Branch: refs/heads/dev
Home:
https://github.com/galaxyproject/galaxy
Commit: ddeef3fbc2f884d8ad1af95adc164ca8e5bc15c3
https://github.com/galaxyproject/galaxy/commit/ddeef3fbc2f884d8ad1af95adc...
Author: mvdbeek <m.vandenbeek(a)gmail.com>
Date: 2018-10-31 (Wed, 31 Oct 2018)
Changed paths:
M lib/galaxy/datatypes/binary.py
A lib/galaxy/datatypes/test/1.qname_sorted.bam
Log Message:
-----------
Fix sniffing of readname sorted BAM files
This fixes
https://github.com/galaxyproject/galaxy/issues/6949.
The problem is that `super` would fall back to the BamInputSorted
sniffer, which prevents sniffing. Includes a test file for the new
datatype upload testing framework.
Commit: c78f704c230a694d42c769bacdb23d20eb2ea810
https://github.com/galaxyproject/galaxy/commit/c78f704c230a694d42c769bacd...
Author: mvdbeek <m.vandenbeek(a)gmail.com>
Date: 2018-10-31 (Wed, 31 Oct 2018)
Changed paths:
A lib/galaxy/datatypes/test/0.txt
A lib/galaxy/datatypes/test/1.json
Log Message:
-----------
Add two test files that exercise json and txt sniffing
Commit: f40bb68141ebff020401740b8bf9b3b1fc73db60
https://github.com/galaxyproject/galaxy/commit/f40bb68141ebff020401740b8b...
Author: John Chilton <jmchilton(a)gmail.com>
Date: 2018-10-31 (Wed, 31 Oct 2018)
Changed paths:
M lib/galaxy/datatypes/binary.py
A lib/galaxy/datatypes/test/0.txt
A lib/galaxy/datatypes/test/1.json
A lib/galaxy/datatypes/test/1.qname_sorted.bam
Log Message:
-----------
Merge pull request #6950 from mvdbeek/qname_sorted_sniffer
Fix sniffing of readname sorted BAM files
Compare:
https://github.com/galaxyproject/galaxy/compare/b47efd4adedb...f40bb68141eb
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