On Apr 27, 2012, at 6:00 AM, Sarah Maman wrote:
Hello,
After pulling latest changes (March 2012 - r 40f1816d6857), jobs launched run properly (output files OK) but I get the following warning:
/WARNING:galaxy.eggs:Warning: MarkupSafe (a dependent egg of Mako) cannot be fetched/
Hi Sarah,
I'm guessing that you are using a cluster with Galaxy. If this is correct, please try the following:
1. Log in to a cluster node as the user that runs Galaxy 2. cd to the galaxy-dist directory 3. run `python ./scripts/fetch_eggs.py`
This should grab any missing eggs.
In addition, Galaxy GUI is not exactly GUI seen in the cloud (https://main.g2.bx.psu.edu/). For example, "Visualization" menu is absent and I think it should be related to the previous warning?
See the 'enable_tracks' setting in universe_wsgi.ini to enable the Visualization menu.
--nate
How to ensure that eggs be properly fetched?
Thank you in advance, Sarah Maman ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: