On Thu, Aug 1, 2013 at 10:27 AM, Nicola Soranzo email@example.com wrote:
Il 2013-07-30 17:18 Peter Cock ha scritto:
Re: http://lists.bx.psu.edu/pipermail/galaxy-dev/2012-June/010153.html http://lists.bx.psu.edu/pipermail/galaxy-dev/2012-October/011557.html
Something I raised during the GCC2013, and we talked about via Twitter as well was a Galaxy environment variable for use within Tool Wrappers setting the number of threads/CPUs to use.
The idea is that you can configure a default value, and then override this per runner or per tool etc.
Thanks Peter for pushing this idea, I totally support this proposal. In the mean time, I've been using for my tools the solution by Jim Johnson for its CD-HIT wrapper:
But this requires the system administrator to modify both the tool env.sh and job_conf.xml to be in sync.
Is there an open Trello card for this?
A Trello card would be useful indeed.
Better than a Trello card, we now have a pull request from John: https://bitbucket.org/galaxy/galaxy-central/pull-request/236/job-runner-enha...