This is likely an issue with using active vs. passive FTP. Unfortunately since you're not using `--net=host` you can't use passive ftp (at least it's never worked for me). Perhaps sftp on port 8022 will work better. -- Devon Ryan, Ph.D. Email: dpryan@dpryan.com Data Manager/Bioinformatician Max Planck Institute of Immunobiology and Epigenetics Stübeweg 51 79108 Freiburg Germany <devon.ryan@dzne.de> On Fri, Jun 23, 2017 at 1:06 PM, Md. Rezaul Karim < rezaul.karim@insight-centre.org> wrote:
Timeout detected. (data connection) Could not retrieve directory listing Error listing directory '/'.
However, when I tried from Ubuntu terminal it gets connected. However, I am getting below error:
asif@ubuntu:~$ ftp 10.196.106.60 8021 Connected to 10.196.106.60. 220 ProFTPD 1.3.5rc3 Server (Public Galaxy FTP) [::ffff:172.17.0.2] Name (10.196.106.60:asif): rezaul.karim@insight-centre.org 331 Password required for rezaul.karim@insight-centre.org Password: 230 User rezaul.karim@insight-centre.org logged in Remote system type is UNIX. Using binary mode to transfer files. ftp> ls 500 Illegal PORT command ftp: bind: Address already in use ftp> quit 221 Goodbye.
Regards, _________________________________ *Md. Rezaul Karim*, BSc, MSc Researcher, INSIGHT Centre for Data Analytics National University of Ireland, Galway IDA Business Park, Dangan, Galway, Ireland Web: http://www.reza-analytics.eu/index.html <http://139.59.184.114/index.html>
On 23 June 2017 at 12:01, Devon Ryan <dpryan@dpryan.com> wrote:
Do you get an error of some sort?
-- Devon Ryan, Ph.D. Email: dpryan@dpryan.com Data Manager/Bioinformatician Max Planck Institute of Immunobiology and Epigenetics Stübeweg 51 79108 Freiburg Germany <devon.ryan@dzne.de>
On Fri, Jun 23, 2017 at 12:33 PM, Md. Rezaul Karim < rezaul.karim@insight-centre.org> wrote:
Hi Devon,
I tried to connect to Galaxy instance with FTP client WinSCP as follows:
[image: Inline images 1]
But no luck. Even I tried with the DNS (i.e. http://bioopenergalaxy.insight-centre.org/) and changing SFTP to FTP and tried with port number 21 and 8021 too.
Regards, _________________________________ *Md. Rezaul Karim*, BSc, MSc Researcher, INSIGHT Centre for Data Analytics National University of Ireland, Galway IDA Business Park, Dangan, Galway, Ireland Web: http://www.reza-analytics.eu/index.html <http://139.59.184.114/index.html>
On 23 June 2017 at 11:05, Md. Rezaul Karim < rezaul.karim@insight-centre.org> wrote:
Ok, thanks for the clarification. I will try again and get back to you.
On Jun 23, 2017 11:03 AM, "Devon Ryan" <dpryan@dpryan.com> wrote:
If your user is an admin then yes. Each user can use their normal login credentials. -- Devon Ryan, Ph.D. Email: dpryan@dpryan.com Data Manager/Bioinformatician Max Planck Institute of Immunobiology and Epigenetics Stübeweg 51 79108 Freiburg Germany
Did you mean using the admin user email id and the password?
Regards, _________________________________ Md. Rezaul Karim, BSc, MSc Researcher, INSIGHT Centre for Data Analytics National University of Ireland, Galway IDA Business Park, Dangan, Galway, Ireland Web: http://www.reza-analytics.eu/index.html
On 23 June 2017 at 10:44, Devon Ryan <dpryan@dpryan.com> wrote: > > You should be able to login with the email address and password that > you use for Galaxy then. That works for my instances at least. > -- > Devon Ryan, Ph.D. > Email: dpryan@dpryan.com > Data Manager/Bioinformatician > Max Planck Institute of Immunobiology and Epigenetics > Stübeweg 51 > 79108 Freiburg > Germany > > > On Fri, Jun 23, 2017 at 11:38 AM, Md. Rezaul Karim > <rezaul.karim@insight-centre.org> wrote: > > Hi Devon, > > > > Yes, I'm running the galaxy-docker-stable from Björn and my RiboGalaxy > > is > > built on top of it (version 17.05). My system admin has provided me with > > the > > IP address of this DNS and when I issue the FTP command as follows: > > > > asif@ubuntu:~$ ftp 10.196.106.60 8021 > > > > It shows: > > > > Connected to 10.196.106.60. > > 220 ProFTPD 1.3.5rc3 Server (Public Galaxy FTP) [::ffff:172.17.0.2] > > Name (10.196.106.60:asif): > > > > It seems ProFTPD is already configured. While running the container, > > port > > 8021 was mapped to 21. > > > > > > Regards, > > _________________________________ > > Md. Rezaul Karim, BSc, MSc > > Researcher, INSIGHT Centre for Data Analytics > > National University of Ireland, Galway > > IDA Business Park, Dangan, Galway, Ireland > > Web: http://www.reza-analytics.eu/index.html > > > > On 23 June 2017 at 10:30, Devon Ryan <dpryan@dpryan.com> wrote: > >> > >> Are you using galaxy-docker-stable from Björn > >> (https://github.com/bgruening/docker-galaxy-stable) or did you make > >> your own dockerized-Galaxy version? Björn's runs proFTPd by default, > >> so if you're using it then ensure that's running in the container. > >> > >> Devon > >> -- > >> Devon Ryan, Ph.D. > >> Email: dpryan@dpryan.com > >> Data Manager/Bioinformatician > >> Max Planck Institute of Immunobiology and Epigenetics > >> Stübeweg 51 > >> 79108 Freiburg > >> Germany > >> > >> > >> On Fri, Jun 23, 2017 at 11:17 AM, Md. Rezaul Karim > >> <rezaul.karim@insight-centre.org> wrote: > >> > Dear All, > >> > > >> > I have Dockerized the Galaxy and it's running as a containerized > >> > application > >> > on the DC/OS server. It can be accessed at > >> > http://bioopenergalaxy.insight-centre.org/. > >> > > >> > However, I'm wondering how to FTP files on it. Please note
On Fri, Jun 23, 2017 at 11:45 AM, Md. Rezaul Karim <rezaul.karim@insight-centre.org> wrote: that I
> >> > have > >> > the > >> > following configuration on the galaxy.ini file: > >> > > >> > # This should point to a directory containing subdirectories matching > >> > users' > >> > identifier (defaults to e-mail), where Galaxy will look for files. > >> > ftp_upload_dir = /export/ftp > >> > > >> > # This should be the hostname of your FTP server, which will be > >> > provided > >> > to > >> > users in the help text. > >> > ftp_upload_site = bioopenergalaxy.insight-centre.org > >> > > >> > > >> > Any help or pointer would be highly appreciated. > >> > > >> > > >> > > >> > > >> > Regards, > >> > _________________________________ > >> > Md. Rezaul Karim, BSc, MSc > >> > Researcher, INSIGHT Centre for Data Analytics > >> > National University of Ireland, Galway > >> > IDA Business Park, Dangan, Galway, Ireland > >> > Web: http://www.reza-analytics.eu/index.html > >> > > >> > ___________________________________________________________ > >> > Please keep all replies on the list by using "reply all" > >> > in your mail client. To manage your subscriptions to this > >> > and other Galaxy lists, please use the interface at: > >> > https://lists.galaxyproject.org/ > >> > > >> > To search Galaxy mailing lists use the unified search at: > >> > http://galaxyproject.org/search/ > > > >
