Hi Karen,
that bug was fixed. Can you update your Galaxy installation?
Cheers, Bjoern
Hello,
I am currently unable to install a number of tools from toolshed to our cloud instance. Unfortunately, this pops up for quite a few tools (I am currently trying to install cuffmerge, but I see this again and again). Any help would be appreciated!
I am seeing the following error:
URL: http://ec2-54-204-115-185.compute-1.amazonaws.com/admin_toolshed/prepare_for... File '/mnt/galaxy/galaxy-app/lib/galaxy/web/framework/middleware/error.py', line 149 in __call__ app_iter = self.application(environ, sr_checker) File '/mnt/galaxy/galaxy-app/eggs/Paste-1.7.5.1-py2.7.egg/paste/recursive.py', line 84 in __call__ return self.application(environ, start_response) File '/mnt/galaxy/galaxy-app/eggs/Paste-1.7.5.1-py2.7.egg/paste/httpexceptions.py', line 633 in __call__ return self.application(environ, start_response) File '/mnt/galaxy/galaxy-app/lib/galaxy/web/framework/base.py', line 132 in __call__ return self.handle_request( environ, start_response ) File '/mnt/galaxy/galaxy-app/lib/galaxy/web/framework/base.py', line 190 in handle_request body = method( trans, **kwargs ) File '/mnt/galaxy/galaxy-app/lib/galaxy/web/framework/__init__.py', line 221 in decorator return func( self, trans, *args, **kwargs ) File '/mnt/galaxy/galaxy-app/lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py', line 896 in prepare_for_install common_install_util.get_dependencies_for_repository( trans, tool_shed_url, repo_info_dict, includes_tool_dependencies ) File '/mnt/galaxy/galaxy-app/lib/tool_shed/util/common_install_util.py', line 84 in get_dependencies_for_repository installed_rd, missing_rd = get_installed_and_missing_repository_dependencies_for_new_install( trans, repo_info_tuple ) File '/mnt/galaxy/galaxy-app/lib/tool_shed/util/common_install_util.py', line 190 in get_installed_and_missing_repository_dependencies_for_new_install tool_shed, name, owner, changeset_revision, prior_installation_required = suc.parse_repository_dependency_tuple( rd_tup ) File '/mnt/galaxy/galaxy-app/lib/tool_shed/util/shed_util_common.py', line 1106 in parse_repository_dependency_tuple prior_installation_required = str( prior_installation_required ) UnboundLocalError: local variable 'prior_installation_required' referenced before assignment
-- Karen H. Miga, PhD
Postdoctoral Scholar University of California, Santa Cruz (831)459-5232 ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
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