I've successfully installed bx-python, and there are mountain of utility scripts. Which ones do you use for converting the quals.fa file to binned array format?
David
On Feb 1, 2011, at 2:50 PM, Guru Ananda wrote:
Hi David,
We download quality score files (qual.fa) from UCSC and convert them to binned array format using scripts from bx-python (https://bitbucket.org/james_taylor/bx-python/wiki/Home) to enable fast seek. If you interested in the particulars (which script etc.), please let me know and I can provide you with the details.
Thanks, Guru.
On Tue, Feb 1, 2011 at 1:23 PM, David Hoover hooverdm@helix.nih.gov wrote: Where do the files in quality_scores.loc come from? Can they be downloaded from UCSC or somewhere else?
David Hoover Helix Systems Staff http://helix.nih.gov _______________________________________________ galaxy-dev mailing list galaxy-dev@lists.bx.psu.edu http://lists.bx.psu.edu/listinfo/galaxy-dev
-- Graduate student, Bioinformatics and Genomics Makova lab/Galaxy team 505 Wartik lab University Park PA 16802 guru@psu.edu