Hi Hans-Rudolf, the problem is that the 18.05 release is missing the viz static files in the proper folder. To be precise /config/plugins/visualizations/*/static needs to be copied to /static/plugins/visualizations/*/static To fix: (make sure you have node 8.x.x and not newer) $ cd client $ ./node_modules/.bin/gulp plugins I am sorry for the inconvenience, we will fix this in the release branch early next week. Martin On Fri, Jun 8, 2018 at 10:00 AM Nicola Soranzo <nicola.soranzo@gmail.com> wrote:
Dear Hans-Rudolf, I think this is being worked on at https://github.com/galaxyproject/galaxy/pull/6297 .
Cheers, Nicola
On 08/06/18 14:57, Hans-Rudolf Hotz wrote:
just adding a little bit more information:
- this problem happens independent of using paste or uwsgi
- as far as I have tested all visualization plugins (with the exception of trackster) are broken. For broken visualizations, other than 'scatterplot', I get the error: "Load function 'load' not found"
Regards, Hans-Rudolf
On 06/05/2018 05:14 PM, Hans-Rudolf Hotz wrote:
Hi all
I am in the process of upgrading our servers to 18.05. And I have encountered an issue with the Visualization tool "Scatterplot, Creates a 2D-scatterplot from tabular datapoints"
I am starting with a simple bed file for chromosome 15 (downloaded with UCSC table browser tool). When I click on the Visualization icon, followed by "Scatterplot", I end up with an near empty page. I only get the title:
Scatterplot of 'UCSC Main on Human: ncbiRefSeq (chr15:20010162-22868384)'
UCSC Main on Human: ncbiRefSeq (chr15:20010162-22868384)
This happens with our development server (after being upgraded from 17.09). It is the same using a new clone of 18.05 code.
It also happens on usegalaxy.eu but it does work on usegalaxy.org
As a side note: on usegalaxy.org, each visualization has its little
icon
(see: 'usegalaxy.org.png'), while on usegalaxy.eu, each visualization just has an eye (see: 'usegalaxy.eu.png')
I hope there is an easy fix for this....
Regards, Hans-Rudolf
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