Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: ddeef3fbc2f884d8ad1af95adc164ca8e5bc15c3 https://github.com/galaxyproject/galaxy/commit/ddeef3fbc2f884d8ad1af95adc164... Author: mvdbeek m.vandenbeek@gmail.com Date: 2018-10-31 (Wed, 31 Oct 2018)
Changed paths: M lib/galaxy/datatypes/binary.py A lib/galaxy/datatypes/test/1.qname_sorted.bam
Log Message: ----------- Fix sniffing of readname sorted BAM files
This fixes https://github.com/galaxyproject/galaxy/issues/6949. The problem is that `super` would fall back to the BamInputSorted sniffer, which prevents sniffing. Includes a test file for the new datatype upload testing framework.
Commit: c78f704c230a694d42c769bacdb23d20eb2ea810 https://github.com/galaxyproject/galaxy/commit/c78f704c230a694d42c769bacdb23... Author: mvdbeek m.vandenbeek@gmail.com Date: 2018-10-31 (Wed, 31 Oct 2018)
Changed paths: A lib/galaxy/datatypes/test/0.txt A lib/galaxy/datatypes/test/1.json
Log Message: ----------- Add two test files that exercise json and txt sniffing
Commit: f40bb68141ebff020401740b8bf9b3b1fc73db60 https://github.com/galaxyproject/galaxy/commit/f40bb68141ebff020401740b8bf9b... Author: John Chilton jmchilton@gmail.com Date: 2018-10-31 (Wed, 31 Oct 2018)
Changed paths: M lib/galaxy/datatypes/binary.py A lib/galaxy/datatypes/test/0.txt A lib/galaxy/datatypes/test/1.json A lib/galaxy/datatypes/test/1.qname_sorted.bam
Log Message: ----------- Merge pull request #6950 from mvdbeek/qname_sorted_sniffer
Fix sniffing of readname sorted BAM files
Compare: https://github.com/galaxyproject/galaxy/compare/b47efd4adedb...f40bb68141eb **NOTE:** This service has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/
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