Re: [galaxy-dev] NCBI BLAST+ wrappers in Galaxy?

On Mon, Sep 20, 2010 at 6:00 PM, James Taylor james@jamestaylor.org wrote:

Hi Peter, I think a separate loc file for proteins makes sense, easier to maintain backward compatibility that way. Only speaking for myself though.

Hi James,

That works for me. So we keep blastdb.loc as a list of nucleotide only databases, and introduce new files perhaps named blastp_db.loc and rpsblast_db.loc (or maybe blastdb_p.loc and blastdb_rps.loc - I don't mind) for protein and RPS-BLAST databases respectively.

Assuming I produce something generally useful for contribution to the project, would the best route be:

(a) a patch (b) an hg branch from http://bitbucket.org/galaxy/galaxy-central (c) an hg branch from http://bitbucket.org/galaxy/galaxy-dist

Peter