Is there also a way to supress these:
192.168.3.61 - - [07/Sep/2010:13:05:48 +0200] "POST
/root/history_item_updates HTTP/1.1" 200 - "http://galaxy/history"
"Mozilla/5.0 (X11; U; Linux x86_64; en-US; rv:1.9.2.8) Gecko/20100723
Ubuntu/10.04 (lucid) Firefox/3.6.8"
Logging Messages?
Thx Michael
Am 06/02/2010 03:15 AM, schrieb Michael Pheasant:
Thanks, that fixed it, they were uncommented!
CHeers
m
--
Michael Pheasant
Software Engineer
Queensland Facility for Advanced Bioinformatics
Level 6, QBP
University of Queensland, QLD 4072
T: +61 (0)7 3346 2070
F: +61 (0)7 3346 2101
www.qfab.org
On Wed, Jun 2, 2010 at 9:56 AM, James Taylor<james(a)bx.psu.edu> wrote:
> Have you uncommented either of:
>
> #database_engine_option_echo = true
> #database_engine_option_echo_pool = true
>
> In you universe_wsgi.ini?
>
> On Jun 1, 2010, at 7:53 PM, Michael Pheasant wrote:
>
>> using run script with single web server/jobrunner:
>> universe_wsgi.ini:
>> log_level = WARNING
>> enable_job_running = True
>>
>> *) During the startup sequence there is a bunch of INFO stuff;
>>
>> 2010-06-02 09:49:55,321 INFO sqlalchemy.pool.QueuePool.0x...8410
>> Created new connection<_mysql.connection open to 'localhost' at
>> 1aab1730>
>> sqlalchemy.pool.QueuePool.0x...8410 INFO 2010-06-02 09:49:55,321
>> Created new connection<_mysql.connection open to 'localhost' at
>> 1aab1730>
>> 2010-06-02 09:49:55,321 INFO sqlalchemy.pool.QueuePool.0x...8410
>> Connection<_mysql.connection open to 'localhost' at 1aab1730>
checked
>> out from pool
>> sqlalchemy.pool.QueuePool.0x...8410 INFO 2010-06-02 09:49:55,321
>> Connection<_mysql.connection open to 'localhost' at 1aab1730>
checked
>> out from pool
>> 2010-06-02 09:49:55,322 INFO sqlalchemy.engine.base.Engine.0x...85d0
>> SHOW VARIABLES LIKE 'character_set%%'
>> sqlalchemy.engine.base.Engine.0x...85d0 INFO 2010-06-02 09:49:55,322
>> SHOW VARIABLES LIKE 'character_set%%'
>> 2010-06-02 09:49:55,322 INFO sqlalchemy.engine.base.Engine.0x...85d0 ()
>> sqlalchemy.engine.base.Engine.0x...85d0 INFO 2010-06-02 09:49:55,322 ()
>> 2010-06-02 09:49:55,323 INFO sqlalchemy.engine.base.Engine.0x...85d0
>> SHOW VARIABLES LIKE 'sql_mode'
>> sqlalchemy.engine.base.Engine.0x...85d0 INFO 2010-06-02 09:49:55,323
>> SHOW VARIABLES LIKE 'sql_mode'
>> 2010-06-02 09:49:55,323 INFO sqlalchemy.engine.base.Engine.0x...85d0 ()
>> sqlalchemy.engine.base.Engine.0x...85d0 INFO 2010-06-02 09:49:55,323 ()
>> 2010-06-02 09:49:55,348 INFO sqlalchemy.engine.base.Engine.0x...85d0
>> SHOW CREATE TABLE dataset
>> sqlalchemy.engine.base.Engine.0x...85d0 INFO 2010-06-02 09:49:55,348
>> SHOW CREATE TABLE dataset
>> 2010-06-02 09:49:55,348 INFO sqlalchemy.engine.base.Engine.0x...85d0 ()
>>
>>
>> Then every second there is the database ping for jobs;
>>
>> sqlalchemy.engine.base.Engine.0x...0e50 INFO 2010-06-02 09:50:15,153
>> SELECT job.id AS job_id, job.create_time AS job_create_time,
>> job.update_time AS job_update_time, job.history_id AS job_history_id,
>> job.library_folder_id AS job_library_folder_id, job.tool_id AS
>> job_tool_id, job.tool_version AS job_tool_version, job.state AS
>> job_state, job.info AS job_info, job.command_line AS job_command_line,
>> job.param_filename AS job_param_filename, job.runner_name AS
>> job_runner_name_1, job.stdout AS job_stdout, job.stderr AS job_stderr,
>> job.traceback AS job_traceback, job.session_id AS job_session_id,
>> job.job_runner_name AS job_job_runner_name, job.job_runner_external_id
>> AS job_job_runner_external_id,
>> library_dataset_dataset_association_1.id AS
>> library_dataset_dataset_association_1_id,
>> library_dataset_dataset_association_1.library_dataset_id AS
>> library_dataset_dataset_association_1_library_dataset_id,
>> library_dataset_dataset_association_1.dataset_id AS
>> library_dataset_dataset_association_1_dataset_id,
>> library_dataset_dataset_association_1.create_time AS
>> library_dataset_dataset_association_1_create_time,
>> library_dataset_dataset_association_1.update_time AS
>> library_dataset_dataset_association_1_update_time,
>>
>> library_dataset_dataset_association_1.copied_from_history_dataset_association_id
>> AS
>>
library_dataset_dataset_association_1_copied_from_history_dataset_association_id,
>>
>>
library_dataset_dataset_association_1.copied_from_library_dataset_dataset_association_id
>> AS
>>
library_dataset_dataset_association_1_copied_from_library_dataset_dataset_association_id,
>> library_dataset_dataset_association_1.name AS
>> library_dataset_dataset_association_1_name,
>> library_dataset_dataset_association_1.info AS
>> library_dataset_dataset_association_1_info,
>> library_dataset_dataset_association_1.blurb AS
>> library_dataset_dataset_association_1_blurb,
>> library_dataset_dataset_association_1.peek AS
>> library_dataset_dataset_association_1_peek,
>> library_dataset_dataset_association_1.extension AS
>> library_dataset_dataset_association_1_extension,
>> library_dataset_dataset_association_1.metadata AS
>> library_dataset_dataset_association_1_metadata,
>> library_dataset_dataset_association_1.parent_id AS
>> library_dataset_dataset_association_1_parent_id,
>> library_dataset_dataset_association_1.designation AS
>> library_dataset_dataset_association_1_designation,
>> library_dataset_dataset_association_1.deleted AS
>> library_dataset_dataset_association_1_deleted,
>> library_dataset_dataset_association_1.visible AS
>> library_dataset_dataset_association_1_visible,
>> library_dataset_dataset_association_1.user_id AS
>> library_dataset_dataset_association_1_user_id,
>> library_dataset_dataset_association_1.message AS
>> library_dataset_dataset_association_1_message,
>> job_to_output_library_dataset_1.id AS
>> job_to_output_library_dataset_1_id,
>> job_to_output_library_dataset_1.job_id AS
>> job_to_output_library_dataset_1_job_id,
>> job_to_output_library_dataset_1.ldda_id AS
>> job_to_output_library_dataset_1_ldda_id,
>> job_to_output_library_dataset_1.name AS
>> job_to_output_library_dataset_1_name, dataset_1.id AS dataset_1_id,
>> dataset_1.create_time AS dataset_1_create_time, dataset_1.update_time
>> AS dataset_1_update_time, dataset_1.state AS dataset_1_state,
>> dataset_1.deleted AS dataset_1_deleted, dataset_1.purged AS
>> dataset_1_purged, dataset_1.purgable AS dataset_1_purgable,
>> dataset_1.external_filename AS dataset_1_external_filename,
>> dataset_1._extra_files_path AS dataset_1__extra_files_path,
>> dataset_1.file_size AS dataset_1_file_size,
>> history_dataset_association_1.id AS history_dataset_association_1_id,
>> history_dataset_association_1.history_id AS
>> history_dataset_association_1_history_id,
>> history_dataset_association_1.dataset_id AS
>> history_dataset_association_1_dataset_id,
>> history_dataset_association_1.create_time AS
>> history_dataset_association_1_create_time,
>> history_dataset_association_1.update_time AS
>> history_dataset_association_1_update_time,
>> history_dataset_association_1.copied_from_history_dataset_association_id
>> AS
>> history_dataset_association_1_copied_from_history_dataset_association_id,
>>
>> history_dataset_association_1.copied_from_library_dataset_dataset_association_id
>> AS
>>
history_dataset_association_1_copied_from_library_dataset_dataset_association_id,
>> history_dataset_association_1.hid AS
>> history_dataset_association_1_hid, history_dataset_association_1.name
>> AS history_dataset_association_1_name,
>> history_dataset_association_1.info AS
>> history_dataset_association_1_info,
>> history_dataset_association_1.blurb AS
>> history_dataset_association_1_blurb,
>> history_dataset_association_1.peek AS
>> history_dataset_association_1_peek,
>> history_dataset_association_1.extension AS
>> history_dataset_association_1_extension,
>> history_dataset_association_1.metadata AS
>> history_dataset_association_1_metadata,
>> history_dataset_association_1.parent_id AS
>> history_dataset_association_1_parent_id,
>> history_dataset_association_1.designation AS
>> history_dataset_association_1_designation,
>> history_dataset_association_1.deleted AS
>> history_dataset_association_1_deleted,
>> history_dataset_association_1.visible AS
>> history_dataset_association_1_visible, job_to_input_dataset_1.id AS
>> job_to_input_dataset_1_id, job_to_input_dataset_1.job_id AS
>> job_to_input_dataset_1_job_id, job_to_input_dataset_1.dataset_id AS
>> job_to_input_dataset_1_dataset_id, job_to_input_dataset_1.name AS
>> job_to_input_dataset_1_name, dataset_2.id AS dataset_2_id,
>> dataset_2.create_time AS dataset_2_create_time, dataset_2.update_time
>> AS dataset_2_update_time, dataset_2.state AS dataset_2_state,
>> dataset_2.deleted AS dataset_2_deleted, dataset_2.purged AS
>> dataset_2_purged, dataset_2.purgable AS dataset_2_purgable,
>> dataset_2.external_filename AS dataset_2_external_filename,
>> dataset_2._extra_files_path AS dataset_2__extra_files_path,
>> dataset_2.file_size AS dataset_2_file_size,
>> history_dataset_association_2.id AS history_dataset_association_2_id,
>> history_dataset_association_2.history_id AS
>> history_dataset_association_2_history_id,
>> history_dataset_association_2.dataset_id AS
>> history_dataset_association_2_dataset_id,
>> history_dataset_association_2.create_time AS
>> history_dataset_association_2_create_time,
>> history_dataset_association_2.update_time AS
>> history_dataset_association_2_update_time,
>> history_dataset_association_2.copied_from_history_dataset_association_id
>> AS
>> history_dataset_association_2_copied_from_history_dataset_association_id,
>>
>> history_dataset_association_2.copied_from_library_dataset_dataset_association_id
>> AS
>>
history_dataset_association_2_copied_from_library_dataset_dataset_association_id,
>> history_dataset_association_2.hid AS
>> history_dataset_association_2_hid, history_dataset_association_2.name
>> AS history_dataset_association_2_name,
>> history_dataset_association_2.info AS
>> history_dataset_association_2_info,
>> history_dataset_association_2.blurb AS
>> history_dataset_association_2_blurb,
>> history_dataset_association_2.peek AS
>> history_dataset_association_2_peek,
>> history_dataset_association_2.extension AS
>> history_dataset_association_2_extension,
>> history_dataset_association_2.metadata AS
>> history_dataset_association_2_metadata,
>> history_dataset_association_2.parent_id AS
>> history_dataset_association_2_parent_id,
>> history_dataset_association_2.designation AS
>> history_dataset_association_2_designation,
>> history_dataset_association_2.deleted AS
>> history_dataset_association_2_deleted,
>> history_dataset_association_2.visible AS
>> history_dataset_association_2_visible, job_to_output_dataset_1.id AS
>> job_to_output_dataset_1_id, job_to_output_dataset_1.job_id AS
>> job_to_output_dataset_1_job_id, job_to_output_dataset_1.dataset_id AS
>> job_to_output_dataset_1_dataset_id, job_to_output_dataset_1.name AS
>> job_to_output_dataset_1_name
>> FROM job LEFT OUTER JOIN job_to_output_library_dataset AS
>> job_to_output_library_dataset_1 ON job.id =
>> job_to_output_library_dataset_1.job_id LEFT OUTER JOIN
>> library_dataset_dataset_association AS
>> library_dataset_dataset_association_1 ON
>> library_dataset_dataset_association_1.id =
>> job_to_output_library_dataset_1.ldda_id LEFT OUTER JOIN
>> job_to_input_dataset AS job_to_input_dataset_1 ON job.id =
>> job_to_input_dataset_1.job_id LEFT OUTER JOIN
>> history_dataset_association AS history_dataset_association_1 ON
>> history_dataset_association_1.id = job_to_input_dataset_1.dataset_id
>> LEFT OUTER JOIN dataset AS dataset_1 ON dataset_1.id =
>> history_dataset_association_1.dataset_id LEFT OUTER JOIN
>> job_to_output_dataset AS job_to_output_dataset_1 ON job.id =
>> job_to_output_dataset_1.job_id LEFT OUTER JOIN
>> history_dataset_association AS history_dataset_association_2 ON
>> history_dataset_association_2.id = job_to_output_dataset_1.dataset_id
>> LEFT OUTER JOIN dataset AS dataset_2 ON dataset_2.id =
>> history_dataset_association_2.dataset_id
>> WHERE job.state = %s
>> 2010-06-02 09:50:15,154 INFO sqlalchemy.engine.base.Engine.0x...0e50
>> ['new']
>> sqlalchemy.engine.base.Engine.0x...0e50 INFO 2010-06-02 09:50:15,154
>> ['new']
>> 2010-06-02 09:50:15,157 INFO sqlalchemy.pool.QueuePool.0x...0c90
>> Connection<_mysql.connection open to 'localhost' at 1b0894d0>
being
>> returned to pool
>> sqlalchemy.pool.QueuePool.0x...0c90 INFO 2010-06-02 09:50:15,157
>> Connection<_mysql.connection open to 'localhost' at 1b0894d0>
being
>> returned to pool
>>
>>
>> cheers
>> m
>>
>> --
>> Michael Pheasant
>> Software Engineer
>> Queensland Facility for Advanced Bioinformatics
>> Level 6, QBP
>> University of Queensland, QLD 4072
>> T: +61 (0)7 3346 2070
>> F: +61 (0)7 3346 2101
>>
www.qfab.org
>>
>>
>>
>> On Tue, Jun 1, 2010 at 11:24 PM, Nate Coraor<nate(a)bx.psu.edu> wrote:
>>> Michael Pheasant wrote:
>>>> Using the run.sh script, and the default 'log_level = DEBUG'
>>>> universe_wsgi.ini file setting gives a huge amount of output.
>>>>
>>>> Changing the ini to either log_level = INFO, WARNING or ERROR and i
>>>> get the same output, including the INFO messages every second.
>>>>
>>>> I assumed that WARNING or ERROR would not give the INFO messages; is
>>>> there some way to not see these?
>>> Hi Michael,
>>>
>>> Can you provide an example of which INFO messages still appear? WARNING
>>> is
>>> suppressing everything above the WARNING level for me.
>>>
>>> --nate
>>>
>>>> Cheers
>>>> m
>>>>
>>>> --
>>>> Michael Pheasant
>>>> Software Engineer
>>>> Queensland Facility for Advanced Bioinformatics
>>>> Level 6, QBP
>>>> University of Queensland, QLD 4072
>>>> T: +61 (0)7 3346 2070
>>>> F: +61 (0)7 3346 2101
>>>>
www.qfab.org
>>>> _______________________________________________
>>>> galaxy-dev mailing list
>>>> galaxy-dev(a)lists.bx.psu.edu
>>>>
http://lists.bx.psu.edu/listinfo/galaxy-dev
>>>
>> _______________________________________________
>> galaxy-dev mailing list
>> galaxy-dev(a)lists.bx.psu.edu
>>
http://lists.bx.psu.edu/listinfo/galaxy-dev
>>
>
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