Thanks for the feedback Shaun. Trackster is under active development, and these bugs were fixed a while back; upgrading Galaxy should cause them to go away. Best, J. On Mar 30, 2012, at 12:48 PM, SHAUN WEBB wrote:
Hi I have noticed a few bugs while using trackster:
1. Multiple versions of visualisation saved. Quite often if I am working on a visualisation I save periodically after adding tracks or bookmarks or display options. When I go back to my visualisation menu there are now several different versions of the same visualisation. This doesn't always happen and I haven't figured out a direct cause yet.
2. While viewing bookmarked regions in my visualisation the whole Galaxy process crashed and needed to be restarted. I found the error below in paster.log.
Other than that Trackster has been a very valuable tool.
Thanks Shaun Webb
Error - <type 'exceptions.IOError'>: [Errno 24] Too many open files: '/storage/home/galaxy/galaxy_dist/database/files/068/dataset_68559.dat' URL: http://bifx-core.bio.ed.ac.uk:8080/tracks/converted_datasets_state?hda_ldda=hda&dataset_id=608cc0a44f2421fa&chrom=chrIX File '/storage/home/galaxy/galaxy_dist/eggs/Paste-1.6-py2.6.egg/paste/exceptions/errormiddleware.py', line 143 in __call__ app_iter = self.application(environ, start_response) File '/storage/home/galaxy/galaxy_dist/eggs/Paste-1.6-py2.6.egg/paste/recursive.py', line 80 in __call__ return self.application(environ, start_response) File '/storage/home/galaxy/galaxy_dist/eggs/Paste-1.6-py2.6.egg/paste/httpexceptions.py', line 632 in __call__ return self.application(environ, start_response) File '/storage/home/galaxy/galaxy_dist/lib/galaxy/web/framework/base.py', line 160 in __call__ body = method( trans, **kwargs ) File '/storage/home/galaxy/galaxy_dist/lib/galaxy/web/framework/__init__.py', line 67 in decorator return simplejson.dumps( func( self, trans, *args, **kwargs ) ) File '/storage/home/galaxy/galaxy_dist/lib/galaxy/web/controllers/tracks.py', line 549 in converted_datasets_state if not standalone_provider.has_data( chrom ): File '/storage/home/galaxy/galaxy_dist/lib/galaxy/visualization/tracks/data_providers.py', line 738 in has_data f, bbi = self._get_dataset() File '/storage/home/galaxy/galaxy_dist/lib/galaxy/visualization/tracks/data_providers.py', line 827 in _get_dataset f = open( self.converted_dataset.file_name ) IOError: [Errno 24] Too many open files: '/storage/home/galaxy/galaxy_dist/database/files/068/dataset_68559.dat'
-- The University of Edinburgh is a charitable body, registered in Scotland, with registration number SC005336.
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: