I've got a strange problem with python paths/eggs. When I run any tool that
produces html/text output I get the error:
WARNING:galaxy.eggs:Warning: MarkupSafe (a dependent egg of Mako) cannot be
So if I close galaxy, delete the eggs folder, run fetch_eggs.py (on the
cluster, sourcing the same files as galaxy does so the python path should
be identical) it gathers all the eggs it needs for python 2.7.
Running a job then ends with the proper results, no errors, but not with
python 2.6 eggs present in the eggs folder alongside the 2.7 eggs.
Re-running the same job, or running any other that produces html output,
not throws up the error mentioned above.
I can't see anywhere where I've missed a python path or anywhere where
python 2.6 is mentioned.
Any idea what I'm missing here?