUFF.50307";
transcript_id "CUFF.50307.1"; FPKM "15.6467665925"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov
"1.000000";
+chr13 Cufflinks exon 5867480 5867506 1000 . . gene_id "CUFF.50307";
transcript_id "CUFF.50307.1"; exon_number "1"; FPKM
"15.6467665925"; frac "1.000000"; conf_lo "0.000000";
conf_hi "46.940300"; cov "1.000000";
+chr13 Cufflinks transcript 5867688 5867737 1000 . . gene_id "CUFF.50309";
transcript_id "CUFF.50309.1"; FPKM "25.3477618799"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "54.616836"; cov
"1.620000";
+chr13 Cufflinks exon 5867688 5867737 1000 . . gene_id "CUFF.50309";
transcript_id "CUFF.50309.1"; exon_number "1"; FPKM
"25.3477618799"; frac "1.000000"; conf_lo "0.000000";
conf_hi "54.616836"; cov "1.620000";
+chr13 Cufflinks transcript 5867820 5868008 1000 . . gene_id "CUFF.50311";
transcript_id "CUFF.50311.1"; FPKM "15.6467665925"; frac
"1.000000"; conf_lo "3.818923"; conf_hi "27.474610"; cov
"1.000000";
+chr13 Cufflinks exon 5867820 5868008 1000 . . gene_id "CUFF.50311";
transcript_id "CUFF.50311.1"; exon_number "1"; FPKM
"15.6467665925"; frac "1.000000"; conf_lo "3.818923";
conf_hi "27.474610"; cov "1.000000";
+chr13 Cufflinks transcript 5868254 5868314 1000 . . gene_id "CUFF.50313";
transcript_id "CUFF.50313.1"; FPKM "13.8512359999"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "33.439842"; cov
"0.885246";
+chr13 Cufflinks exon 5868254 5868314 1000 . . gene_id "CUFF.50313";
transcript_id "CUFF.50313.1"; exon_number "1"; FPKM
"13.8512359999"; frac "1.000000"; conf_lo "0.000000";
conf_hi "33.439842"; cov "0.885246";
+chr13 Cufflinks transcript 5869125 5869300 1000 . . gene_id "CUFF.50315";
transcript_id "CUFF.50315.1"; FPKM "88.8131808291"; frac
"1.000000"; conf_lo "59.611587"; conf_hi "118.014775"; cov
"5.676136";
+chr13 Cufflinks exon 5869125 5869300 1000 . . gene_id "CUFF.50315";
transcript_id "CUFF.50315.1"; exon_number "1"; FPKM
"88.8131808291"; frac "1.000000"; conf_lo "59.611587";
conf_hi "118.014775"; cov "5.676136";
+chr13 Cufflinks transcript 5869455 5869484 1000 . . gene_id "CUFF.50317";
transcript_id "CUFF.50317.1"; FPKM "133.7631356353"; frac
"1.000000"; conf_lo "46.960728"; conf_hi "220.565544"; cov
"8.548931";
+chr13 Cufflinks exon 5869455 5869484 1000 . . gene_id "CUFF.50317";
transcript_id "CUFF.50317.1"; exon_number "1"; FPKM
"133.7631356353"; frac "1.000000"; conf_lo "46.960728";
conf_hi "220.565544"; cov "8.548931";
+chr13 Cufflinks transcript 5869555 5869581 1000 . . gene_id "CUFF.50319";
transcript_id "CUFF.50319.1"; FPKM "125.1741327402"; frac
"1.000000"; conf_lo "36.662655"; conf_hi "213.685611"; cov
"8.000000";
+chr13 Cufflinks exon 5869555 5869581 1000 . . gene_id "CUFF.50319";
transcript_id "CUFF.50319.1"; exon_number "1"; FPKM
"125.1741327402"; frac "1.000000"; conf_lo "36.662655";
conf_hi "213.685611"; cov "8.000000";
+chr13 Cufflinks transcript 6205097 6205155 1000 . . gene_id "CUFF.50321";
transcript_id "CUFF.50321.1"; FPKM "14.3207694237"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "34.573396"; cov
"0.915254";
+chr13 Cufflinks exon 6205097 6205155 1000 . . gene_id "CUFF.50321";
transcript_id "CUFF.50321.1"; exon_number "1"; FPKM
"14.3207694237"; frac "1.000000"; conf_lo "0.000000";
conf_hi "34.573396"; cov "0.915254";
+chr13 Cufflinks transcript 6227260 6227293 1000 . . gene_id "CUFF.50323";
transcript_id "CUFF.50323.1"; FPKM "18.6233083846"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "49.047086"; cov
"1.190234";
+chr13 Cufflinks exon 6227260 6227293 1000 . . gene_id "CUFF.50323";
transcript_id "CUFF.50323.1"; exon_number "1"; FPKM
"18.6233083846"; frac "1.000000"; conf_lo "0.000000";
conf_hi "49.047086"; cov "1.190234";
+chr13 Cufflinks transcript 6553021 6553051 1000 . . gene_id "CUFF.50325";
transcript_id "CUFF.50325.1"; FPKM "27.2556579354"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "65.800979"; cov
"1.741935";
+chr13 Cufflinks exon 6553021 6553051 1000 . . gene_id "CUFF.50325";
transcript_id "CUFF.50325.1"; exon_number "1"; FPKM
"27.2556579354"; frac "1.000000"; conf_lo "0.000000";
conf_hi "65.800979"; cov "1.741935";
+chr13 Cufflinks transcript 6576412 6576471 1000 . . gene_id "CUFF.50327";
transcript_id "CUFF.50327.1"; FPKM "14.0820899333"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "33.997173"; cov
"0.900000";
+chr13 Cufflinks exon 6576412 6576471 1000 . . gene_id "CUFF.50327";
transcript_id "CUFF.50327.1"; exon_number "1"; FPKM
"14.0820899333"; frac "1.000000"; conf_lo "0.000000";
conf_hi "33.997173"; cov "0.900000";
+chr13 Cufflinks transcript 6576625 6576734 1000 . . gene_id "CUFF.50329";
transcript_id "CUFF.50329.1"; FPKM "26.8839898726"; frac
"1.000000"; conf_lo "6.561604"; conf_hi "47.206376"; cov
"1.718182";
+chr13 Cufflinks exon 6576625 6576734 1000 . . gene_id "CUFF.50329";
transcript_id "CUFF.50329.1"; exon_number "1"; FPKM
"26.8839898726"; frac "1.000000"; conf_lo "6.561604";
conf_hi "47.206376"; cov "1.718182";
+chr13 Cufflinks transcript 6577727 6577820 1000 . . gene_id "CUFF.50331";
transcript_id "CUFF.50331.1"; FPKM "31.4599881488"; frac
"1.000000"; conf_lo "7.678472"; conf_hi "55.241504"; cov
"2.010638";
+chr13 Cufflinks exon 6577727 6577820 1000 . . gene_id "CUFF.50331";
transcript_id "CUFF.50331.1"; exon_number "1"; FPKM
"31.4599881488"; frac "1.000000"; conf_lo "7.678472";
conf_hi "55.241504"; cov "2.010638";
+chr13 Cufflinks transcript 6579706 6579858 1000 . . gene_id "CUFF.50333";
transcript_id "CUFF.50333.1"; FPKM "11.0447764182"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "22.089553"; cov
"0.705882";
+chr13 Cufflinks exon 6579706 6579858 1000 . . gene_id "CUFF.50333";
transcript_id "CUFF.50333.1"; exon_number "1"; FPKM
"11.0447764182"; frac "1.000000"; conf_lo "0.000000";
conf_hi "22.089553"; cov "0.705882";
+chr13 Cufflinks transcript 6580126 6580152 1000 . . gene_id "CUFF.50335";
transcript_id "CUFF.50335.1"; FPKM "31.2935331850"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov
"2.000000";
+chr13 Cufflinks exon 6580126 6580152 1000 . . gene_id "CUFF.50335";
transcript_id "CUFF.50335.1"; exon_number "1"; FPKM
"31.2935331850"; frac "1.000000"; conf_lo "0.000000";
conf_hi "75.549272"; cov "2.000000";
+chr13 Cufflinks transcript 6580257 6580295 1000 . . gene_id "CUFF.50337";
transcript_id "CUFF.50337.1"; FPKM "21.6647537435"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "52.303342"; cov
"1.384615";
+chr13 Cufflinks exon 6580257 6580295 1000 . . gene_id "CUFF.50337";
transcript_id "CUFF.50337.1"; exon_number "1"; FPKM
"21.6647537435"; frac "1.000000"; conf_lo "0.000000";
conf_hi "52.303342"; cov "1.384615";
+chr13 Cufflinks transcript 6583845 6585843 1000 - . gene_id "CUFF.50339";
transcript_id "CUFF.50339.1"; FPKM "163.2242242265"; frac
"1.000000"; conf_lo "127.815919"; conf_hi "198.632530"; cov
"10.431818";
+chr13 Cufflinks exon 6583845 6583946 1000 - . gene_id "CUFF.50339";
transcript_id "CUFF.50339.1"; exon_number "1"; FPKM
"163.2242242265"; frac "1.000000"; conf_lo "127.815919";
conf_hi "198.632530"; cov "10.431818";
+chr13 Cufflinks exon 6585726 6585843 1000 - . gene_id "CUFF.50339";
transcript_id "CUFF.50339.1"; exon_number "2"; FPKM
"163.2242242265"; frac "1.000000"; conf_lo "127.815919";
conf_hi "198.632530"; cov "10.431818";
+chr13 Cufflinks transcript 6586295 6587966 1000 - . gene_id "CUFF.50341";
transcript_id "CUFF.50341.1"; FPKM "82.5011329424"; frac
"1.000000"; conf_lo "60.835274"; conf_hi "104.166992"; cov
"5.272727";
+chr13 Cufflinks exon 6586295 6586359 1000 - . gene_id "CUFF.50341";
transcript_id "CUFF.50341.1"; exon_number "1"; FPKM
"82.5011329424"; frac "1.000000"; conf_lo "60.835274";
conf_hi "104.166992"; cov "5.272727";
+chr13 Cufflinks exon 6587735 6587966 1000 - . gene_id "CUFF.50341";
transcript_id "CUFF.50341.1"; exon_number "2"; FPKM
"82.5011329424"; frac "1.000000"; conf_lo "60.835274";
conf_hi "104.166992"; cov "5.272727";
+chr13 Cufflinks transcript 6588113 6588703 1000 . . gene_id "CUFF.50343";
transcript_id "CUFF.50343.1"; FPKM "42.8896140100"; frac
"1.000000"; conf_lo "31.815563"; conf_hi "53.963665"; cov
"2.741117";
+chr13 Cufflinks exon 6588113 6588703 1000 . . gene_id "CUFF.50343";
transcript_id "CUFF.50343.1"; exon_number "1"; FPKM
"42.8896140100"; frac "1.000000"; conf_lo "31.815563";
conf_hi "53.963665"; cov "2.741117";
+chr13 Cufflinks transcript 6588763 6588911 1000 . . gene_id "CUFF.50345";
transcript_id "CUFF.50345.1"; FPKM "31.1885213287"; frac
"1.000000"; conf_lo "12.381135"; conf_hi "49.995907"; cov
"1.993289";
+chr13 Cufflinks exon 6588763 6588911 1000 . . gene_id "CUFF.50345";
transcript_id "CUFF.50345.1"; exon_number "1"; FPKM
"31.1885213287"; frac "1.000000"; conf_lo "12.381135";
conf_hi "49.995907"; cov "1.993289";
+chr13 Cufflinks transcript 6588964 6589091 1000 . . gene_id "CUFF.50347";
transcript_id "CUFF.50347.1"; FPKM "13.2019593124"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "26.403919"; cov
"0.843750";
+chr13 Cufflinks exon 6588964 6589091 1000 . . gene_id "CUFF.50347";
transcript_id "CUFF.50347.1"; exon_number "1"; FPKM
"13.2019593124"; frac "1.000000"; conf_lo "0.000000";
conf_hi "26.403919"; cov "0.843750";
+chr13 Cufflinks transcript 6589153 6589383 1000 . . gene_id "CUFF.50349";
transcript_id "CUFF.50349.1"; FPKM "12.8018999393"; frac
"1.000000"; conf_lo "3.124573"; conf_hi "22.479227"; cov
"0.818182";
+chr13 Cufflinks exon 6589153 6589383 1000 . . gene_id "CUFF.50349";
transcript_id "CUFF.50349.1"; exon_number "1"; FPKM
"12.8018999393"; frac "1.000000"; conf_lo "3.124573";
conf_hi "22.479227"; cov "0.818182";
+chr13 Cufflinks transcript 6589994 6590086 1000 . . gene_id "CUFF.50351";
transcript_id "CUFF.50351.1"; FPKM "9.0852193118"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "21.933660"; cov
"0.580645";
+chr13 Cufflinks exon 6589994 6590086 1000 . . gene_id "CUFF.50351";
transcript_id "CUFF.50351.1"; exon_number "1"; FPKM
"9.0852193118"; frac "1.000000"; conf_lo "0.000000"; conf_hi
"21.933660"; cov "0.580645";
+chr13 Cufflinks transcript 6590329 6590359 1000 . . gene_id "CUFF.50353";
transcript_id "CUFF.50353.1"; FPKM "27.2556579354"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "65.800979"; cov
"1.741935";
+chr13 Cufflinks exon 6590329 6590359 1000 . . gene_id "CUFF.50353";
transcript_id "CUFF.50353.1"; exon_number "1"; FPKM
"27.2556579354"; frac "1.000000"; conf_lo "0.000000";
conf_hi "65.800979"; cov "1.741935";
+chr13 Cufflinks transcript 6590592 6590645 1000 . . gene_id "CUFF.50355";
transcript_id "CUFF.50355.1"; FPKM "15.6467665925"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "37.774636"; cov
"1.000000";
+chr13 Cufflinks exon 6590592 6590645 1000 . . gene_id "CUFF.50355";
transcript_id "CUFF.50355.1"; exon_number "1"; FPKM
"15.6467665925"; frac "1.000000"; conf_lo "0.000000";
conf_hi "37.774636"; cov "1.000000";
+chr13 Cufflinks transcript 6590963 6591056 1000 . . gene_id "CUFF.50357";
transcript_id "CUFF.50357.1"; FPKM "17.9771360850"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "35.954272"; cov
"1.148936";
+chr13 Cufflinks exon 6590963 6591056 1000 . . gene_id "CUFF.50357";
transcript_id "CUFF.50357.1"; exon_number "1"; FPKM
"17.9771360850"; frac "1.000000"; conf_lo "0.000000";
conf_hi "35.954272"; cov "1.148936";
+chr13 Cufflinks transcript 6591182 6591208 1000 . . gene_id "CUFF.50359";
transcript_id "CUFF.50359.1"; FPKM "31.2935331850"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov
"2.000000";
+chr13 Cufflinks exon 6591182 6591208 1000 . . gene_id "CUFF.50359";
transcript_id "CUFF.50359.1"; exon_number "1"; FPKM
"31.2935331850"; frac "1.000000"; conf_lo "0.000000";
conf_hi "75.549272"; cov "2.000000";
+chr13 Cufflinks transcript 6591662 6591724 1000 . . gene_id "CUFF.50361";
transcript_id "CUFF.50361.1"; FPKM "13.4115142222"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "32.378260"; cov
"0.857143";
+chr13 Cufflinks exon 6591662 6591724 1000 . . gene_id "CUFF.50361";
transcript_id "CUFF.50361.1"; exon_number "1"; FPKM
"13.4115142222"; frac "1.000000"; conf_lo "0.000000";
conf_hi "32.378260"; cov "0.857143";
+chr13 Cufflinks transcript 6592773 6592874 1000 . . gene_id "CUFF.50363";
transcript_id "CUFF.50363.1"; FPKM "12.4253734705"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "26.772959"; cov
"0.794118";
+chr13 Cufflinks exon 6592773 6592874 1000 . . gene_id "CUFF.50363";
transcript_id "CUFF.50363.1"; exon_number "1"; FPKM
"12.4253734705"; frac "1.000000"; conf_lo "0.000000";
conf_hi "26.772959"; cov "0.794118";
+chr13 Cufflinks transcript 6580385 6581757 1000 - . gene_id "CUFF.50365";
transcript_id "CUFF.50365.1"; FPKM "324.9135847836"; frac
"1.000000"; conf_lo "293.684884"; conf_hi "356.142286"; cov
"20.765542";
+chr13 Cufflinks exon 6580385 6580838 1000 - . gene_id "CUFF.50365";
transcript_id "CUFF.50365.1"; exon_number "1"; FPKM
"324.9135847836"; frac "1.000000"; conf_lo "293.684884";
conf_hi "356.142286"; cov "20.765542";
+chr13 Cufflinks exon 6581649 6581757 1000 - . gene_id "CUFF.50365";
transcript_id "CUFF.50365.1"; exon_number "2"; FPKM
"324.9135847836"; frac "1.000000"; conf_lo "293.684884";
conf_hi "356.142286"; cov "20.765542";
+chr13 Cufflinks transcript 6594213 6594242 1000 . . gene_id "CUFF.50367";
transcript_id "CUFF.50367.1"; FPKM "28.1641798665"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "67.994345"; cov
"1.800000";
+chr13 Cufflinks exon 6594213 6594242 1000 . . gene_id "CUFF.50367";
transcript_id "CUFF.50367.1"; exon_number "1"; FPKM
"28.1641798665"; frac "1.000000"; conf_lo "0.000000";
conf_hi "67.994345"; cov "1.800000";
+chr13 Cufflinks transcript 6594897 6594938 1000 . . gene_id "CUFF.50369";
transcript_id "CUFF.50369.1"; FPKM "20.1172713332"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "48.567389"; cov
"1.285714";
+chr13 Cufflinks exon 6594897 6594938 1000 . . gene_id "CUFF.50369";
transcript_id "CUFF.50369.1"; exon_number "1"; FPKM
"20.1172713332"; frac "1.000000"; conf_lo "0.000000";
conf_hi "48.567389"; cov "1.285714";
+chr13 Cufflinks transcript 6594742 6594836 1000 . . gene_id "CUFF.50371";
transcript_id "CUFF.50371.1"; FPKM "13.3409273052"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "28.745703"; cov
"0.852632";
+chr13 Cufflinks exon 6594742 6594836 1000 . . gene_id "CUFF.50371";
transcript_id "CUFF.50371.1"; exon_number "1"; FPKM
"13.3409273052"; frac "1.000000"; conf_lo "0.000000";
conf_hi "28.745703"; cov "0.852632";
+chr13 Cufflinks transcript 6595072 6595132 1000 . . gene_id "CUFF.50373";
transcript_id "CUFF.50373.1"; FPKM "20.7768539999"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "44.767898"; cov
"1.327869";
+chr13 Cufflinks exon 6595072 6595132 1000 . . gene_id "CUFF.50373";
transcript_id "CUFF.50373.1"; exon_number "1"; FPKM
"20.7768539999"; frac "1.000000"; conf_lo "0.000000";
conf_hi "44.767898"; cov "1.327869";
+chr13 Cufflinks transcript 6595199 6595225 1000 . . gene_id "CUFF.50375";
transcript_id "CUFF.50375.1"; FPKM "15.6467665925"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov
"1.000000";
+chr13 Cufflinks exon 6595199 6595225 1000 . . gene_id "CUFF.50375";
transcript_id "CUFF.50375.1"; exon_number "1"; FPKM
"15.6467665925"; frac "1.000000"; conf_lo "0.000000";
conf_hi "46.940300"; cov "1.000000";
+chr13 Cufflinks transcript 6595246 6595272 1000 . . gene_id "CUFF.50377";
transcript_id "CUFF.50377.1"; FPKM "15.6467665925"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov
"1.000000";
+chr13 Cufflinks exon 6595246 6595272 1000 . . gene_id "CUFF.50377";
transcript_id "CUFF.50377.1"; exon_number "1"; FPKM
"15.6467665925"; frac "1.000000"; conf_lo "0.000000";
conf_hi "46.940300"; cov "1.000000";
+chr13 Cufflinks transcript 6598001 6598027 1000 . . gene_id "CUFF.50379";
transcript_id "CUFF.50379.1"; FPKM "15.6467665925"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov
"1.000000";
+chr13 Cufflinks exon 6598001 6598027 1000 . . gene_id "CUFF.50379";
transcript_id "CUFF.50379.1"; exon_number "1"; FPKM
"15.6467665925"; frac "1.000000"; conf_lo "0.000000";
conf_hi "46.940300"; cov "1.000000";
+chr13 Cufflinks transcript 6601936 6601990 1000 . . gene_id "CUFF.50381";
transcript_id "CUFF.50381.1"; FPKM "15.3622799272"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "37.087825"; cov
"0.981818";
+chr13 Cufflinks exon 6601936 6601990 1000 . . gene_id "CUFF.50381";
transcript_id "CUFF.50381.1"; exon_number "1"; FPKM
"15.3622799272"; frac "1.000000"; conf_lo "0.000000";
conf_hi "37.087825"; cov "0.981818";
+chr13 Cufflinks transcript 6604226 6604297 1000 . . gene_id "CUFF.50383";
transcript_id "CUFF.50383.1"; FPKM "17.6026124166"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "37.928358"; cov
"1.125000";
+chr13 Cufflinks exon 6604226 6604297 1000 . . gene_id "CUFF.50383";
transcript_id "CUFF.50383.1"; exon_number "1"; FPKM
"17.6026124166"; frac "1.000000"; conf_lo "0.000000";
conf_hi "37.928358"; cov "1.125000";
+chr13 Cufflinks transcript 6616305 6616331 1000 . . gene_id "CUFF.50385";
transcript_id "CUFF.50385.1"; FPKM "46.9402997776"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "101.142289"; cov
"3.000000";
+chr13 Cufflinks exon 6616305 6616331 1000 . . gene_id "CUFF.50385";
transcript_id "CUFF.50385.1"; exon_number "1"; FPKM
"46.9402997776"; frac "1.000000"; conf_lo "0.000000";
conf_hi "101.142289"; cov "3.000000";
+chr13 Cufflinks transcript 6616841 6616921 1000 . . gene_id "CUFF.50387";
transcript_id "CUFF.50387.1"; FPKM "5.2155888642"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "15.646767"; cov
"0.333333";
+chr13 Cufflinks exon 6616841 6616921 1000 . . gene_id "CUFF.50387";
transcript_id "CUFF.50387.1"; exon_number "1"; FPKM
"5.2155888642"; frac "1.000000"; conf_lo "0.000000"; conf_hi
"15.646767"; cov "0.333333";
+chr13 Cufflinks transcript 6617878 6617990 1000 . . gene_id "CUFF.50389";
transcript_id "CUFF.50389.1"; FPKM "11.2158238407"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "24.166742"; cov
"0.716814";
+chr13 Cufflinks exon 6617878 6617990 1000 . . gene_id "CUFF.50389";
transcript_id "CUFF.50389.1"; exon_number "1"; FPKM
"11.2158238407"; frac "1.000000"; conf_lo "0.000000";
conf_hi "24.166742"; cov "0.716814";
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transcript_id "CUFF.50391.1"; FPKM "28.1641798665"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "67.994345"; cov
"1.800000";
+chr13 Cufflinks exon 6618127 6618156 1000 . . gene_id "CUFF.50391";
transcript_id "CUFF.50391.1"; exon_number "1"; FPKM
"28.1641798665"; frac "1.000000"; conf_lo "0.000000";
conf_hi "67.994345"; cov "1.800000";
+chr13 Cufflinks transcript 6618432 6618463 1000 . . gene_id "CUFF.50393";
transcript_id "CUFF.50393.1"; FPKM "26.4039186249"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "63.744698"; cov
"1.687500";
+chr13 Cufflinks exon 6618432 6618463 1000 . . gene_id "CUFF.50393";
transcript_id "CUFF.50393.1"; exon_number "1"; FPKM
"26.4039186249"; frac "1.000000"; conf_lo "0.000000";
conf_hi "63.744698"; cov "1.687500";
+chr13 Cufflinks transcript 6618765 6618809 1000 . . gene_id "CUFF.50395";
transcript_id "CUFF.50395.1"; FPKM "28.1641798665"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "60.685374"; cov
"1.800000";
+chr13 Cufflinks exon 6618765 6618809 1000 . . gene_id "CUFF.50395";
transcript_id "CUFF.50395.1"; exon_number "1"; FPKM
"28.1641798665"; frac "1.000000"; conf_lo "0.000000";
conf_hi "60.685374"; cov "1.800000";
+chr13 Cufflinks transcript 6620226 6620259 1000 . . gene_id "CUFF.50397";
transcript_id "CUFF.50397.1"; FPKM "24.8507469411"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "59.995010"; cov
"1.588235";
+chr13 Cufflinks exon 6620226 6620259 1000 . . gene_id "CUFF.50397";
transcript_id "CUFF.50397.1"; exon_number "1"; FPKM
"24.8507469411"; frac "1.000000"; conf_lo "0.000000";
conf_hi "59.995010"; cov "1.588235";
+chr13 Cufflinks transcript 6795860 6795886 1000 . . gene_id "CUFF.50399";
transcript_id "CUFF.50399.1"; FPKM "31.2935331850"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov
"2.000000";
+chr13 Cufflinks exon 6795860 6795886 1000 . . gene_id "CUFF.50399";
transcript_id "CUFF.50399.1"; exon_number "1"; FPKM
"31.2935331850"; frac "1.000000"; conf_lo "0.000000";
conf_hi "75.549272"; cov "2.000000";
+chr13 Cufflinks transcript 7155940 7155966 1000 . . gene_id "CUFF.50401";
transcript_id "CUFF.50401.1"; FPKM "31.2935331850"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov
"2.000000";
+chr13 Cufflinks exon 7155940 7155966 1000 . . gene_id "CUFF.50401";
transcript_id "CUFF.50401.1"; exon_number "1"; FPKM
"31.2935331850"; frac "1.000000"; conf_lo "0.000000";
conf_hi "75.549272"; cov "2.000000";
+chr13 Cufflinks transcript 7676033 7676123 1000 . . gene_id "CUFF.50403";
transcript_id "CUFF.50403.1"; FPKM "9.2848944615"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "22.415718"; cov
"0.593407";
+chr13 Cufflinks exon 7676033 7676123 1000 . . gene_id "CUFF.50403";
transcript_id "CUFF.50403.1"; exon_number "1"; FPKM
"9.2848944615"; frac "1.000000"; conf_lo "0.000000"; conf_hi
"22.415718"; cov "0.593407";
+chr13 Cufflinks transcript 8202861 8202907 1000 . . gene_id "CUFF.50405";
transcript_id "CUFF.50405.1"; FPKM "17.9771360850"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "43.400646"; cov
"1.148936";
+chr13 Cufflinks exon 8202861 8202907 1000 . . gene_id "CUFF.50405";
transcript_id "CUFF.50405.1"; exon_number "1"; FPKM
"17.9771360850"; frac "1.000000"; conf_lo "0.000000";
conf_hi "43.400646"; cov "1.148936";
+chr13 Cufflinks transcript 8210506 8210549 1000 . . gene_id "CUFF.50407";
transcript_id "CUFF.50407.1"; FPKM "19.2028499090"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "46.359781"; cov
"1.227273";
+chr13 Cufflinks exon 8210506 8210549 1000 . . gene_id "CUFF.50407";
transcript_id "CUFF.50407.1"; exon_number "1"; FPKM
"19.2028499090"; frac "1.000000"; conf_lo "0.000000";
conf_hi "46.359781"; cov "1.227273";
+chr13 Cufflinks transcript 8240024 8240081 1000 . . gene_id "CUFF.50409";
transcript_id "CUFF.50409.1"; FPKM "14.5676792413"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "35.169489"; cov
"0.931034";
+chr13 Cufflinks exon 8240024 8240081 1000 . . gene_id "CUFF.50409";
transcript_id "CUFF.50409.1"; exon_number "1"; FPKM
"14.5676792413"; frac "1.000000"; conf_lo "0.000000";
conf_hi "35.169489"; cov "0.931034";
+chr13 Cufflinks transcript 8277443 8277522 1000 . . gene_id "CUFF.50411";
transcript_id "CUFF.50411.1"; FPKM "10.5615674500"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "25.497879"; cov
"0.675000";
+chr13 Cufflinks exon 8277443 8277522 1000 . . gene_id "CUFF.50411";
transcript_id "CUFF.50411.1"; exon_number "1"; FPKM
"10.5615674500"; frac "1.000000"; conf_lo "0.000000";
conf_hi "25.497879"; cov "0.675000";
+chr13 Cufflinks transcript 8277606 8277673 1000 . . gene_id "CUFF.50413";
transcript_id "CUFF.50413.1"; FPKM "24.8507469411"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "49.701494"; cov
"1.588235";
+chr13 Cufflinks exon 8277606 8277673 1000 . . gene_id "CUFF.50413";
transcript_id "CUFF.50413.1"; exon_number "1"; FPKM
"24.8507469411"; frac "1.000000"; conf_lo "0.000000";
conf_hi "49.701494"; cov "1.588235";
+chr13 Cufflinks transcript 8277822 8277848 1000 . . gene_id "CUFF.50415";
transcript_id "CUFF.50415.1"; FPKM "31.2935331850"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov
"2.000000";
+chr13 Cufflinks exon 8277822 8277848 1000 . . gene_id "CUFF.50415";
transcript_id "CUFF.50415.1"; exon_number "1"; FPKM
"31.2935331850"; frac "1.000000"; conf_lo "0.000000";
conf_hi "75.549272"; cov "2.000000";
+chr13 Cufflinks transcript 8277918 8277977 1000 . . gene_id "CUFF.50417";
transcript_id "CUFF.50417.1"; FPKM "21.1231348999"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "45.514030"; cov
"1.350000";
+chr13 Cufflinks exon 8277918 8277977 1000 . . gene_id "CUFF.50417";
transcript_id "CUFF.50417.1"; exon_number "1"; FPKM
"21.1231348999"; frac "1.000000"; conf_lo "0.000000";
conf_hi "45.514030"; cov "1.350000";
+chr13 Cufflinks transcript 8278095 8278121 1000 . . gene_id "CUFF.50419";
transcript_id "CUFF.50419.1"; FPKM "31.2935331850"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov
"2.000000";
+chr13 Cufflinks exon 8278095 8278121 1000 . . gene_id "CUFF.50419";
transcript_id "CUFF.50419.1"; exon_number "1"; FPKM
"31.2935331850"; frac "1.000000"; conf_lo "0.000000";
conf_hi "75.549272"; cov "2.000000";
+chr13 Cufflinks transcript 8278201 8278350 1000 . . gene_id "CUFF.50421";
transcript_id "CUFF.50421.1"; FPKM "14.0820899333"; frac
"1.000000"; conf_lo "1.486686"; conf_hi "26.677494"; cov
"0.900000";
+chr13 Cufflinks exon 8278201 8278350 1000 . . gene_id "CUFF.50421";
transcript_id "CUFF.50421.1"; exon_number "1"; FPKM
"14.0820899333"; frac "1.000000"; conf_lo "1.486686";
conf_hi "26.677494"; cov "0.900000";
+chr13 Cufflinks transcript 8278906 8278932 1000 . . gene_id "CUFF.50423";
transcript_id "CUFF.50423.1"; FPKM "46.9402997776"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "101.142289"; cov
"3.000000";
+chr13 Cufflinks exon 8278906 8278932 1000 . . gene_id "CUFF.50423";
transcript_id "CUFF.50423.1"; exon_number "1"; FPKM
"46.9402997776"; frac "1.000000"; conf_lo "0.000000";
conf_hi "101.142289"; cov "3.000000";
+chr13 Cufflinks transcript 8281673 8281699 1000 . . gene_id "CUFF.50425";
transcript_id "CUFF.50425.1"; FPKM "31.2935331850"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov
"2.000000";
+chr13 Cufflinks exon 8281673 8281699 1000 . . gene_id "CUFF.50425";
transcript_id "CUFF.50425.1"; exon_number "1"; FPKM
"31.2935331850"; frac "1.000000"; conf_lo "0.000000";
conf_hi "75.549272"; cov "2.000000";
+chr13 Cufflinks transcript 8311626 8311652 1000 . . gene_id "CUFF.50427";
transcript_id "CUFF.50427.1"; FPKM "31.2935331850"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov
"2.000000";
+chr13 Cufflinks exon 8311626 8311652 1000 . . gene_id "CUFF.50427";
transcript_id "CUFF.50427.1"; exon_number "1"; FPKM
"31.2935331850"; frac "1.000000"; conf_lo "0.000000";
conf_hi "75.549272"; cov "2.000000";
+chr13 Cufflinks transcript 8321948 8321974 1000 . . gene_id "CUFF.50429";
transcript_id "CUFF.50429.1"; FPKM "31.2935331850"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov
"2.000000";
+chr13 Cufflinks exon 8321948 8321974 1000 . . gene_id "CUFF.50429";
transcript_id "CUFF.50429.1"; exon_number "1"; FPKM
"31.2935331850"; frac "1.000000"; conf_lo "0.000000";
conf_hi "75.549272"; cov "2.000000";
+chr13 Cufflinks transcript 8330761 8330829 1000 . . gene_id "CUFF.50431";
transcript_id "CUFF.50431.1"; FPKM "12.2452955941"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "29.562759"; cov
"0.782609";
+chr13 Cufflinks exon 8330761 8330829 1000 . . gene_id "CUFF.50431";
transcript_id "CUFF.50431.1"; exon_number "1"; FPKM
"12.2452955941"; frac "1.000000"; conf_lo "0.000000";
conf_hi "29.562759"; cov "0.782609";
+chr13 Cufflinks transcript 8334495 8335002 1000 . . gene_id "CUFF.50433";
transcript_id "CUFF.50433.1"; FPKM "24.1169650432"; frac
"1.000000"; conf_lo "15.160149"; conf_hi "33.073781"; cov
"1.541339";
+chr13 Cufflinks exon 8334495 8335002 1000 . . gene_id "CUFF.50433";
transcript_id "CUFF.50433.1"; exon_number "1"; FPKM
"24.1169650432"; frac "1.000000"; conf_lo "15.160149";
conf_hi "33.073781"; cov "1.541339";
+chr13 Cufflinks transcript 8335517 8335639 1000 . . gene_id "CUFF.50435";
transcript_id "CUFF.50435.1"; FPKM "13.7386243251"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "27.477249"; cov
"0.878049";
+chr13 Cufflinks exon 8335517 8335639 1000 . . gene_id "CUFF.50435";
transcript_id "CUFF.50435.1"; exon_number "1"; FPKM
"13.7386243251"; frac "1.000000"; conf_lo "0.000000";
conf_hi "27.477249"; cov "0.878049";
+chr13 Cufflinks transcript 8390965 8390991 1000 . . gene_id "CUFF.50437";
transcript_id "CUFF.50437.1"; FPKM "31.2935331850"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov
"2.000000";
+chr13 Cufflinks exon 8390965 8390991 1000 . . gene_id "CUFF.50437";
transcript_id "CUFF.50437.1"; exon_number "1"; FPKM
"31.2935331850"; frac "1.000000"; conf_lo "0.000000";
conf_hi "75.549272"; cov "2.000000";
+chr13 Cufflinks transcript 8431938 8432046 1000 . . gene_id "CUFF.50439";
transcript_id "CUFF.50439.1"; FPKM "15.5032182752"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "31.006437"; cov
"0.990826";
+chr13 Cufflinks exon 8431938 8432046 1000 . . gene_id "CUFF.50439";
transcript_id "CUFF.50439.1"; exon_number "1"; FPKM
"15.5032182752"; frac "1.000000"; conf_lo "0.000000";
conf_hi "31.006437"; cov "0.990826";
+chr13 Cufflinks transcript 8431688 8431754 1000 . . gene_id "CUFF.50441";
transcript_id "CUFF.50441.1"; FPKM "12.6108268059"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "30.445229"; cov
"0.805970";
+chr13 Cufflinks exon 8431688 8431754 1000 . . gene_id "CUFF.50441";
transcript_id "CUFF.50441.1"; exon_number "1"; FPKM
"12.6108268059"; frac "1.000000"; conf_lo "0.000000";
conf_hi "30.445229"; cov "0.805970";
+chr13 Cufflinks transcript 8432289 8432315 1000 . . gene_id "CUFF.50443";
transcript_id "CUFF.50443.1"; FPKM "15.6467665925"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov
"1.000000";
+chr13 Cufflinks exon 8432289 8432315 1000 . . gene_id "CUFF.50443";
transcript_id "CUFF.50443.1"; exon_number "1"; FPKM
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conf_hi "46.940300"; cov "1.000000";
+chr13 Cufflinks transcript 8432115 8432188 1000 . . gene_id "CUFF.50445";
transcript_id "CUFF.50445.1"; FPKM "11.4179107567"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "27.565275"; cov
"0.729730";
+chr13 Cufflinks exon 8432115 8432188 1000 . . gene_id "CUFF.50445";
transcript_id "CUFF.50445.1"; exon_number "1"; FPKM
"11.4179107567"; frac "1.000000"; conf_lo "0.000000";
conf_hi "27.565275"; cov "0.729730";
+chr13 Cufflinks transcript 8463173 8463199 1000 . . gene_id "CUFF.50447";
transcript_id "CUFF.50447.1"; FPKM "31.2935331850"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov
"2.000000";
+chr13 Cufflinks exon 8463173 8463199 1000 . . gene_id "CUFF.50447";
transcript_id "CUFF.50447.1"; exon_number "1"; FPKM
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conf_hi "75.549272"; cov "2.000000";
+chr13 Cufflinks transcript 8482167 8482193 1000 . . gene_id "CUFF.50449";
transcript_id "CUFF.50449.1"; FPKM "31.2935331850"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov
"2.000000";
+chr13 Cufflinks exon 8482167 8482193 1000 . . gene_id "CUFF.50449";
transcript_id "CUFF.50449.1"; exon_number "1"; FPKM
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conf_hi "75.549272"; cov "2.000000";
+chr13 Cufflinks transcript 8518188 8518214 1000 . . gene_id "CUFF.50451";
transcript_id "CUFF.50451.1"; FPKM "31.2935331850"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov
"2.000000";
+chr13 Cufflinks exon 8518188 8518214 1000 . . gene_id "CUFF.50451";
transcript_id "CUFF.50451.1"; exon_number "1"; FPKM
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conf_hi "75.549272"; cov "2.000000";
+chr13 Cufflinks transcript 8619978 8620005 1000 . . gene_id "CUFF.50453";
transcript_id "CUFF.50453.1"; FPKM "30.1759069999"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "72.851084"; cov
"1.928571";
+chr13 Cufflinks exon 8619978 8620005 1000 . . gene_id "CUFF.50453";
transcript_id "CUFF.50453.1"; exon_number "1"; FPKM
"30.1759069999"; frac "1.000000"; conf_lo "0.000000";
conf_hi "72.851084"; cov "1.928571";
+chr13 Cufflinks transcript 8669464 8669490 1000 . . gene_id "CUFF.50455";
transcript_id "CUFF.50455.1"; FPKM "31.2935331850"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov
"2.000000";
+chr13 Cufflinks exon 8669464 8669490 1000 . . gene_id "CUFF.50455";
transcript_id "CUFF.50455.1"; exon_number "1"; FPKM
"31.2935331850"; frac "1.000000"; conf_lo "0.000000";
conf_hi "75.549272"; cov "2.000000";
+chr13 Cufflinks transcript 8705396 8705459 1000 . . gene_id "CUFF.50457";
transcript_id "CUFF.50457.1"; FPKM "13.2019593124"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "31.872349"; cov
"0.843750";
+chr13 Cufflinks exon 8705396 8705459 1000 . . gene_id "CUFF.50457";
transcript_id "CUFF.50457.1"; exon_number "1"; FPKM
"13.2019593124"; frac "1.000000"; conf_lo "0.000000";
conf_hi "31.872349"; cov "0.843750";
+chr13 Cufflinks transcript 8719319 8719345 1000 . . gene_id "CUFF.50459";
transcript_id "CUFF.50459.1"; FPKM "31.2935331850"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov
"2.000000";
+chr13 Cufflinks exon 8719319 8719345 1000 . . gene_id "CUFF.50459";
transcript_id "CUFF.50459.1"; exon_number "1"; FPKM
"31.2935331850"; frac "1.000000"; conf_lo "0.000000";
conf_hi "75.549272"; cov "2.000000";
+chr13 Cufflinks transcript 8766868 8767005 1000 . . gene_id "CUFF.50461";
transcript_id "CUFF.50461.1"; FPKM "12.2452955941"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "24.490591"; cov
"0.782609";
+chr13 Cufflinks exon 8766868 8767005 1000 . . gene_id "CUFF.50461";
transcript_id "CUFF.50461.1"; exon_number "1"; FPKM
"12.2452955941"; frac "1.000000"; conf_lo "0.000000";
conf_hi "24.490591"; cov "0.782609";
+chr13 Cufflinks transcript 8767194 8767393 1000 . . gene_id "CUFF.50463";
transcript_id "CUFF.50463.1"; FPKM "12.6738809399"; frac
"1.000000"; conf_lo "2.325700"; conf_hi "23.022061"; cov
"0.810000";
+chr13 Cufflinks exon 8767194 8767393 1000 . . gene_id "CUFF.50463";
transcript_id "CUFF.50463.1"; exon_number "1"; FPKM
"12.6738809399"; frac "1.000000"; conf_lo "2.325700";
conf_hi "23.022061"; cov "0.810000";
+chr13 Cufflinks transcript 8767461 8767531 1000 . . gene_id "CUFF.50465";
transcript_id "CUFF.50465.1"; FPKM "17.8505365351"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "38.462561"; cov
"1.140845";
+chr13 Cufflinks exon 8767461 8767531 1000 . . gene_id "CUFF.50465";
transcript_id "CUFF.50465.1"; exon_number "1"; FPKM
"17.8505365351"; frac "1.000000"; conf_lo "0.000000";
conf_hi "38.462561"; cov "1.140845";
+chr13 Cufflinks transcript 8767695 8767885 1000 . . gene_id "CUFF.50467";
transcript_id "CUFF.50467.1"; FPKM "17.6947726910"; frac
"1.000000"; conf_lo "5.182679"; conf_hi "30.206866"; cov
"1.130890";
+chr13 Cufflinks exon 8767695 8767885 1000 . . gene_id "CUFF.50467";
transcript_id "CUFF.50467.1"; exon_number "1"; FPKM
"17.6947726910"; frac "1.000000"; conf_lo "5.182679";
conf_hi "30.206866"; cov "1.130890";
+chr13 Cufflinks transcript 8767947 8767992 1000 . . gene_id "CUFF.50469";
transcript_id "CUFF.50469.1"; FPKM "27.5519150868"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "59.366126"; cov
"1.760870";
+chr13 Cufflinks exon 8767947 8767992 1000 . . gene_id "CUFF.50469";
transcript_id "CUFF.50469.1"; exon_number "1"; FPKM
"27.5519150868"; frac "1.000000"; conf_lo "0.000000";
conf_hi "59.366126"; cov "1.760870";
+chr13 Cufflinks transcript 8784118 8784193 1000 . . gene_id "CUFF.50471";
transcript_id "CUFF.50471.1"; FPKM "16.6761591315"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "35.932129"; cov
"1.065789";
+chr13 Cufflinks exon 8784118 8784193 1000 . . gene_id "CUFF.50471";
transcript_id "CUFF.50471.1"; exon_number "1"; FPKM
"16.6761591315"; frac "1.000000"; conf_lo "0.000000";
conf_hi "35.932129"; cov "1.065789";
+chr13 Cufflinks transcript 8802391 8802417 1000 . . gene_id "CUFF.50473";
transcript_id "CUFF.50473.1"; FPKM "109.5273661476"; frac
"1.000000"; conf_lo "26.732460"; conf_hi "192.322273"; cov
"7.000000";
+chr13 Cufflinks exon 8802391 8802417 1000 . . gene_id "CUFF.50473";
transcript_id "CUFF.50473.1"; exon_number "1"; FPKM
"109.5273661476"; frac "1.000000"; conf_lo "26.732460";
conf_hi "192.322273"; cov "7.000000";
+chr13 Cufflinks transcript 8802581 8802610 1000 . . gene_id "CUFF.50475";
transcript_id "CUFF.50475.1"; FPKM "154.9029892659"; frac
"1.000000"; conf_lo "61.492972"; conf_hi "248.313006"; cov
"9.900000";
+chr13 Cufflinks exon 8802581 8802610 1000 . . gene_id "CUFF.50475";
transcript_id "CUFF.50475.1"; exon_number "1"; FPKM
"154.9029892659"; frac "1.000000"; conf_lo "61.492972";
conf_hi "248.313006"; cov "9.900000";
+chr13 Cufflinks transcript 8803098 8803283 1000 . . gene_id "CUFF.50477";
transcript_id "CUFF.50477.1"; FPKM "18.1704386236"; frac
"1.000000"; conf_lo "5.321998"; conf_hi "31.018879"; cov
"1.161290";
+chr13 Cufflinks exon 8803098 8803283 1000 . . gene_id "CUFF.50477";
transcript_id "CUFF.50477.1"; exon_number "1"; FPKM
"18.1704386236"; frac "1.000000"; conf_lo "5.321998";
conf_hi "31.018879"; cov "1.161290";
+chr13 Cufflinks transcript 8803340 8803703 1000 . . gene_id "CUFF.50479";
transcript_id "CUFF.50479.1"; FPKM "12.7584623804"; frac
"1.000000"; conf_lo "5.062328"; conf_hi "20.454597"; cov
"0.815406";
+chr13 Cufflinks exon 8803340 8803703 1000 . . gene_id "CUFF.50479";
transcript_id "CUFF.50479.1"; exon_number "1"; FPKM
"12.7584623804"; frac "1.000000"; conf_lo "5.062328";
conf_hi "20.454597"; cov "0.815406";
+chr13 Cufflinks transcript 8803760 8819743 1000 + . gene_id "CUFF.50481";
transcript_id "CUFF.50481.1"; FPKM "15.1783005269"; frac
"1.000000"; conf_lo "2.785270"; conf_hi "27.571331"; cov
"0.970060";
+chr13 Cufflinks exon 8803760 8803879 1000 + . gene_id "CUFF.50481";
transcript_id "CUFF.50481.1"; exon_number "1"; FPKM
"15.1783005269"; frac "1.000000"; conf_lo "2.785270";
conf_hi "27.571331"; cov "0.970060";
+chr13 Cufflinks exon 8819697 8819743 1000 + . gene_id "CUFF.50481";
transcript_id "CUFF.50481.1"; exon_number "2"; FPKM
"15.1783005269"; frac "1.000000"; conf_lo "2.785270";
conf_hi "27.571331"; cov "0.970060";
+chr13 Cufflinks transcript 8819122 8819153 1000 . . gene_id "CUFF.50483";
transcript_id "CUFF.50483.1"; FPKM "26.4039186249"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "63.744698"; cov
"1.687500";
+chr13 Cufflinks exon 8819122 8819153 1000 . . gene_id "CUFF.50483";
transcript_id "CUFF.50483.1"; exon_number "1"; FPKM
"26.4039186249"; frac "1.000000"; conf_lo "0.000000";
conf_hi "63.744698"; cov "1.687500";
+chr13 Cufflinks transcript 8831114 8831142 1000 . . gene_id "CUFF.50485";
transcript_id "CUFF.50485.1"; FPKM "29.1353584826"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "70.338978"; cov
"1.862069";
+chr13 Cufflinks exon 8831114 8831142 1000 . . gene_id "CUFF.50485";
transcript_id "CUFF.50485.1"; exon_number "1"; FPKM
"29.1353584826"; frac "1.000000"; conf_lo "0.000000";
conf_hi "70.338978"; cov "1.862069";
+chr13 Cufflinks transcript 8831216 8831252 1000 . . gene_id "CUFF.50487";
transcript_id "CUFF.50487.1"; FPKM "34.2537322701"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "73.806535"; cov
"2.189189";
+chr13 Cufflinks exon 8831216 8831252 1000 . . gene_id "CUFF.50487";
transcript_id "CUFF.50487.1"; exon_number "1"; FPKM
"34.2537322701"; frac "1.000000"; conf_lo "0.000000";
conf_hi "73.806535"; cov "2.189189";
+chr13 Cufflinks transcript 8831404 8831522 1000 . . gene_id "CUFF.50489";
transcript_id "CUFF.50489.1"; FPKM "17.7505335293"; frac
"1.000000"; conf_lo "1.873974"; conf_hi "33.627093"; cov
"1.134454";
+chr13 Cufflinks exon 8831404 8831522 1000 . . gene_id "CUFF.50489";
transcript_id "CUFF.50489.1"; exon_number "1"; FPKM
"17.7505335293"; frac "1.000000"; conf_lo "1.873974";
conf_hi "33.627093"; cov "1.134454";
+chr13 Cufflinks transcript 8849862 8849935 1000 . . gene_id "CUFF.50491";
transcript_id "CUFF.50491.1"; FPKM "17.1268661351"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "36.903268"; cov
"1.094595";
+chr13 Cufflinks exon 8849862 8849935 1000 . . gene_id "CUFF.50491";
transcript_id "CUFF.50491.1"; exon_number "1"; FPKM
"17.1268661351"; frac "1.000000"; conf_lo "0.000000";
conf_hi "36.903268"; cov "1.094595";
+chr13 Cufflinks transcript 8850038 8850347 1000 . . gene_id "CUFF.50493";
transcript_id "CUFF.50493.1"; FPKM "9.5394802774"; frac
"1.000000"; conf_lo "2.328311"; conf_hi "16.750650"; cov
"0.609677";
+chr13 Cufflinks exon 8850038 8850347 1000 . . gene_id "CUFF.50493";
transcript_id "CUFF.50493.1"; exon_number "1"; FPKM
"9.5394802774"; frac "1.000000"; conf_lo "2.328311"; conf_hi
"16.750650"; cov "0.609677";
+chr13 Cufflinks transcript 8864952 8864979 1000 . . gene_id "CUFF.50495";
transcript_id "CUFF.50495.1"; FPKM "75.4397674996"; frac
"1.000000"; conf_lo "7.964388"; conf_hi "142.915147"; cov
"4.821429";
+chr13 Cufflinks exon 8864952 8864979 1000 . . gene_id "CUFF.50495";
transcript_id "CUFF.50495.1"; exon_number "1"; FPKM
"75.4397674996"; frac "1.000000"; conf_lo "7.964388";
conf_hi "142.915147"; cov "4.821429";
+chr13 Cufflinks transcript 8855128 8864773 1000 - . gene_id "CUFF.50497";
transcript_id "CUFF.50497.1"; FPKM "6.4009499697"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "19.202850"; cov
"0.409091";
+chr13 Cufflinks exon 8855128 8855158 1000 - . gene_id "CUFF.50497";
transcript_id "CUFF.50497.1"; exon_number "1"; FPKM
"6.4009499697"; frac "1.000000"; conf_lo "0.000000"; conf_hi
"19.202850"; cov "0.409091";
+chr13 Cufflinks exon 8864739 8864773 1000 - . gene_id "CUFF.50497";
transcript_id "CUFF.50497.1"; exon_number "2"; FPKM
"6.4009499697"; frac "1.000000"; conf_lo "0.000000"; conf_hi
"19.202850"; cov "0.409091";
+chr13 Cufflinks transcript 8965678 8965704 1000 . . gene_id "CUFF.50499";
transcript_id "CUFF.50499.1"; FPKM "31.2935331850"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov
"2.000000";
+chr13 Cufflinks exon 8965678 8965704 1000 . . gene_id "CUFF.50499";
transcript_id "CUFF.50499.1"; exon_number "1"; FPKM
"31.2935331850"; frac "1.000000"; conf_lo "0.000000";
conf_hi "75.549272"; cov "2.000000";
+chr13 Cufflinks transcript 8972036 8972065 1000 . . gene_id "CUFF.50501";
transcript_id "CUFF.50501.1"; FPKM "112.6567194661"; frac
"1.000000"; conf_lo "32.996389"; conf_hi "192.317050"; cov
"7.200000";
+chr13 Cufflinks exon 8972036 8972065 1000 . . gene_id "CUFF.50501";
transcript_id "CUFF.50501.1"; exon_number "1"; FPKM
"112.6567194661"; frac "1.000000"; conf_lo "32.996389";
conf_hi "192.317050"; cov "7.200000";
+chr13 Cufflinks transcript 9133705 9133859 1000 . . gene_id "CUFF.50503";
transcript_id "CUFF.50503.1"; FPKM "8.1766973806"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "17.618334"; cov
"0.522581";
+chr13 Cufflinks exon 9133705 9133859 1000 . . gene_id "CUFF.50503";
transcript_id "CUFF.50503.1"; exon_number "1"; FPKM
"8.1766973806"; frac "1.000000"; conf_lo "0.000000"; conf_hi
"17.618334"; cov "0.522581";
+chr13 Cufflinks transcript 9134178 9134256 1000 . . gene_id "CUFF.50505";
transcript_id "CUFF.50505.1"; FPKM "10.6952581772"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "25.820637"; cov
"0.683544";
+chr13 Cufflinks exon 9134178 9134256 1000 . . gene_id "CUFF.50505";
transcript_id "CUFF.50505.1"; exon_number "1"; FPKM
"10.6952581772"; frac "1.000000"; conf_lo "0.000000";
conf_hi "25.820637"; cov "0.683544";
+chr13 Cufflinks transcript 9272120 9272153 1000 . . gene_id "CUFF.50507";
transcript_id "CUFF.50507.1"; FPKM "24.8212432986"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "59.944638"; cov
"1.586350";
+chr13 Cufflinks exon 9272120 9272153 1000 . . gene_id "CUFF.50507";
transcript_id "CUFF.50507.1"; exon_number "1"; FPKM
"24.8212432986"; frac "1.000000"; conf_lo "0.000000";
conf_hi "59.944638"; cov "1.586350";
+chr13 Cufflinks transcript 9169898 9172437 1000 + . gene_id "CUFF.50509";
transcript_id "CUFF.50509.1"; FPKM "41.4918721248"; frac
"1.000000"; conf_lo "16.471332"; conf_hi "66.512412"; cov
"2.651786";
+chr13 Cufflinks exon 9169898 9169928 1000 + . gene_id "CUFF.50509";
transcript_id "CUFF.50509.1"; exon_number "1"; FPKM
"41.4918721248"; frac "1.000000"; conf_lo "16.471332";
conf_hi "66.512412"; cov "2.651786";
+chr13 Cufflinks exon 9172357 9172437 1000 + . gene_id "CUFF.50509";
transcript_id "CUFF.50509.1"; exon_number "2"; FPKM
"41.4918721248"; frac "1.000000"; conf_lo "16.471332";
conf_hi "66.512412"; cov "2.651786";
+chr13 Cufflinks transcript 9171841 9172220 1000 . . gene_id "CUFF.50511";
transcript_id "CUFF.50511.1"; FPKM "108.9509063258"; frac
"1.000000"; conf_lo "86.939499"; conf_hi "130.962313"; cov
"6.963158";
+chr13 Cufflinks exon 9171841 9172220 1000 . . gene_id "CUFF.50511";
transcript_id "CUFF.50511.1"; exon_number "1"; FPKM
"108.9509063258"; frac "1.000000"; conf_lo "86.939499";
conf_hi "130.962313"; cov "6.963158";
+chr13 Cufflinks transcript 9172647 9173652 1000 . . gene_id "CUFF.50513";
transcript_id "CUFF.50513.1"; FPKM "111.9143215254"; frac
"1.000000"; conf_lo "98.203357"; conf_hi "125.625287"; cov
"7.152553";
+chr13 Cufflinks exon 9172647 9173652 1000 . . gene_id "CUFF.50513";
transcript_id "CUFF.50513.1"; exon_number "1"; FPKM
"111.9143215254"; frac "1.000000"; conf_lo "98.203357";
conf_hi "125.625287"; cov "7.152553";
+chr13 Cufflinks transcript 9277893 9277953 1000 . . gene_id "CUFF.50515";
transcript_id "CUFF.50515.1"; FPKM "13.8512359999"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "33.439842"; cov
"0.885246";
+chr13 Cufflinks exon 9277893 9277953 1000 . . gene_id "CUFF.50515";
transcript_id "CUFF.50515.1"; exon_number "1"; FPKM
"13.8512359999"; frac "1.000000"; conf_lo "0.000000";
conf_hi "33.439842"; cov "0.885246";
+chr13 Cufflinks transcript 9278033 9278094 1000 . . gene_id "CUFF.50517";
transcript_id "CUFF.50517.1"; FPKM "13.6278289677"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "32.900490"; cov
"0.870968";
+chr13 Cufflinks exon 9278033 9278094 1000 . . gene_id "CUFF.50517";
transcript_id "CUFF.50517.1"; exon_number "1"; FPKM
"13.6278289677"; frac "1.000000"; conf_lo "0.000000";
conf_hi "32.900490"; cov "0.870968";
+chr13 Cufflinks transcript 9278482 9278551 1000 . . gene_id "CUFF.50519";
transcript_id "CUFF.50519.1"; FPKM "18.1055441999"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "39.012026"; cov
"1.157143";
+chr13 Cufflinks exon 9278482 9278551 1000 . . gene_id "CUFF.50519";
transcript_id "CUFF.50519.1"; exon_number "1"; FPKM
"18.1055441999"; frac "1.000000"; conf_lo "0.000000";
conf_hi "39.012026"; cov "1.157143";
+chr13 Cufflinks transcript 9278167 9278308 1000 . . gene_id "CUFF.50521";
transcript_id "CUFF.50521.1"; FPKM "17.8505365351"; frac
"1.000000"; conf_lo "3.275634"; conf_hi "32.425439"; cov
"1.140845";
+chr13 Cufflinks exon 9278167 9278308 1000 . . gene_id "CUFF.50521";
transcript_id "CUFF.50521.1"; exon_number "1"; FPKM
"17.8505365351"; frac "1.000000"; conf_lo "3.275634";
conf_hi "32.425439"; cov "1.140845";
+chr13 Cufflinks transcript 9346823 9346849 1000 . . gene_id "CUFF.50523";
transcript_id "CUFF.50523.1"; FPKM "31.2935331850"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov
"2.000000";
+chr13 Cufflinks exon 9346823 9346849 1000 . . gene_id "CUFF.50523";
transcript_id "CUFF.50523.1"; exon_number "1"; FPKM
"31.2935331850"; frac "1.000000"; conf_lo "0.000000";
conf_hi "75.549272"; cov "2.000000";
+chr13 Cufflinks transcript 9373600 9373693 1000 . . gene_id "CUFF.50525";
transcript_id "CUFF.50525.1"; FPKM "8.9885680425"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "21.700323"; cov
"0.574468";
+chr13 Cufflinks exon 9373600 9373693 1000 . . gene_id "CUFF.50525";
transcript_id "CUFF.50525.1"; exon_number "1"; FPKM
"8.9885680425"; frac "1.000000"; conf_lo "0.000000"; conf_hi
"21.700323"; cov "0.574468";
+chr13 Cufflinks transcript 9353602 9373527 1000 - . gene_id "CUFF.50527";
transcript_id "CUFF.50527.1"; FPKM "16.2485653076"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "35.010792"; cov
"1.038462";
+chr13 Cufflinks exon 9353602 9353648 1000 - . gene_id "CUFF.50527";
transcript_id "CUFF.50527.1"; exon_number "1"; FPKM
"16.2485653076"; frac "1.000000"; conf_lo "0.000000";
conf_hi "35.010792"; cov "1.038462";
+chr13 Cufflinks exon 9373497 9373527 1000 - . gene_id "CUFF.50527";
transcript_id "CUFF.50527.1"; exon_number "2"; FPKM
"16.2485653076"; frac "1.000000"; conf_lo "0.000000";
conf_hi "35.010792"; cov "1.038462";
+chr13 Cufflinks transcript 9386521 9386547 1000 . . gene_id "CUFF.50529";
transcript_id "CUFF.50529.1"; FPKM "31.2935331850"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov
"2.000000";
+chr13 Cufflinks exon 9386521 9386547 1000 . . gene_id "CUFF.50529";
transcript_id "CUFF.50529.1"; exon_number "1"; FPKM
"31.2935331850"; frac "1.000000"; conf_lo "0.000000";
conf_hi "75.549272"; cov "2.000000";
+chr13 Cufflinks transcript 9391996 9392202 1000 . . gene_id "CUFF.50531";
transcript_id "CUFF.50531.1"; FPKM "12.2404495852"; frac
"1.000000"; conf_lo "2.244186"; conf_hi "22.236713"; cov
"0.782299";
+chr13 Cufflinks exon 9391996 9392202 1000 . . gene_id "CUFF.50531";
transcript_id "CUFF.50531.1"; exon_number "1"; FPKM
"12.2404495852"; frac "1.000000"; conf_lo "2.244186";
conf_hi "22.236713"; cov "0.782299";
+chr13 Cufflinks transcript 9392422 9392467 1000 . . gene_id "CUFF.50533";
transcript_id "CUFF.50533.1"; FPKM "9.1839716956"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "27.551915"; cov
"0.586957";
+chr13 Cufflinks exon 9392422 9392467 1000 . . gene_id "CUFF.50533";
transcript_id "CUFF.50533.1"; exon_number "1"; FPKM
"9.1839716956"; frac "1.000000"; conf_lo "0.000000"; conf_hi
"27.551915"; cov "0.586957";
+chr13 Cufflinks transcript 9392265 9392321 1000 . . gene_id "CUFF.50535";
transcript_id "CUFF.50535.1"; FPKM "14.8232525613"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "35.786497"; cov
"0.947368";
+chr13 Cufflinks exon 9392265 9392321 1000 . . gene_id "CUFF.50535";
transcript_id "CUFF.50535.1"; exon_number "1"; FPKM
"14.8232525613"; frac "1.000000"; conf_lo "0.000000";
conf_hi "35.786497"; cov "0.947368";
+chr13 Cufflinks transcript 9392577 9392603 1000 . . gene_id "CUFF.50537";
transcript_id "CUFF.50537.1"; FPKM "31.2935331850"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov
"2.000000";
+chr13 Cufflinks exon 9392577 9392603 1000 . . gene_id "CUFF.50537";
transcript_id "CUFF.50537.1"; exon_number "1"; FPKM
"31.2935331850"; frac "1.000000"; conf_lo "0.000000";
conf_hi "75.549272"; cov "2.000000";
+chr13 Cufflinks transcript 9396631 9396825 1000 . . gene_id "CUFF.50539";
transcript_id "CUFF.50539.1"; FPKM "8.6659014974"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "17.331803"; cov
"0.553846";
+chr13 Cufflinks exon 9396631 9396825 1000 . . gene_id "CUFF.50539";
transcript_id "CUFF.50539.1"; exon_number "1"; FPKM
"8.6659014974"; frac "1.000000"; conf_lo "0.000000"; conf_hi
"17.331803"; cov "0.553846";
+chr13 Cufflinks transcript 9397263 9397434 1000 . . gene_id "CUFF.50541";
transcript_id "CUFF.50541.1"; FPKM "17.1932493371"; frac
"1.000000"; conf_lo "4.196374"; conf_hi "30.190124"; cov
"1.098837";
+chr13 Cufflinks exon 9397263 9397434 1000 . . gene_id "CUFF.50541";
transcript_id "CUFF.50541.1"; exon_number "1"; FPKM
"17.1932493371"; frac "1.000000"; conf_lo "4.196374";
conf_hi "30.190124"; cov "1.098837";
+chr13 Cufflinks transcript 9398210 9398294 1000 . . gene_id "CUFF.50543";
transcript_id "CUFF.50543.1"; FPKM "9.9402987764"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "23.998004"; cov
"0.635294";
+chr13 Cufflinks exon 9398210 9398294 1000 . . gene_id "CUFF.50543";
transcript_id "CUFF.50543.1"; exon_number "1"; FPKM
"9.9402987764"; frac "1.000000"; conf_lo "0.000000"; conf_hi
"23.998004"; cov "0.635294";
+chr13 Cufflinks transcript 9406013 9406051 1000 . . gene_id "CUFF.50545";
transcript_id "CUFF.50545.1"; FPKM "10.8323768717"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "32.497131"; cov
"0.692308";
+chr13 Cufflinks exon 9406013 9406051 1000 . . gene_id "CUFF.50545";
transcript_id "CUFF.50545.1"; exon_number "1"; FPKM
"10.8323768717"; frac "1.000000"; conf_lo "0.000000";
conf_hi "32.497131"; cov "0.692308";
+chr13 Cufflinks transcript 9413644 9413670 1000 . . gene_id "CUFF.50547";
transcript_id "CUFF.50547.1"; FPKM "31.2935331850"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov
"2.000000";
+chr13 Cufflinks exon 9413644 9413670 1000 . . gene_id "CUFF.50547";
transcript_id "CUFF.50547.1"; exon_number "1"; FPKM
"31.2935331850"; frac "1.000000"; conf_lo "0.000000";
conf_hi "75.549272"; cov "2.000000";
+chr13 Cufflinks transcript 9414053 9414143 1000 . . gene_id "CUFF.50549";
transcript_id "CUFF.50549.1"; FPKM "9.2848944615"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "22.415718"; cov
"0.593407";
+chr13 Cufflinks exon 9414053 9414143 1000 . . gene_id "CUFF.50549";
transcript_id "CUFF.50549.1"; exon_number "1"; FPKM
"9.2848944615"; frac "1.000000"; conf_lo "0.000000"; conf_hi
"22.415718"; cov "0.593407";
+chr13 Cufflinks transcript 9415960 9416015 1000 . . gene_id "CUFF.50551";
transcript_id "CUFF.50551.1"; FPKM "15.0879534999"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "36.425542"; cov
"0.964286";
+chr13 Cufflinks exon 9415960 9416015 1000 . . gene_id "CUFF.50551";
transcript_id "CUFF.50551.1"; exon_number "1"; FPKM
"15.0879534999"; frac "1.000000"; conf_lo "0.000000";
conf_hi "36.425542"; cov "0.964286";
+chr13 Cufflinks transcript 9442325 9442351 1000 . . gene_id "CUFF.50553";
transcript_id "CUFF.50553.1"; FPKM "31.2935331850"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov
"2.000000";
+chr13 Cufflinks exon 9442325 9442351 1000 . . gene_id "CUFF.50553";
transcript_id "CUFF.50553.1"; exon_number "1"; FPKM
"31.2935331850"; frac "1.000000"; conf_lo "0.000000";
conf_hi "75.549272"; cov "2.000000";
+chr13 Cufflinks transcript 9517895 9517921 1000 . . gene_id "CUFF.50555";
transcript_id "CUFF.50555.1"; FPKM "31.2935331850"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov
"2.000000";
+chr13 Cufflinks exon 9517895 9517921 1000 . . gene_id "CUFF.50555";
transcript_id "CUFF.50555.1"; exon_number "1"; FPKM
"31.2935331850"; frac "1.000000"; conf_lo "0.000000";
conf_hi "75.549272"; cov "2.000000";
+chr13 Cufflinks transcript 9584154 9584180 1000 . . gene_id "CUFF.50558";
transcript_id "CUFF.50558.1"; FPKM "46.9402997776"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "101.142289"; cov
"3.000000";
+chr13 Cufflinks exon 9584154 9584180 1000 . . gene_id "CUFF.50558";
transcript_id "CUFF.50558.1"; exon_number "1"; FPKM
"46.9402997776"; frac "1.000000"; conf_lo "0.000000";
conf_hi "101.142289"; cov "3.000000";
+chr13 Cufflinks transcript 9583821 9583888 1000 . . gene_id "CUFF.50557";
transcript_id "CUFF.50557.1"; FPKM "12.4253734705"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "29.997505"; cov
"0.794118";
+chr13 Cufflinks exon 9583821 9583888 1000 . . gene_id "CUFF.50557";
transcript_id "CUFF.50557.1"; exon_number "1"; FPKM
"12.4253734705"; frac "1.000000"; conf_lo "0.000000";
conf_hi "29.997505"; cov "0.794118";
+chr13 Cufflinks transcript 9585768 9585937 1000 . . gene_id "CUFF.50561";
transcript_id "CUFF.50561.1"; FPKM "9.9402987764"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "19.880598"; cov
"0.635294";
+chr13 Cufflinks exon 9585768 9585937 1000 . . gene_id "CUFF.50561";
transcript_id "CUFF.50561.1"; exon_number "1"; FPKM
"9.9402987764"; frac "1.000000"; conf_lo "0.000000"; conf_hi
"19.880598"; cov "0.635294";
+chr13 Cufflinks transcript 9586173 9593034 1000 - . gene_id "CUFF.50563";
transcript_id "CUFF.50563.1"; FPKM "10.3039682439"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "24.875980"; cov
"0.658537";
+chr13 Cufflinks exon 9586173 9586218 1000 - . gene_id "CUFF.50563";
transcript_id "CUFF.50563.1"; exon_number "1"; FPKM
"10.3039682439"; frac "1.000000"; conf_lo "0.000000";
conf_hi "24.875980"; cov "0.658537";
+chr13 Cufflinks exon 9592999 9593034 1000 - . gene_id "CUFF.50563";
transcript_id "CUFF.50563.1"; exon_number "2"; FPKM
"10.3039682439"; frac "1.000000"; conf_lo "0.000000";
conf_hi "24.875980"; cov "0.658537";
+chr13 Cufflinks transcript 9609217 9609243 1000 . . gene_id "CUFF.50566";
transcript_id "CUFF.50566.1"; FPKM "31.2935331850"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov
"2.000000";
+chr13 Cufflinks exon 9609217 9609243 1000 . . gene_id "CUFF.50566";
transcript_id "CUFF.50566.1"; exon_number "1"; FPKM
"31.2935331850"; frac "1.000000"; conf_lo "0.000000";
conf_hi "75.549272"; cov "2.000000";
+chr13 Cufflinks transcript 9607682 9607717 1000 . . gene_id "CUFF.50565";
transcript_id "CUFF.50565.1"; FPKM "23.4701498888"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "56.661954"; cov
"1.500000";
+chr13 Cufflinks exon 9607682 9607717 1000 . . gene_id "CUFF.50565";
transcript_id "CUFF.50565.1"; exon_number "1"; FPKM
"23.4701498888"; frac "1.000000"; conf_lo "0.000000";
conf_hi "56.661954"; cov "1.500000";
+chr13 Cufflinks transcript 9678669 9678695 1000 . . gene_id "CUFF.50569";
transcript_id "CUFF.50569.1"; FPKM "31.2935331850"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov
"2.000000";
+chr13 Cufflinks exon 9678669 9678695 1000 . . gene_id "CUFF.50569";
transcript_id "CUFF.50569.1"; exon_number "1"; FPKM
"31.2935331850"; frac "1.000000"; conf_lo "0.000000";
conf_hi "75.549272"; cov "2.000000";
+chr13 Cufflinks transcript 9667710 9667736 1000 . . gene_id "CUFF.50571";
transcript_id "CUFF.50571.1"; FPKM "140.7837465978"; frac
"1.000000"; conf_lo "46.915532"; conf_hi "234.651961"; cov
"8.997626";
+chr13 Cufflinks exon 9667710 9667736 1000 . . gene_id "CUFF.50571";
transcript_id "CUFF.50571.1"; exon_number "1"; FPKM
"140.7837465978"; frac "1.000000"; conf_lo "46.915532";
conf_hi "234.651961"; cov "8.997626";
+chr13 Cufflinks transcript 9667815 9668061 1000 . . gene_id "CUFF.50573";
transcript_id "CUFF.50573.1"; FPKM "87.1763440808"; frac
"1.000000"; conf_lo "62.754693"; conf_hi "111.597996"; cov
"5.571525";
+chr13 Cufflinks exon 9667815 9668061 1000 . . gene_id "CUFF.50573";
transcript_id "CUFF.50573.1"; exon_number "1"; FPKM
"87.1763440808"; frac "1.000000"; conf_lo "62.754693";
conf_hi "111.597996"; cov "5.571525";
+chr13 Cufflinks transcript 9668143 9668170 1000 . . gene_id "CUFF.50575";
transcript_id "CUFF.50575.1"; FPKM "82.8583537693"; frac
"1.000000"; conf_lo "12.143066"; conf_hi "153.573642"; cov
"5.295558";
+chr13 Cufflinks exon 9668143 9668170 1000 . . gene_id "CUFF.50575";
transcript_id "CUFF.50575.1"; exon_number "1"; FPKM
"82.8583537693"; frac "1.000000"; conf_lo "12.143066";
conf_hi "153.573642"; cov "5.295558";
+chr13 Cufflinks transcript 9688931 9688970 1000 . . gene_id "CUFF.50577";
transcript_id "CUFF.50577.1"; FPKM "21.1231348999"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "50.995759"; cov
"1.350000";
+chr13 Cufflinks exon 9688931 9688970 1000 . . gene_id "CUFF.50577";
transcript_id "CUFF.50577.1"; exon_number "1"; FPKM
"21.1231348999"; frac "1.000000"; conf_lo "0.000000";
conf_hi "50.995759"; cov "1.350000";
+chr13 Cufflinks transcript 9684078 9685570 1000 . . gene_id "CUFF.50579";
transcript_id "CUFF.50579.1"; FPKM "107.1082431700"; frac
"1.000000"; conf_lo "96.097777"; conf_hi "118.118710"; cov
"6.845392";
+chr13 Cufflinks exon 9684078 9685570 1000 . . gene_id "CUFF.50579";
transcript_id "CUFF.50579.1"; exon_number "1"; FPKM
"107.1082431700"; frac "1.000000"; conf_lo "96.097777";
conf_hi "118.118710"; cov "6.845392";
+chr13 Cufflinks transcript 9690151 9690234 1000 . . gene_id "CUFF.50581";
transcript_id "CUFF.50581.1"; FPKM "10.0586356666"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "24.283695"; cov
"0.642857";
+chr13 Cufflinks exon 9690151 9690234 1000 . . gene_id "CUFF.50581";
transcript_id "CUFF.50581.1"; exon_number "1"; FPKM
"10.0586356666"; frac "1.000000"; conf_lo "0.000000";
conf_hi "24.283695"; cov "0.642857";
+chr13 Cufflinks transcript 9694461 9694537 1000 . . gene_id "CUFF.50583";
transcript_id "CUFF.50583.1"; FPKM "16.4595856363"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "35.465478"; cov
"1.051948";
+chr13 Cufflinks exon 9694461 9694537 1000 . . gene_id "CUFF.50583";
transcript_id "CUFF.50583.1"; exon_number "1"; FPKM
"16.4595856363"; frac "1.000000"; conf_lo "0.000000";
conf_hi "35.465478"; cov "1.051948";
+chr13 Cufflinks transcript 9696900 9696976 1000 . . gene_id "CUFF.50585";
transcript_id "CUFF.50585.1"; FPKM "10.9730570909"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "26.491303"; cov
"0.701299";
+chr13 Cufflinks exon 9696900 9696976 1000 . . gene_id "CUFF.50585";
transcript_id "CUFF.50585.1"; exon_number "1"; FPKM
"10.9730570909"; frac "1.000000"; conf_lo "0.000000";
conf_hi "26.491303"; cov "0.701299";
+chr13 Cufflinks transcript 9725686 9725787 1000 . . gene_id "CUFF.50587";
transcript_id "CUFF.50587.1"; FPKM "12.4253734705"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "26.772959"; cov
"0.794118";
+chr13 Cufflinks exon 9725686 9725787 1000 . . gene_id "CUFF.50587";
transcript_id "CUFF.50587.1"; exon_number "1"; FPKM
"12.4253734705"; frac "1.000000"; conf_lo "0.000000";
conf_hi "26.772959"; cov "0.794118";
+chr13 Cufflinks transcript 9725935 9726047 1000 . . gene_id "CUFF.50589";
transcript_id "CUFF.50589.1"; FPKM "11.2158238407"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "24.166742"; cov
"0.716814";
+chr13 Cufflinks exon 9725935 9726047 1000 . . gene_id "CUFF.50589";
transcript_id "CUFF.50589.1"; exon_number "1"; FPKM
"11.2158238407"; frac "1.000000"; conf_lo "0.000000";
conf_hi "24.166742"; cov "0.716814";
+chr13 Cufflinks transcript 9739796 9739868 1000 . . gene_id "CUFF.50591";
transcript_id "CUFF.50591.1"; FPKM "11.5743204931"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "27.942882"; cov
"0.739726";
+chr13 Cufflinks exon 9739796 9739868 1000 . . gene_id "CUFF.50591";
transcript_id "CUFF.50591.1"; exon_number "1"; FPKM
"11.5743204931"; frac "1.000000"; conf_lo "0.000000";
conf_hi "27.942882"; cov "0.739726";
+chr13 Cufflinks transcript 9740164 9740202 1000 . . gene_id "CUFF.50593";
transcript_id "CUFF.50593.1"; FPKM "21.6647537435"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "52.303342"; cov
"1.384615";
+chr13 Cufflinks exon 9740164 9740202 1000 . . gene_id "CUFF.50593";
transcript_id "CUFF.50593.1"; exon_number "1"; FPKM
"21.6647537435"; frac "1.000000"; conf_lo "0.000000";
conf_hi "52.303342"; cov "1.384615";
+chr13 Cufflinks transcript 9740296 9740330 1000 . . gene_id "CUFF.50595";
transcript_id "CUFF.50595.1"; FPKM "48.2814511998"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "96.562902"; cov
"3.085714";
+chr13 Cufflinks exon 9740296 9740330 1000 . . gene_id "CUFF.50595";
transcript_id "CUFF.50595.1"; exon_number "1"; FPKM
"48.2814511998"; frac "1.000000"; conf_lo "0.000000";
conf_hi "96.562902"; cov "3.085714";
+chr13 Cufflinks transcript 9741046 9741127 1000 . . gene_id "CUFF.50597";
transcript_id "CUFF.50597.1"; FPKM "10.3039682439"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "24.875980"; cov
"0.658537";
+chr13 Cufflinks exon 9741046 9741127 1000 . . gene_id "CUFF.50597";
transcript_id "CUFF.50597.1"; exon_number "1"; FPKM
"10.3039682439"; frac "1.000000"; conf_lo "0.000000";
conf_hi "24.875980"; cov "0.658537";
+chr13 Cufflinks transcript 9741590 9741694 1000 . . gene_id "CUFF.50599";
transcript_id "CUFF.50599.1"; FPKM "12.0703627999"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "26.008017"; cov
"0.771429";
+chr13 Cufflinks exon 9741590 9741694 1000 . . gene_id "CUFF.50599";
transcript_id "CUFF.50599.1"; exon_number "1"; FPKM
"12.0703627999"; frac "1.000000"; conf_lo "0.000000";
conf_hi "26.008017"; cov "0.771429";
+chr13 Cufflinks transcript 9741399 9741517 1000 . . gene_id "CUFF.50601";
transcript_id "CUFF.50601.1"; FPKM "24.8507469411"; frac
"1.000000"; conf_lo "6.065348"; conf_hi "43.636146"; cov
"1.588235";
+chr13 Cufflinks exon 9741399 9741517 1000 . . gene_id "CUFF.50601";
transcript_id "CUFF.50601.1"; exon_number "1"; FPKM
"24.8507469411"; frac "1.000000"; conf_lo "6.065348";
conf_hi "43.636146"; cov "1.588235";
+chr13 Cufflinks transcript 9868979 9869072 1000 . . gene_id "CUFF.50603";
transcript_id "CUFF.50603.1"; FPKM "13.4828520638"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "29.051509"; cov
"0.861702";
+chr13 Cufflinks exon 9868979 9869072 1000 . . gene_id "CUFF.50603";
transcript_id "CUFF.50603.1"; exon_number "1"; FPKM
"13.4828520638"; frac "1.000000"; conf_lo "0.000000";
conf_hi "29.051509"; cov "0.861702";
+chr13 Cufflinks transcript 9872853 9872934 1000 . . gene_id "CUFF.50605";
transcript_id "CUFF.50605.1"; FPKM "15.4559523658"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "33.302949"; cov
"0.987805";
+chr13 Cufflinks exon 9872853 9872934 1000 . . gene_id "CUFF.50605";
transcript_id "CUFF.50605.1"; exon_number "1"; FPKM
"15.4559523658"; frac "1.000000"; conf_lo "0.000000";
conf_hi "33.302949"; cov "0.987805";
+chr13 Cufflinks transcript 9874731 9874997 1000 . . gene_id "CUFF.50607";
transcript_id "CUFF.50607.1"; FPKM "12.6580583670"; frac
"1.000000"; conf_lo "3.707459"; conf_hi "21.608657"; cov
"0.808989";
+chr13 Cufflinks exon 9874731 9874997 1000 . . gene_id "CUFF.50607";
transcript_id "CUFF.50607.1"; exon_number "1"; FPKM
"12.6580583670"; frac "1.000000"; conf_lo "3.707459";
conf_hi "21.608657"; cov "0.808989";
+chr13 Cufflinks transcript 9875128 9875201 1000 . . gene_id "CUFF.50609";
transcript_id "CUFF.50609.1"; FPKM "22.8358215134"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "45.671643"; cov
"1.459459";
+chr13 Cufflinks exon 9875128 9875201 1000 . . gene_id "CUFF.50609";
transcript_id "CUFF.50609.1"; exon_number "1"; FPKM
"22.8358215134"; frac "1.000000"; conf_lo "0.000000";
conf_hi "45.671643"; cov "1.459459";
+chr13 Cufflinks transcript 9875323 9875349 1000 . . gene_id "CUFF.50611";
transcript_id "CUFF.50611.1"; FPKM "31.2935331850"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov
"2.000000";
+chr13 Cufflinks exon 9875323 9875349 1000 . . gene_id "CUFF.50611";
transcript_id "CUFF.50611.1"; exon_number "1"; FPKM
"31.2935331850"; frac "1.000000"; conf_lo "0.000000";
conf_hi "75.549272"; cov "2.000000";
+chr13 Cufflinks transcript 9875425 9875480 1000 . . gene_id "CUFF.50613";
transcript_id "CUFF.50613.1"; FPKM "15.0879534999"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "36.425542"; cov
"0.964286";
+chr13 Cufflinks exon 9875425 9875480 1000 . . gene_id "CUFF.50613";
transcript_id "CUFF.50613.1"; exon_number "1"; FPKM
"15.0879534999"; frac "1.000000"; conf_lo "0.000000";
conf_hi "36.425542"; cov "0.964286";
+chr13 Cufflinks transcript 9876121 9876172 1000 . . gene_id "CUFF.50615";
transcript_id "CUFF.50615.1"; FPKM "16.2485653076"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "39.227507"; cov
"1.038462";
+chr13 Cufflinks exon 9876121 9876172 1000 . . gene_id "CUFF.50615";
transcript_id "CUFF.50615.1"; exon_number "1"; FPKM
"16.2485653076"; frac "1.000000"; conf_lo "0.000000";
conf_hi "39.227507"; cov "1.038462";
+chr13 Cufflinks transcript 9969155 9969237 1000 . . gene_id "CUFF.50617";
transcript_id "CUFF.50617.1"; FPKM "8.6756763125"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "21.966038"; cov
"0.554471";
+chr13 Cufflinks exon 9969155 9969237 1000 . . gene_id "CUFF.50617";
transcript_id "CUFF.50617.1"; exon_number "1"; FPKM
"8.6756763125"; frac "1.000000"; conf_lo "0.000000"; conf_hi
"21.966038"; cov "0.554471";
+chr13 Cufflinks transcript 9986765 9986791 1000 . . gene_id "CUFF.50619";
transcript_id "CUFF.50619.1"; FPKM "15.6467665925"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov
"1.000000";
+chr13 Cufflinks exon 9986765 9986791 1000 . . gene_id "CUFF.50619";
transcript_id "CUFF.50619.1"; exon_number "1"; FPKM
"15.6467665925"; frac "1.000000"; conf_lo "0.000000";
conf_hi "46.940300"; cov "1.000000";
+chr13 Cufflinks transcript 9987242 9987567 1000 . . gene_id "CUFF.50621";
transcript_id "CUFF.50621.1"; FPKM "10.3671827730"; frac
"1.000000"; conf_lo "3.036478"; conf_hi "17.697888"; cov
"0.662577";
+chr13 Cufflinks exon 9987242 9987567 1000 . . gene_id "CUFF.50621";
transcript_id "CUFF.50621.1"; exon_number "1"; FPKM
"10.3671827730"; frac "1.000000"; conf_lo "3.036478";
conf_hi "17.697888"; cov "0.662577";
+chr13 Cufflinks transcript 10010160 10010265 1000 . . gene_id "CUFF.50623";
transcript_id "CUFF.50623.1"; FPKM "11.9564914528"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "25.762659"; cov
"0.764151";
+chr13 Cufflinks exon 10010160 10010265 1000 . . gene_id "CUFF.50623";
transcript_id "CUFF.50623.1"; exon_number "1"; FPKM
"11.9564914528"; frac "1.000000"; conf_lo "0.000000";
conf_hi "25.762659"; cov "0.764151";
+chr13 Cufflinks transcript 10010497 10010523 1000 . . gene_id "CUFF.50625";
transcript_id "CUFF.50625.1"; FPKM "31.2935331850"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov
"2.000000";
+chr13 Cufflinks exon 10010497 10010523 1000 . . gene_id "CUFF.50625";
transcript_id "CUFF.50625.1"; exon_number "1"; FPKM
"31.2935331850"; frac "1.000000"; conf_lo "0.000000";
conf_hi "75.549272"; cov "2.000000";
+chr13 Cufflinks transcript 10012021 10012167 1000 . . gene_id "CUFF.50627";
transcript_id "CUFF.50627.1"; FPKM "11.4955836190"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "22.991167"; cov
"0.734694";
+chr13 Cufflinks exon 10012021 10012167 1000 . . gene_id "CUFF.50627";
transcript_id "CUFF.50627.1"; exon_number "1"; FPKM
"11.4955836190"; frac "1.000000"; conf_lo "0.000000";
conf_hi "22.991167"; cov "0.734694";
+chr13 Cufflinks transcript 10019657 10019683 1000 . . gene_id "CUFF.50629";
transcript_id "CUFF.50629.1"; FPKM "46.9402997776"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "101.142289"; cov
"3.000000";
+chr13 Cufflinks exon 10019657 10019683 1000 . . gene_id "CUFF.50629";
transcript_id "CUFF.50629.1"; exon_number "1"; FPKM
"46.9402997776"; frac "1.000000"; conf_lo "0.000000";
conf_hi "101.142289"; cov "3.000000";
+chr13 Cufflinks transcript 10024965 10025028 1000 . . gene_id "CUFF.50631";
transcript_id "CUFF.50631.1"; FPKM "13.2019593124"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "31.872349"; cov
"0.843750";
+chr13 Cufflinks exon 10024965 10025028 1000 . . gene_id "CUFF.50631";
transcript_id "CUFF.50631.1"; exon_number "1"; FPKM
"13.2019593124"; frac "1.000000"; conf_lo "0.000000";
conf_hi "31.872349"; cov "0.843750";
+chr13 Cufflinks transcript 10082104 10082206 1000 . . gene_id "CUFF.50633";
transcript_id "CUFF.50633.1"; FPKM "8.2031591844"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "19.804178"; cov
"0.524272";
+chr13 Cufflinks exon 10082104 10082206 1000 . . gene_id "CUFF.50633";
transcript_id "CUFF.50633.1"; exon_number "1"; FPKM
"8.2031591844"; frac "1.000000"; conf_lo "0.000000"; conf_hi
"19.804178"; cov "0.524272";
+chr13 Cufflinks transcript 10086419 10086446 1000 . . gene_id "CUFF.50635";
transcript_id "CUFF.50635.1"; FPKM "60.3518139997"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "120.703628"; cov
"3.857143";
+chr13 Cufflinks exon 10086419 10086446 1000 . . gene_id "CUFF.50635";
transcript_id "CUFF.50635.1"; exon_number "1"; FPKM
"60.3518139997"; frac "1.000000"; conf_lo "0.000000";
conf_hi "120.703628"; cov "3.857143";
+chr13 Cufflinks transcript 10086886 10086930 1000 . . gene_id "CUFF.50637";
transcript_id "CUFF.50637.1"; FPKM "18.7761199110"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "45.329563"; cov
"1.200000";
+chr13 Cufflinks exon 10086886 10086930 1000 . . gene_id "CUFF.50637";
transcript_id "CUFF.50637.1"; exon_number "1"; FPKM
"18.7761199110"; frac "1.000000"; conf_lo "0.000000";
conf_hi "45.329563"; cov "1.200000";
+chr13 Cufflinks transcript 10096818 10096844 1000 . . gene_id "CUFF.50639";
transcript_id "CUFF.50639.1"; FPKM "31.2935331850"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov
"2.000000";
+chr13 Cufflinks exon 10096818 10096844 1000 . . gene_id "CUFF.50639";
transcript_id "CUFF.50639.1"; exon_number "1"; FPKM
"31.2935331850"; frac "1.000000"; conf_lo "0.000000";
conf_hi "75.549272"; cov "2.000000";
+chr13 Cufflinks transcript 10111271 10111358 1000 . . gene_id "CUFF.50641";
transcript_id "CUFF.50641.1"; FPKM "9.6014249545"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "23.179890"; cov
"0.613636";
+chr13 Cufflinks exon 10111271 10111358 1000 . . gene_id "CUFF.50641";
transcript_id "CUFF.50641.1"; exon_number "1"; FPKM
"9.6014249545"; frac "1.000000"; conf_lo "0.000000"; conf_hi
"23.179890"; cov "0.613636";
+chr13 Cufflinks transcript 10182192 10182228 1000 . . gene_id "CUFF.50643";
transcript_id "CUFF.50643.1"; FPKM "34.2537322701"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "73.806535"; cov
"2.189189";
+chr13 Cufflinks exon 10182192 10182228 1000 . . gene_id "CUFF.50643";
transcript_id "CUFF.50643.1"; exon_number "1"; FPKM
"34.2537322701"; frac "1.000000"; conf_lo "0.000000";
conf_hi "73.806535"; cov "2.189189";
+chr13 Cufflinks transcript 10189009 10189035 1000 . . gene_id "CUFF.50645";
transcript_id "CUFF.50645.1"; FPKM "31.2935331850"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov
"2.000000";
+chr13 Cufflinks exon 10189009 10189035 1000 . . gene_id "CUFF.50645";
transcript_id "CUFF.50645.1"; exon_number "1"; FPKM
"31.2935331850"; frac "1.000000"; conf_lo "0.000000";
conf_hi "75.549272"; cov "2.000000";
+chr13 Cufflinks transcript 10197772 10197798 1000 . . gene_id "CUFF.50647";
transcript_id "CUFF.50647.1"; FPKM "31.2935331850"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov
"2.000000";
+chr13 Cufflinks exon 10197772 10197798 1000 . . gene_id "CUFF.50647";
transcript_id "CUFF.50647.1"; exon_number "1"; FPKM
"31.2935331850"; frac "1.000000"; conf_lo "0.000000";
conf_hi "75.549272"; cov "2.000000";
+chr13 Cufflinks transcript 10200086 10200124 1000 . . gene_id "CUFF.50649";
transcript_id "CUFF.50649.1"; FPKM "21.6647537435"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "52.303342"; cov
"1.384615";
+chr13 Cufflinks exon 10200086 10200124 1000 . . gene_id "CUFF.50649";
transcript_id "CUFF.50649.1"; exon_number "1"; FPKM
"21.6647537435"; frac "1.000000"; conf_lo "0.000000";
conf_hi "52.303342"; cov "1.384615";
+chr13 Cufflinks transcript 10213412 10213536 1000 . . gene_id "CUFF.50651";
transcript_id "CUFF.50651.1"; FPKM "13.5188063359"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "27.037613"; cov
"0.864000";
+chr13 Cufflinks exon 10213412 10213536 1000 . . gene_id "CUFF.50651";
transcript_id "CUFF.50651.1"; exon_number "1"; FPKM
"13.5188063359"; frac "1.000000"; conf_lo "0.000000";
conf_hi "27.037613"; cov "0.864000";
+chr13 Cufflinks transcript 10223893 10223941 1000 . . gene_id "CUFF.50653";
transcript_id "CUFF.50653.1"; FPKM "17.2433754285"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "41.629191"; cov
"1.102041";
+chr13 Cufflinks exon 10223893 10223941 1000 . . gene_id "CUFF.50653";
transcript_id "CUFF.50653.1"; exon_number "1"; FPKM
"17.2433754285"; frac "1.000000"; conf_lo "0.000000";
conf_hi "41.629191"; cov "1.102041";
+chr13 Cufflinks transcript 10289392 10289437 1000 . . gene_id "CUFF.50655";
transcript_id "CUFF.50655.1"; FPKM "18.3679433912"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "44.344138"; cov
"1.173913";
+chr13 Cufflinks exon 10289392 10289437 1000 . . gene_id "CUFF.50655";
transcript_id "CUFF.50655.1"; exon_number "1"; FPKM
"18.3679433912"; frac "1.000000"; conf_lo "0.000000";
conf_hi "44.344138"; cov "1.173913";
+chr13 Cufflinks transcript 10326745 10326771 1000 . . gene_id "CUFF.50657";
transcript_id "CUFF.50657.1"; FPKM "31.2935331850"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov
"2.000000";
+chr13 Cufflinks exon 10326745 10326771 1000 . . gene_id "CUFF.50657";
transcript_id "CUFF.50657.1"; exon_number "1"; FPKM
"31.2935331850"; frac "1.000000"; conf_lo "0.000000";
conf_hi "75.549272"; cov "2.000000";
+chr13 Cufflinks transcript 10346675 10346701 1000 . . gene_id "CUFF.50659";
transcript_id "CUFF.50659.1"; FPKM "31.2935331850"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov
"2.000000";
+chr13 Cufflinks exon 10346675 10346701 1000 . . gene_id "CUFF.50659";
transcript_id "CUFF.50659.1"; exon_number "1"; FPKM
"31.2935331850"; frac "1.000000"; conf_lo "0.000000";
conf_hi "75.549272"; cov "2.000000";
+chr13 Cufflinks transcript 10337071 10337097 1000 . . gene_id "CUFF.50661";
transcript_id "CUFF.50661.1"; FPKM "15.6467665925"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov
"1.000000";
+chr13 Cufflinks exon 10337071 10337097 1000 . . gene_id "CUFF.50661";
transcript_id "CUFF.50661.1"; exon_number "1"; FPKM
"15.6467665925"; frac "1.000000"; conf_lo "0.000000";
conf_hi "46.940300"; cov "1.000000";
+chr13 Cufflinks transcript 10337141 10337167 1000 . . gene_id "CUFF.50663";
transcript_id "CUFF.50663.1"; FPKM "15.6467665925"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov
"1.000000";
+chr13 Cufflinks exon 10337141 10337167 1000 . . gene_id "CUFF.50663";
transcript_id "CUFF.50663.1"; exon_number "1"; FPKM
"15.6467665925"; frac "1.000000"; conf_lo "0.000000";
conf_hi "46.940300"; cov "1.000000";
+chr13 Cufflinks transcript 10344376 10344402 1000 . . gene_id "CUFF.50665";
transcript_id "CUFF.50665.1"; FPKM "46.9402997776"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "101.142289"; cov
"3.000000";
+chr13 Cufflinks exon 10344376 10344402 1000 . . gene_id "CUFF.50665";
transcript_id "CUFF.50665.1"; exon_number "1"; FPKM
"46.9402997776"; frac "1.000000"; conf_lo "0.000000";
conf_hi "101.142289"; cov "3.000000";
+chr13 Cufflinks transcript 10344976 10345002 1000 . . gene_id "CUFF.50667";
transcript_id "CUFF.50667.1"; FPKM "15.6467665925"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov
"1.000000";
+chr13 Cufflinks exon 10344976 10345002 1000 . . gene_id "CUFF.50667";
transcript_id "CUFF.50667.1"; exon_number "1"; FPKM
"15.6467665925"; frac "1.000000"; conf_lo "0.000000";
conf_hi "46.940300"; cov "1.000000";
+chr13 Cufflinks transcript 10345008 10345034 1000 . . gene_id "CUFF.50669";
transcript_id "CUFF.50669.1"; FPKM "15.6467665925"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov
"1.000000";
+chr13 Cufflinks exon 10345008 10345034 1000 . . gene_id "CUFF.50669";
transcript_id "CUFF.50669.1"; exon_number "1"; FPKM
"15.6467665925"; frac "1.000000"; conf_lo "0.000000";
conf_hi "46.940300"; cov "1.000000";
+chr13 Cufflinks transcript 10345484 10345510 1000 . . gene_id "CUFF.50671";
transcript_id "CUFF.50671.1"; FPKM "15.6467665925"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov
"1.000000";
+chr13 Cufflinks exon 10345484 10345510 1000 . . gene_id "CUFF.50671";
transcript_id "CUFF.50671.1"; exon_number "1"; FPKM
"15.6467665925"; frac "1.000000"; conf_lo "0.000000";
conf_hi "46.940300"; cov "1.000000";
+chr13 Cufflinks transcript 10345538 10345564 1000 . . gene_id "CUFF.50673";
transcript_id "CUFF.50673.1"; FPKM "15.6467665925"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "46.940300"; cov
"1.000000";
+chr13 Cufflinks exon 10345538 10345564 1000 . . gene_id "CUFF.50673";
transcript_id "CUFF.50673.1"; exon_number "1"; FPKM
"15.6467665925"; frac "1.000000"; conf_lo "0.000000";
conf_hi "46.940300"; cov "1.000000";
--- a/tools/new_operations/subtract.xml
+++ b/tools/new_operations/subtract.xml
@@ -1,14 +1,44 @@
<tool id="gops_subtract_1"
name="Subtract"><description>the intervals of two
queries</description>
- <command interpreter="python">gops_subtract.py $input1 $input2 $output
-1
${input1.metadata.chromCol},${input1.metadata.startCol},${input1.metadata.endCol},${input1.metadata.strandCol}
-2
${input2.metadata.chromCol},${input2.metadata.startCol},${input2.metadata.endCol},${input2.metadata.strandCol}
-m $min $returntype</command>
+ <command interpreter="python">gops_subtract.py
+ #if $inputs.type == "BED":
+ $inputs.bed_input1 $inputs.bed_input2 $output
+ -1
${inputs.bed_input1.metadata.chromCol},${inputs.bed_input1.metadata.startCol},${inputs.bed_input1.metadata.endCol},${inputs.bed_input1.metadata.strandCol}
+ -2
${inputs.bed_input2.metadata.chromCol},${inputs.bed_input2.metadata.startCol},${inputs.bed_input2.metadata.endCol},${inputs.bed_input2.metadata.strandCol}
+ #else
+ $inputs.gff_input1 $inputs.gff_input2 $output
+ ## TODO: can we use metadata like above to set these columns rather than
hardcode them?
+ -1 1,4,5,7
+ -2 1,4,5,7
+ --gff
+ #end if
+ -m $min $returntype
+ </command><inputs>
- <param format="interval" name="input2" type="data"
help="Second query">
- <label>Subtract</label>
- </param>
+ <conditional name="inputs">
+ <param name="type" type="select" label="File Format
to Use">
+ <option value="BED">BED</option>
+ <option value="GFF">GFF</option>
+ </param>
+ <when value="BED">
+ <param format="interval" name="bed_input2"
type="data" help="Second query">
+ <label>Subtract</label>
+ </param>
- <param format="interval" name="input1" type="data"
help="First query">
- <label>from</label>
- </param>
+ <param format="interval" name="bed_input1"
type="data" help="First query">
+ <label>from</label>
+ </param>
+ </when>
+ <when value="GFF">
+ <param format="gff" name="gff_input2"
type="data" help="Second query">
+ <label>Subtract</label>
+ </param>
+
+ <param format="gff" name="gff_input1"
type="data" help="First query">
+ <label>from</label>
+ </param>
+ </when>
+ </conditional><param name="returntype" type="select"
label="Return" help="of the first query (see figure
below)"><option value="">Intervals with no overlap</option>
@@ -21,38 +51,56 @@
</inputs><outputs>
- <data format="input" name="output"
metadata_source="input1" />
+ <data format="input" name="output">
+ #if inputs.type == "BED":
+ metadata_source="inputs.bed_input1"
+ #else:
+ metadata_source="inputs.gff_input1"
+ #end if
+ </data></outputs><code
file="operation_filter.py"/><tests><test>
- <param name="input1" value="1.bed" />
- <param name="input2" value="2.bed" />
+ <param name="type" value="BED"/>
+ <param name="bed_input1" value="1.bed" />
+ <param name="bed_input2" value="2.bed" /><param
name="min" value="1" /><param name="returntype"
value="" /><output name="output"
file="gops-subtract.dat" /></test><test>
- <param name="input1" value="1.bed" />
- <param name="input2" value="2_mod.bed"
ftype="interval"/>
+ <param name="type" value="BED"/>
+ <param name="bed_input1" value="1.bed" />
+ <param name="bed_input2" value="2_mod.bed"
ftype="interval"/><param name="min" value="1"
/><param name="returntype" value="" /><output
name="output" file="gops_subtract_diffCols.dat"
/></test><test>
- <param name="input1" value="gops_subtract_bigint.bed" />
- <param name="input2" value="2.bed" />
+ <param name="type" value="BED"/>
+ <param name="bed_input1" value="gops_subtract_bigint.bed"
/>
+ <param name="bed_input2" value="2.bed" /><param
name="min" value="1" /><param name="returntype"
value="" /><output name="output"
file="gops-subtract.dat" /></test><test>
- <param name="input1" value="1.bed" />
- <param name="input2" value="2.bed" />
+ <param name="type" value="BED"/>
+ <param name="bed_input1" value="1.bed" />
+ <param name="bed_input2" value="2.bed" /><param
name="min" value="10" /><param name="returntype"
value="Non-overlapping pieces of intervals" /><output
name="output" file="gops-subtract-p.dat" /></test>
+ <test>
+ <param name="type" value="GFF"/>
+ <param name="gff_input1" value="gops_subtract_in1.gff"
/>
+ <param name="gff_input2" value="gops_subtract_in2.gff"
/>
+ <param name="min" value="1" />
+ <param name="returntype" value="" />
+ <output name="output" file="gops_subtract_out1.gff" />
+ </test></tests><help>
--- /dev/null
+++ b/test-data/gops_subtract_out1.gff
@@ -0,0 +1,67 @@
+chr13 Cufflinks transcript 3405463 3405542 1000 + . gene_id "CUFF.50189";
transcript_id "CUFF.50189.1"; FPKM "6.3668918357"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "17.963819"; cov
"0.406914";
+chr13 Cufflinks exon 3405463 3405542 1000 + . gene_id "CUFF.50189";
transcript_id "CUFF.50189.1"; exon_number "1"; FPKM
"6.3668918357"; frac "1.000000"; conf_lo "0.000000"; conf_hi
"17.963819"; cov "0.406914";
+chr13 Cufflinks transcript 3473337 3473372 1000 + . gene_id "CUFF.50191";
transcript_id "CUFF.50191.1"; FPKM "11.7350749444"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "35.205225"; cov
"0.750000";
+chr13 Cufflinks exon 3473337 3473372 1000 + . gene_id "CUFF.50191";
transcript_id "CUFF.50191.1"; exon_number "1"; FPKM
"11.7350749444"; frac "1.000000"; conf_lo "0.000000";
conf_hi "35.205225"; cov "0.750000";
+chr13 Cufflinks transcript 3490319 3490350 1000 + . gene_id "CUFF.50193";
transcript_id "CUFF.50193.1"; FPKM "39.6058779373"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "85.338807"; cov
"2.531250";
+chr13 Cufflinks exon 3490319 3490350 1000 + . gene_id "CUFF.50193";
transcript_id "CUFF.50193.1"; exon_number "1"; FPKM
"39.6058779373"; frac "1.000000"; conf_lo "0.000000";
conf_hi "85.338807"; cov "2.531250";
+chr13 Cufflinks exon 3612965 3613028 1000 - . gene_id "CUFF.50207";
transcript_id "CUFF.50207.1"; exon_number "2"; FPKM
"19.6171377865"; frac "1.000000"; conf_lo "0.936995";
conf_hi "38.297281"; cov "1.253750";
+chr13 Cufflinks transcript 3612524 3612550 1000 + . gene_id "CUFF.50213";
transcript_id "CUFF.50213.1"; FPKM "117.3321730764"; frac
"1.000000"; conf_lo "31.638086"; conf_hi "203.026260"; cov
"7.498813";
+chr13 Cufflinks exon 3612524 3612550 1000 + . gene_id "CUFF.50213";
transcript_id "CUFF.50213.1"; exon_number "1"; FPKM
"117.3321730764"; frac "1.000000"; conf_lo "31.638086";
conf_hi "203.026260"; cov "7.498813";
+chr13 Cufflinks transcript 3652248 3652287 1000 + . gene_id "CUFF.50225";
transcript_id "CUFF.50225.1"; FPKM "21.1231348999"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "50.995759"; cov
"1.350000";
+chr13 Cufflinks exon 3652248 3652287 1000 + . gene_id "CUFF.50225";
transcript_id "CUFF.50225.1"; exon_number "1"; FPKM
"21.1231348999"; frac "1.000000"; conf_lo "0.000000";
conf_hi "50.995759"; cov "1.350000";
+chr13 Cufflinks transcript 3652708 3652757 1000 + . gene_id "CUFF.50227";
transcript_id "CUFF.50227.1"; FPKM "16.8985079199"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "40.796607"; cov
"1.080000";
+chr13 Cufflinks exon 3652708 3652757 1000 + . gene_id "CUFF.50227";
transcript_id "CUFF.50227.1"; exon_number "1"; FPKM
"16.8985079199"; frac "1.000000"; conf_lo "0.000000";
conf_hi "40.796607"; cov "1.080000";
+chr13 Cufflinks transcript 3652858 3652892 1000 + . gene_id "CUFF.50229";
transcript_id "CUFF.50229.1"; FPKM "24.1407255999"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "58.280867"; cov
"1.542857";
+chr13 Cufflinks exon 3652858 3652892 1000 + . gene_id "CUFF.50229";
transcript_id "CUFF.50229.1"; exon_number "1"; FPKM
"24.1407255999"; frac "1.000000"; conf_lo "0.000000";
conf_hi "58.280867"; cov "1.542857";
+chr13 Cufflinks transcript 3881504 3881530 1000 + . gene_id "CUFF.50233";
transcript_id "CUFF.50233.1"; FPKM "31.2935331850"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov
"2.000000";
+chr13 Cufflinks exon 3881504 3881530 1000 + . gene_id "CUFF.50233";
transcript_id "CUFF.50233.1"; exon_number "1"; FPKM
"31.2935331850"; frac "1.000000"; conf_lo "0.000000";
conf_hi "75.549272"; cov "2.000000";
+chr13 Cufflinks transcript 3940646 3940672 1000 + . gene_id "CUFF.50239";
transcript_id "CUFF.50239.1"; FPKM "31.2935331850"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov
"2.000000";
+chr13 Cufflinks exon 3940646 3940672 1000 + . gene_id "CUFF.50239";
transcript_id "CUFF.50239.1"; exon_number "1"; FPKM
"31.2935331850"; frac "1.000000"; conf_lo "0.000000";
conf_hi "75.549272"; cov "2.000000";
+chr13 Cufflinks transcript 4253585 4253611 1000 + . gene_id "CUFF.50251";
transcript_id "CUFF.50251.1"; FPKM "31.2935331850"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov
"2.000000";
+chr13 Cufflinks exon 4253585 4253611 1000 + . gene_id "CUFF.50251";
transcript_id "CUFF.50251.1"; exon_number "1"; FPKM
"31.2935331850"; frac "1.000000"; conf_lo "0.000000";
conf_hi "75.549272"; cov "2.000000";
+chr13 Cufflinks transcript 4356816 4356842 1000 + . gene_id "CUFF.50253";
transcript_id "CUFF.50253.1"; FPKM "31.2563804501"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "75.485841"; cov
"1.997626";
+chr13 Cufflinks exon 4356816 4356842 1000 + . gene_id "CUFF.50253";
transcript_id "CUFF.50253.1"; exon_number "1"; FPKM
"31.2563804501"; frac "1.000000"; conf_lo "0.000000";
conf_hi "75.485841"; cov "1.997626";
+chr13 Cufflinks exon 5872240 5872268 1000 - . gene_id "CUFF.50289";
transcript_id "CUFF.50289.1"; exon_number "2"; FPKM
"7.5439767500"; frac "1.000000"; conf_lo "0.000000"; conf_hi
"18.212771"; cov "0.482143";
+chr13 Cufflinks transcript 6205097 6205155 1000 + . gene_id "CUFF.50321";
transcript_id "CUFF.50321.1"; FPKM "14.3207694237"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "34.573396"; cov
"0.915254";
+chr13 Cufflinks exon 6205097 6205155 1000 + . gene_id "CUFF.50321";
transcript_id "CUFF.50321.1"; exon_number "1"; FPKM
"14.3207694237"; frac "1.000000"; conf_lo "0.000000";
conf_hi "34.573396"; cov "0.915254";
+chr13 Cufflinks transcript 6227260 6227293 1000 + . gene_id "CUFF.50323";
transcript_id "CUFF.50323.1"; FPKM "18.6233083846"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "49.047086"; cov
"1.190234";
+chr13 Cufflinks exon 6227260 6227293 1000 + . gene_id "CUFF.50323";
transcript_id "CUFF.50323.1"; exon_number "1"; FPKM
"18.6233083846"; frac "1.000000"; conf_lo "0.000000";
conf_hi "49.047086"; cov "1.190234";
+chr13 Cufflinks transcript 6795860 6795886 1000 + . gene_id "CUFF.50399";
transcript_id "CUFF.50399.1"; FPKM "31.2935331850"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov
"2.000000";
+chr13 Cufflinks exon 6795860 6795886 1000 + . gene_id "CUFF.50399";
transcript_id "CUFF.50399.1"; exon_number "1"; FPKM
"31.2935331850"; frac "1.000000"; conf_lo "0.000000";
conf_hi "75.549272"; cov "2.000000";
+chr13 Cufflinks transcript 7155940 7155966 1000 + . gene_id "CUFF.50401";
transcript_id "CUFF.50401.1"; FPKM "31.2935331850"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov
"2.000000";
+chr13 Cufflinks exon 7155940 7155966 1000 + . gene_id "CUFF.50401";
transcript_id "CUFF.50401.1"; exon_number "1"; FPKM
"31.2935331850"; frac "1.000000"; conf_lo "0.000000";
conf_hi "75.549272"; cov "2.000000";
+chr13 Cufflinks transcript 7676033 7676123 1000 + . gene_id "CUFF.50403";
transcript_id "CUFF.50403.1"; FPKM "9.2848944615"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "22.415718"; cov
"0.593407";
+chr13 Cufflinks exon 7676033 7676123 1000 + . gene_id "CUFF.50403";
transcript_id "CUFF.50403.1"; exon_number "1"; FPKM
"9.2848944615"; frac "1.000000"; conf_lo "0.000000"; conf_hi
"22.415718"; cov "0.593407";
+chr13 Cufflinks transcript 8766868 8767005 1000 + . gene_id "CUFF.50461";
transcript_id "CUFF.50461.1"; FPKM "12.2452955941"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "24.490591"; cov
"0.782609";
+chr13 Cufflinks exon 8766868 8767005 1000 + . gene_id "CUFF.50461";
transcript_id "CUFF.50461.1"; exon_number "1"; FPKM
"12.2452955941"; frac "1.000000"; conf_lo "0.000000";
conf_hi "24.490591"; cov "0.782609";
+chr13 Cufflinks transcript 8767194 8767393 1000 + . gene_id "CUFF.50463";
transcript_id "CUFF.50463.1"; FPKM "12.6738809399"; frac
"1.000000"; conf_lo "2.325700"; conf_hi "23.022061"; cov
"0.810000";
+chr13 Cufflinks exon 8767194 8767393 1000 + . gene_id "CUFF.50463";
transcript_id "CUFF.50463.1"; exon_number "1"; FPKM
"12.6738809399"; frac "1.000000"; conf_lo "2.325700";
conf_hi "23.022061"; cov "0.810000";
+chr13 Cufflinks transcript 8767461 8767531 1000 + . gene_id "CUFF.50465";
transcript_id "CUFF.50465.1"; FPKM "17.8505365351"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "38.462561"; cov
"1.140845";
+chr13 Cufflinks exon 8767461 8767531 1000 + . gene_id "CUFF.50465";
transcript_id "CUFF.50465.1"; exon_number "1"; FPKM
"17.8505365351"; frac "1.000000"; conf_lo "0.000000";
conf_hi "38.462561"; cov "1.140845";
+chr13 Cufflinks transcript 8767695 8767885 1000 + . gene_id "CUFF.50467";
transcript_id "CUFF.50467.1"; FPKM "17.6947726910"; frac
"1.000000"; conf_lo "5.182679"; conf_hi "30.206866"; cov
"1.130890";
+chr13 Cufflinks exon 8767695 8767885 1000 + . gene_id "CUFF.50467";
transcript_id "CUFF.50467.1"; exon_number "1"; FPKM
"17.6947726910"; frac "1.000000"; conf_lo "5.182679";
conf_hi "30.206866"; cov "1.130890";
+chr13 Cufflinks transcript 8767947 8767992 1000 + . gene_id "CUFF.50469";
transcript_id "CUFF.50469.1"; FPKM "27.5519150868"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "59.366126"; cov
"1.760870";
+chr13 Cufflinks exon 8767947 8767992 1000 + . gene_id "CUFF.50469";
transcript_id "CUFF.50469.1"; exon_number "1"; FPKM
"27.5519150868"; frac "1.000000"; conf_lo "0.000000";
conf_hi "59.366126"; cov "1.760870";
+chr13 Cufflinks transcript 8784118 8784193 1000 + . gene_id "CUFF.50471";
transcript_id "CUFF.50471.1"; FPKM "16.6761591315"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "35.932129"; cov
"1.065789";
+chr13 Cufflinks exon 8784118 8784193 1000 + . gene_id "CUFF.50471";
transcript_id "CUFF.50471.1"; exon_number "1"; FPKM
"16.6761591315"; frac "1.000000"; conf_lo "0.000000";
conf_hi "35.932129"; cov "1.065789";
+chr13 Cufflinks transcript 8965678 8965704 1000 + . gene_id "CUFF.50499";
transcript_id "CUFF.50499.1"; FPKM "31.2935331850"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov
"2.000000";
+chr13 Cufflinks exon 8965678 8965704 1000 + . gene_id "CUFF.50499";
transcript_id "CUFF.50499.1"; exon_number "1"; FPKM
"31.2935331850"; frac "1.000000"; conf_lo "0.000000";
conf_hi "75.549272"; cov "2.000000";
+chr13 Cufflinks transcript 9272120 9272153 1000 + . gene_id "CUFF.50507";
transcript_id "CUFF.50507.1"; FPKM "24.8212432986"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "59.944638"; cov
"1.586350";
+chr13 Cufflinks exon 9272120 9272153 1000 + . gene_id "CUFF.50507";
transcript_id "CUFF.50507.1"; exon_number "1"; FPKM
"24.8212432986"; frac "1.000000"; conf_lo "0.000000";
conf_hi "59.944638"; cov "1.586350";
+chr13 Cufflinks exon 9172357 9172437 1000 + . gene_id "CUFF.50509";
transcript_id "CUFF.50509.1"; exon_number "2"; FPKM
"41.4918721248"; frac "1.000000"; conf_lo "16.471332";
conf_hi "66.512412"; cov "2.651786";
+chr13 Cufflinks transcript 9172647 9173652 1000 + . gene_id "CUFF.50513";
transcript_id "CUFF.50513.1"; FPKM "111.9143215254"; frac
"1.000000"; conf_lo "98.203357"; conf_hi "125.625287"; cov
"7.152553";
+chr13 Cufflinks exon 9172647 9173652 1000 + . gene_id "CUFF.50513";
transcript_id "CUFF.50513.1"; exon_number "1"; FPKM
"111.9143215254"; frac "1.000000"; conf_lo "98.203357";
conf_hi "125.625287"; cov "7.152553";
+chr13 Cufflinks transcript 9678669 9678695 1000 + . gene_id "CUFF.50569";
transcript_id "CUFF.50569.1"; FPKM "31.2935331850"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov
"2.000000";
+chr13 Cufflinks exon 9678669 9678695 1000 + . gene_id "CUFF.50569";
transcript_id "CUFF.50569.1"; exon_number "1"; FPKM
"31.2935331850"; frac "1.000000"; conf_lo "0.000000";
conf_hi "75.549272"; cov "2.000000";
+chr13 Cufflinks transcript 9868979 9869072 1000 + . gene_id "CUFF.50603";
transcript_id "CUFF.50603.1"; FPKM "13.4828520638"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "29.051509"; cov
"0.861702";
+chr13 Cufflinks exon 9868979 9869072 1000 + . gene_id "CUFF.50603";
transcript_id "CUFF.50603.1"; exon_number "1"; FPKM
"13.4828520638"; frac "1.000000"; conf_lo "0.000000";
conf_hi "29.051509"; cov "0.861702";
+chr13 Cufflinks transcript 9872853 9872934 1000 + . gene_id "CUFF.50605";
transcript_id "CUFF.50605.1"; FPKM "15.4559523658"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "33.302949"; cov
"0.987805";
+chr13 Cufflinks exon 9872853 9872934 1000 + . gene_id "CUFF.50605";
transcript_id "CUFF.50605.1"; exon_number "1"; FPKM
"15.4559523658"; frac "1.000000"; conf_lo "0.000000";
conf_hi "33.302949"; cov "0.987805";
+chr13 Cufflinks transcript 9874731 9874997 1000 + . gene_id "CUFF.50607";
transcript_id "CUFF.50607.1"; FPKM "12.6580583670"; frac
"1.000000"; conf_lo "3.707459"; conf_hi "21.608657"; cov
"0.808989";
+chr13 Cufflinks exon 9874731 9874997 1000 + . gene_id "CUFF.50607";
transcript_id "CUFF.50607.1"; exon_number "1"; FPKM
"12.6580583670"; frac "1.000000"; conf_lo "3.707459";
conf_hi "21.608657"; cov "0.808989";
+chr13 Cufflinks transcript 9875128 9875201 1000 + . gene_id "CUFF.50609";
transcript_id "CUFF.50609.1"; FPKM "22.8358215134"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "45.671643"; cov
"1.459459";
+chr13 Cufflinks exon 9875128 9875201 1000 + . gene_id "CUFF.50609";
transcript_id "CUFF.50609.1"; exon_number "1"; FPKM
"22.8358215134"; frac "1.000000"; conf_lo "0.000000";
conf_hi "45.671643"; cov "1.459459";
+chr13 Cufflinks transcript 9875323 9875349 1000 + . gene_id "CUFF.50611";
transcript_id "CUFF.50611.1"; FPKM "31.2935331850"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "75.549272"; cov
"2.000000";
+chr13 Cufflinks exon 9875323 9875349 1000 + . gene_id "CUFF.50611";
transcript_id "CUFF.50611.1"; exon_number "1"; FPKM
"31.2935331850"; frac "1.000000"; conf_lo "0.000000";
conf_hi "75.549272"; cov "2.000000";
+chr13 Cufflinks transcript 9875425 9875480 1000 + . gene_id "CUFF.50613";
transcript_id "CUFF.50613.1"; FPKM "15.0879534999"; frac
"1.000000"; conf_lo "0.000000"; conf_hi "36.425542"; cov
"0.964286";
+chr13 Cufflinks exon 9875425 9875480 1000 + . gene_id "CUFF.50613";
transcript_id "CUFF.50613.1"; exon_number "1"; FPKM
"15.0879534999"; frac "1.000000"; conf_lo "0.000000";
conf_hi "36.425542"; cov "0.964286";
--- /dev/null
+++ b/lib/galaxy/tools/util/gff_util.py
@@ -0,0 +1,28 @@
+"""
+Provides utilities for working with GFF files.
+"""
+
+from bx.intervals.io import NiceReaderWrapper, GenomicInterval
+
+class GFFReaderWrapper( NiceReaderWrapper ):
+ """
+ Reader wrapper converts GFF format--starting and ending coordinates are 1-based,
closed--to the 'traditional' interval format--0 based,
+ half-open. This is useful when using GFF files as inputs to tools that expect
traditional interval format.
+ """
+ def parse_row( self, line ):
+ interval = GenomicInterval( self, line.split( "\t" ), self.chrom_col,
self.start_col, self.end_col, self.strand_col, self.default_strand,
fix_strand=self.fix_strand )
+ # Change from 1-based to 0-based format.
+ interval.start -= 1
+ # Add 1 to end to move from open to closed format for end coordinate.
+ interval.end += 1
+ return interval
+
+def convert_to_gff_coordinates( interval ):
+ """
+ Converts a GenomicInterval's coordinates to GFF format.
+ """
+ if type( interval ) is GenomicInterval:
+ interval.start += 1
+ interval.end -= 1
+ return interval
+ return interval