The specification does not mention zip, gzip or bz2 [1] and I am pretty confident, that it does not in addition compresses its content with zip etc.. It starts with a header "SQLite format 3\000" which is visible in my file with less.
ido
[1]http://www.sqlite.org/fileformat.html
On Dec 7, 2012, at 3:50 PM, John Chilton wrote:
Hi Ido,
Is .sqlite a common compressed file type (i.e. zip, gzip, or bz2) just with a different extension?
If it is, I think upload.py is always going to try to decompress it. That that has long been a behavior I would like to be able to disable on a per file type basis. If this is the problem and the galaxy team agrees to accept a patch for address the issue, I would be happy to try to implement the fix.
-John
On Fri, Dec 7, 2012 at 8:39 AM, Ido Tamir tamir@imp.ac.at wrote:
from http://wiki.galaxyproject.org/Admin/Datatypes/Adding%20Datatypes I thought that adding subclass="True" in datatypes_conf.xml would be enough to register my new type, but it seems like I stil have to add an entry in binary.py for it to be recognized. But its still corrupted.
thank you very much, ido
Tool: Upload File Name: hg19.sqlite Created: Dec 07, 2012 Filesize: 11.1 MB Dbkey: hg19 Format: sqlite