Re: [galaxy-dev] Fastq Groomer

On Tue, Apr 3, 2012 at 1:57 AM, Xu, Jianpeng jianpeng.xu@emory.edu wrote:

Hi,

I have installed our local galaxy. I have a question for Fastq Groomer:

Is it an interior tool within Galaxy ? I mean you already incorporate it into Galaxy?  Or, you incorporate an external tool into Galaxy ? Do you know some programs that can be used to do the quality score conversion ?

Thanks a lot.

It is a Python script the Galaxy team wrote specifically for Galaxy, which uses the Galaxy FASTQ handling code. The source is here: https://bitbucket.org/galaxy/galaxy-central/src/default/tools/fastq/fastq_gr... https://bitbucket.org/galaxy/galaxy-central/src/default/tools/fastq/fastq_gr...

Peter