27 Oct
2010
27 Oct
'10
11:51 p.m.
We had a sharp-eyed researcher notice that her tophat output with various parameters was always yielding the same results. JJ tracked it down to a bug in tophat_wrapper.py where the segment-length and segment-mismatches are displayed in the options and are parsed in ophat_wrapper.py, but those options are never added to the actual command line for tophat.
Attached is a patch that wires them up.
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Ry4an Brase 612-626-6575
Software Developer Application Development
University of Minnesota Supercomputing Institute http://www.msi.umn.edu