27 Oct
2010
27 Oct
'10
4:51 p.m.
We had a sharp-eyed researcher notice that her tophat output with various parameters was always yielding the same results. JJ tracked it down to a bug in tophat_wrapper.py where the segment-length and segment-mismatches are displayed in the options and are parsed in ophat_wrapper.py, but those options are never added to the actual command line for tophat. Attached is a patch that wires them up. -- Ry4an Brase 612-626-6575 Software Developer Application Development University of Minnesota Supercomputing Institute http://www.msi.umn.edu