Thanks John for your help, if I get it will I set just a external view of my files? My idea is to provide multiple files in the galaxy history. I tried to rewrite the 'galaxy.joson' file but without results. So far, I have made up just the tool below:
upload3.py $report1 $report1.id $__new_file_path__ #if (len(str($url_paste).split(','))>1): #for $i in $url_paste: $i #end for #else: $url_paste #end if </command> <inputs action="link to" check_values="false" method="post"> </inputs> <request_param_translation> <request_param galaxy_name="URL_method" remote_name="URL_method" missing="post" /> <request_param galaxy_name="URL" remote_name="URL" missing="" /> <request_param galaxy_name="url_paste" remote_name="mclfile[]" missing="txt" /> </request_param_translation> <outputs> <data format="txt" name="report1" /> </outputs>
Using this config file I'm able to import multiple files in the galaxy history. But I can't set a name to distinguish them. I am not sure how to proceed.
If you or anyone have other suggestions I will be grateful.
thanks again Daniele
2015-03-30 2:57 GMT+02:00 John Chilton jmchilton@gmail.com:
There was some work last summer to allow something that at least vaguely sounds like what you are trying to accomplish - though I was not involved so I probably am unable to help out much. The Trello card that was tracking progress on this can be found here - https://trello.com/c/YlADVbkI - and seems to provide some good details. I am not sure if there is more formal documentation anywhere though.
Hope this helps,
-John
On Fri, Mar 27, 2015 at 7:34 AM, Daniele P Colobraro d.colobraro@gmail.com wrote:
Hi all,
I've set up a simple tool using the synchronous method to upload a file
on
galaxy. I'm able to visit the external link, select and upload a file by the
list.
The script that I use is data_source.py and the 'command' part in the xml configuration is the same as the ucsc xml config (ucsc_tablebrowser.xml). But my purpose is to import multiple files.
Have you any idea how I can set a way to import/upload multiple files by using the synchronous method?
Thank in advance, Best regards Daniele
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