7ee294b9ae51a27f1e7ed96e712c5792?
On Wed, Jun 8, 2016 at 11:33 AM Martin Čech <marten(a)bx.psu.edu> wrote:
This looks like an Ensembl problem, because they are prefixing the
redirect url with "http://www.ensembl.org/
<
http://www.ensembl.org/galaxy-dev.fmi.ch/tool_runner/biomart?type=text&am...;.
If you just go to http://
galaxy-dev.fmi.ch/tool_runner/biomart?type=text&name=Homo%20sapiens%2...
<
http://www.ensembl.org/galaxy-dev.fmi.ch/tool_runner/biomart?type=text&am...
it
will most probably work.
They might be whitelisting
usegalaxy.org to not add prefix, or some other
bug, I will try contacting them, thank you for the report.
Martin
On Wed, Jun 8, 2016 at 11:19 AM Hans-Rudolf Hotz <hrh(a)fmi.ch> wrote:
> Hi Martin
>
> we are still on "15.10" (minor version "2")
>
> However, I see the same issues on other public galaxy server which are
> already on 16.04
>
>
>
>
http://www.ensembl.org/galaxy-dev.fmi.ch/tool_runner/biomart?type=text&am...
>
>
>
> Hans-Rudolf
>
>
> On 06/08/2016 04:36 PM, Martin Čech wrote:
> > Hello Hans-Rudolf,
> >
> > What version of Galaxy are you using? Can you please share a specific
> > URL you were sent to that returns a 404?
> >
> > thanks
> >
> > M.
> >
> >
> > On Wed, Jun 8, 2016 at 4:53 AM Hans-Rudolf Hotz <hrh(a)fmi.ch
> > <mailto:hrh@fmi.ch>> wrote:
> >
> > Hi all
> >
> > Please allow me to come back to this old problem:
> >
> > On
usegalaxy.org <
http://usegalaxy.org>, the tool is now pointing
> to
> >
http://www.ensembl.org/biomart/martview (see also:
> >
>
https://github.com/galaxyproject/galaxy/commit/c49e7803fa1814abd04afb26b5...
> > ) and it seems to work, i.e stuff is sent to
usegalaxy.org
> > <
http://usegalaxy.org>.
> >
> > If I try to do the same on our local galaxy server, I still run
> into the
> > same problem as last November: the requests are not send to Galaxy,
> but
> > end up on the ensembl web page, where they cause a "Error 404 -
> Page not
> > found".
> >
> > Is there anything else, I need to change?
> >
> >
> > Thank you very much for your help
> > Hans-Rudolf
> >
> >
> >
> > On 11/17/2015 08:40 AM, Hans-Rudolf Hotz wrote:
> > > Hi
> > >
> > > As you probably know, the central BioMart server is currently
> > > unavailable (see:
http://www.biomart.org/notice.html). Hence,
> the
> > "Get
> > > Data -> BioMart Central server" tool in our local Galaxy
> installation
> > > does not work anymore - well, this is also the case on
> >
usegalaxy.org <
http://usegalaxy.org>.
> > >
> > >
> > > We can easily switch the tool to point to a different Mart
> > server, i.e.:
> > >
> > > Change: <inputs
action="http://www.biomart.org/biomart/martview"
> ....
> > >
> > > to: <inputs
> > action="http://www.ebi.ac.uk/uniprot/biomart/martview" ....
> > >
> > >
> > > However, we would like to switch to the ensembl Mart server:
> > >
> > >
http://www.ensembl.org/biomart/martview
> > >
> > >
> > > It looks like the ensembl Mart server is nowadays embedded in the
> > > ensembl web site, and the requests are not send to Galaxy, but
> > end up on
> > > the ensembl web page, where they cause a "Error 404 - Page not
> > found".
> > > Unfortunately, I am not that savvy about the inner works of the
> > ensembl
> > > web site anymore ;)
> > >
> > >
> > > Has anyone else looked into this problem and found already a
> > solution?
> > >
> > > Thank you very much for any help
> > >
> > >
> > > Hans-Rudolf
> > >
> > >
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