# HG changeset patch --
Bitbucket.org
# Project galaxy-dist
# URL
http://bitbucket.org/galaxy/galaxy-dist/overview
# User jeremy goecks <jeremy.goecks(a)emory.edu>
# Date 1276004899 14400
# Node ID ffd110701ba557277eb0f6476145f3850a1544d1
# Parent 6612433f8b85047033257bf8d66375fa7839b9e1
Remove debugging stmts from cufftools wrappers.
--- a/tools/ngs_rna/cuffdiff_wrapper.py
+++ b/tools/ngs_rna/cuffdiff_wrapper.py
@@ -68,10 +68,7 @@ def __main__():
cmd += ( " --num-importance-samples %i" % int (
options.num_importance_samples ) )
if options.max_mle_iterations:
cmd += ( " --max-mle-iterations %i" % int ( options.max_mle_iterations
) )
-
- # Output/debugging.
- print cmd
-
+
# Add inputs.
cmd += " " + options.inputA + " " + options.input1 + "
" + options.input2
--- a/tools/ngs_rna/cuffcompare_wrapper.py
+++ b/tools/ngs_rna/cuffcompare_wrapper.py
@@ -43,7 +43,6 @@ def __main__():
# Add input files.
# Need to symlink inputs so that output files are written to temp directory.
- print options.input1
input1_file_name = tmp_output_dir + "/input1"
os.symlink( options.input1, input1_file_name )
cmd += " %s" % input1_file_name
--- a/tools/ngs_rna/cufflinks_wrapper.py
+++ b/tools/ngs_rna/cufflinks_wrapper.py
@@ -62,9 +62,6 @@ def __main__():
if options.max_mle_iterations:
cmd += ( " --max-mle-iterations %i" % int ( options.max_mle_iterations
) )
- # Output/debugging.
- print cmd
-
# Add input files.
cmd += " " + options.input