# HG changeset patch -- Bitbucket.org # Project galaxy-dist # URL http://bitbucket.org/galaxy/galaxy-dist/overview # User jeremy goecks jeremy.goecks@emory.edu # Date 1276004899 14400 # Node ID ffd110701ba557277eb0f6476145f3850a1544d1 # Parent 6612433f8b85047033257bf8d66375fa7839b9e1 Remove debugging stmts from cufftools wrappers.
--- a/tools/ngs_rna/cuffdiff_wrapper.py +++ b/tools/ngs_rna/cuffdiff_wrapper.py @@ -68,10 +68,7 @@ def __main__(): cmd += ( " --num-importance-samples %i" % int ( options.num_importance_samples ) ) if options.max_mle_iterations: cmd += ( " --max-mle-iterations %i" % int ( options.max_mle_iterations ) ) - - # Output/debugging. - print cmd - + # Add inputs. cmd += " " + options.inputA + " " + options.input1 + " " + options.input2
--- a/tools/ngs_rna/cuffcompare_wrapper.py +++ b/tools/ngs_rna/cuffcompare_wrapper.py @@ -43,7 +43,6 @@ def __main__(): # Add input files.
# Need to symlink inputs so that output files are written to temp directory. - print options.input1 input1_file_name = tmp_output_dir + "/input1" os.symlink( options.input1, input1_file_name ) cmd += " %s" % input1_file_name
--- a/tools/ngs_rna/cufflinks_wrapper.py +++ b/tools/ngs_rna/cufflinks_wrapper.py @@ -62,9 +62,6 @@ def __main__(): if options.max_mle_iterations: cmd += ( " --max-mle-iterations %i" % int ( options.max_mle_iterations ) )
- # Output/debugging. - print cmd - # Add input files. cmd += " " + options.input