details: http://www.bx.psu.edu/hg/galaxy/rev/1e408bab8941 changeset: 1512:1e408bab8941 user: Dan Blankenberg dan@bx.psu.edu date: Tue Sep 16 15:23:23 2008 -0400 description: The MetadataCollection object is now created only once per dataset object instance (and when datatype is changed), instead of each time dataset.metadata is called.
The 'no_value' attribute for a metadata element's spec is returned when the metadata element's value is None.
2 file(s) affected in this change:
lib/galaxy/datatypes/metadata.py lib/galaxy/model/__init__.py
diffs (89 lines):
diff -r c3ce08879473 -r 1e408bab8941 lib/galaxy/datatypes/metadata.py --- a/lib/galaxy/datatypes/metadata.py Tue Sep 16 14:26:14 2008 -0400 +++ b/lib/galaxy/datatypes/metadata.py Tue Sep 16 15:23:23 2008 -0400 @@ -151,9 +151,16 @@ """ def __init__(self, parent, spec): self.parent = parent - self.bunch = parent._metadata or dict() if spec is None: self.spec = MetadataSpecCollection() else: self.spec = spec + + #set default metadata values + if not self.parent._metadata: + self.parent._metadata = {} + for name, value in self.spec.items(): + if name not in self.bunch: + self.bunch[name] = value.default + def __iter__(self): return self.bunch.__iter__() def get( self, key, default=None ): @@ -168,19 +175,21 @@ def __nonzero__(self): return self.bunch.__nonzero__() def __getattr__(self, name): - if self.bunch.get( name ): - return self.bunch.get( name ) + if name == "bunch": + return self.parent._metadata + rval = self.bunch.get( name ) + if rval is None: + rval = self.spec.get( name, None ) + if rval: + rval = rval.no_value + return rval + def __setattr__(self, name, value): + if name in ["parent","spec"]: + self.__dict__[name] = value + elif name == "bunch": + self.parent._metadata = value else: - if self.spec.get(name, None): - return self.spec[name].default - else: - return None - def __setattr__(self, name, value): - if name in ["parent","bunch","spec"]: - self.__dict__[name] = value - else: - self.__dict__["bunch"][name] = value - self.bunch = self.parent._metadata = dict( self.bunch ) + self.bunch[name] = value
MetadataElement = Statement(MetadataElementSpec)
diff -r c3ce08879473 -r 1e408bab8941 lib/galaxy/model/__init__.py --- a/lib/galaxy/model/__init__.py Tue Sep 16 14:26:14 2008 -0400 +++ b/lib/galaxy/model/__init__.py Tue Sep 16 15:23:23 2008 -0400 @@ -113,7 +113,7 @@ self.peek = peek self.extension = extension self.designation = designation - self._metadata = metadata or dict() + self.metadata = metadata or dict() self.dbkey = dbkey self.deleted = deleted self.visible = visible @@ -159,9 +159,9 @@ return datatypes_registry.get_datatype_by_extension( self.extension )
def get_metadata( self ): - if not self._metadata: - self._metadata = dict() - return MetadataCollection( self, self.datatype.metadata_spec ) + if not hasattr( self, '_metadata_collection' ): + self._metadata_collection = MetadataCollection( self, self.datatype.metadata_spec ) + return self._metadata_collection def set_metadata( self, bunch ): # Needs to accept a MetadataCollection, a bunch, or a dict self._metadata = dict( bunch.items() ) @@ -191,6 +191,8 @@
def change_datatype( self, new_ext ): self.clear_associated_files() + if hasattr( self, '_metadata_collection' ): + del self._metadata_collection datatypes_registry.change_datatype( self, new_ext ) def get_size( self ): """Returns the size of the data on disk"""