Hi Ray,
Sorry I missed this mail. On 23. juni 2016 10:27, Raymond Wan wrote:
Dear all,
I'm trying to run the JBrowse tool within Galaxy. The installation was fine (I think), but when I run the tool, I get this error:
Fatal error: Exit code 1 () Traceback (most recent call last): File "/d15/galaxy/shed_tools/toolshed.g2.bx.psu.edu/repos/iuc/jbrowse/d022577ff9cf/jbrowse/jbrowse.py", line 11, in <module> from Bio.Data import CodonTable ImportError: No module named
This sounds like it means you're missing the biopython dependency.
You should check if it installed correctly in the admin interface.
Does this mean I'm missing something?
In the history, if I click the "(i)" icon for the incomplete job (in red), everything looks fine, except that it says:
Tool Version: python: can't open file 'jbrowse.py': [Errno 2] No such file or directory
The version command is misbehaving, safe to ignore.
However, "jbrowse.py" does exist in the path above. Any idea what could be wrong?
Thank you!
Ray ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
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