I'm new to galaxy and I discovered during the install process...
That I needed a folder named ../shed_tools that is writable by galaxy.
migrated_tools_conf.xml:<toolbox tool_path="../shed_tools"> shed_tool_conf.xml:<toolbox tool_path="../shed_tools">
I spend a good chuck of time as a new user figuring this out so it's probably worth adding to the docs if it's not there already.
Donny FSU Research Computing Center