[galaxy-dev] [hg] galaxy 1529: Adding tools to fetch microsatellites and esti...

Thursday, 25 September 2008

details:   http://www.bx.psu.edu/hg/galaxy/rev/ad3f61801a82
changeset: 1529:ad3f61801a82
user:      guru
date:      Wed Sep 24 18:20:39 2008 -0400
description:
Adding tools to fetch microsatellites and estimate their mutabilities.

9 file(s) affected in this change:

test-data/2way.maf
test-data/ortho_ms.tab
test-data/ortho_ms_mut.tab
tool_conf.xml.sample
tools/regVariation/getIndelRates_3way.xml
tools/regVariation/microsats_alignment_level.py
tools/regVariation/microsats_alignment_level.xml
tools/regVariation/microsats_mutability.py
tools/regVariation/microsats_mutability.xml

diffs (1641 lines):

diff -r 447c74d98fe5 -r ad3f61801a82 test-data/2way.maf

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/2way.maf	Wed Sep 24 18:20:39 2008 -0400
@@ -0,0 +1,401 @@
+##maf version=1
+a score=51988
+s hg18.chr1       464 785 + 247249719
ccctcgcggtaccctcagccggcccgcccgcccgggtctgacctgaggagaactgtgctccgccttcagagtaccaccgaaatctgtgcagaggacaacgcagctccgccctcgcggtgctctccgggtctgtgctgaggagaacgcaactccgccggcgcaggcgcagagaggcgcgccgcgccggcgcaggcgcagacacatgctagcgcgtcggggtggaggcgtggcgcaggcgcagagaggcgcgccgcgccggcgcaggcgcagagacacatgctaccgcgtccaggggtggaggcgtggcgcaggcgcagagaggcgcaccgcgccggcgcaggcgcagagacacatgctagcgcgtccaggggtggaggcgtggcgcaggcgcagagacgcaagcctacgggcgggggttgggggggcgtgtgttgcaggagcaaagtcgcacggcgccgggctggggcggggggagggtggcgccgtgcacgcgcagaaactcacgtcacggtggcgcggcgcagagacgggtagaacctcagtaatccgaaaagccgggatcgaccgccccttgcttgcagccgggcactacaggacccgcttgctcacggtgctgtgccagggcgccccctgctggcgactagggcaactgcagggctctcttgcttagagtggtggccagcgccccctgctggcgccggggcactgcagggccctcttgcttactgtatagtggtggcacgccgcctgctggcagctagggacattgcagggtcctcttgctc

+s panTro2.chr15 13361 700 - 100063422
ccctcgcagtaccctcagcccgcccgcccgcccgggtctgacctgaggagaactctgctccgccttcgcagtaccaccgaaatctgtgcagaggagaactcagctccaccctcgcggtgctctccgggtctgtgctgaggagaacgcaactccgccgtcgtaaacgc----------gccgcgccggcgcacgcgcaga----------------------gaggcg------------------gcgcgccgcgccggcgcacgcgcagagacacatgctagcgcgtctcgggg---------------------gagaggcgcaccgcgccggcgcag------agacacatactagcgcgtcctgggg-ggaggtgcggcgctgtcgccgagac-cacgcctatgggcgggggttgcgggg-cgcgtggtgcaggagcaaagtcgcacggagcctgtctgggg-----gcaggtgggctccgtgcaggcgcagaaacgcacgtcgcggcggcgcggcgcagagacgggtggaacctcagtaatcagaaaagccgggctggaccgccccctgcttgcagccgggcactacaggacccgcttgctcacggtgctctgccagtgcgccccctgctggcaactagggcaactgcagggctctcttgcttagagtggtggccagcgggggctgctggctccggggcactgcagggccctcttgcttactgtatagtggtggcacgccgcctgctggcagctagggacattgcagggtcctcttgctc

+
+a score=5767
+s hg18.chr1              1249 62 + 247249719
aaggtgtagtggcagcacgcccacctgctggcagctggggacactgccgggccctcttgctC 
+s panTro2.chr9_random 4665776 62 +   7733331
aaagtgtagtggcagcacgcccgcctgctggcagctggggacactgccgggccctcttgctc 
+
+a score=108196
+s hg18.chr1      1311 1227 + 247249719
CAACAGTACTGGCGG-ATTATAGGGAAACACCCGGAGcatatgctgtttggtctcagtagactcctaaatatgggattcctgggtttaaaagtaaaaaataaatatgtttaatttgtgaactgattaccatcagaattgtactgttctgtatcccaccagcaatgtctaggaatgcctgtttctccacaaagtgtttacttttggatttttgccagtctaacaggtgaAGccctggagattcttattagtgatttgggctggggcctggccatgtgtatttttttaaatttccactgatgattttgctgcatggccggtgttgagaatgactgCGCAAATTTGCCGGATTTCCTTTGCTGTTCCTGCATGTAGTTTAAACGAGATTGCCAGCACCGGGTATCATTCACCATTTTTCTTTTCGTTAACTTGCCGTCAGCCTTTTCTTTGACCTCTTCTTTCTGTTCATGTGTATTTGCTGTCTCTTAGCCCAGACTTCCCGTGTCCTTTCCACCGGGCCTTTGAGAGGTCACAGGGTCTTGATGCTGTGGTCTTCATCTGCAGGTGTCTGACTTCCAGCAACTGCTGGCCTGTGCCAGGGTGCAAGCTGAGCACTGGAGTGGAGTTTTCCTGTGGAGAGGAGCCATGCCTAGAGTGGGATGGGCCATTGTTCATCTTCTGGCCCCTGTTGTCTGCATGTAACTTAATACCACAACCAGGCATAGGGGAAAGATTGGAGGAAAGAT------------GAGTGAGAGCATCAACTTCTCTCACAACCTAGGCCAGTAAGTAGTGCTTGTGCTCATCTCCTTGGCTGTGATACGTGGCCGGCCCTCGCTCCAGCAGCTGGACCCCTACCTGCCGTCTGCTGCCATCGGAGCCCAAAGCCGGGCTGTGACTGCTCAGACCAGCCGGCTGGAGGGAGGGGCTCAGCAGGTCTGGC

TTTGGCCCTGGGAGAGCAGGTGGAAGATCAGGCAGGCCATCGCTGCCACAGAACCCAGTGGATTGGCCTAGGTGGGATCTCTGAGCTCAACAAGCCCTCTCTGGGTGGTAGGTGCAGAGACGGGAGGGGCAGAGCCGCAGGCACAGCCAAGAGGGCTGAAGAAATGGTAGAACGGAGCAGCTGGTGATGTGTGGGCCCACCGGCCCCAGGCTCCTGTCTCCCCCCAGGTGTGTGGTGATGCCAGGCATGCCCTTCCCCAGCATCAGGTCTCCAGAGCTGCAGAAGACGAC

+s panTro2.chr15 14061 1233 - 100063422
caacagtagtggcggGATTATGGGGAAACACCCGGAGCATATGCTGTTTGGTCTCAgtaggctcctaaatatgggattcctggatttaaaagtataaaataaatatgtttaatttgttaactgattaccatcagaattgtactgttctgtaccccaccagcaatgtctaggaatgcctgtttctccacaaagtgtttacttttggatttttgccagtctaacaggtgaAGccctggagattcttattagtgatttgggctggggcctggccatgtgtatttttttaaatttccactgatgattttgctgcatggccggtgttgagaatgactgTGCAAATTTGCCGGATTTCCTTTGCTGTTCCTGCATGTCGTTTAAACGACATTGCCAGCACCGGGTATCGTTCACCATTTTTCTTTTT-----CTTGCCGTCAGCCTTTTCTTTGACCTCTTCTCTCTGTTCATGTGTATTTGCTGTCTCTTAGCCCAGACTTCCCGTGTCCTTTCCACCGGGCCTTTGGGAGGTCACAGGGTCTTGATGCTGTGGTCTTGGTCTGCAGGTGTCTGACTTTCAGCAACTGCTGGCCTGTGCCAGGGTGGAAGCTGAGCACTGGAGTGGAGTTTTCCTGTGGAGAGGAGCCATGCCTAGAGTGGGATGGGCCATTGTTCATATTCTGGCCCCTGTTGTCTGCATGTAACCTAATACCACAACCAGGCATGGGGGAAAGACTGGAGGAAAGATTGGAGAAAAGATGAGTGAGAGGATCAACTTCTCTGACAGCCTAGGCCAGTAAGTAGTGCTTCTGCTCATCTCCTTGGCTGTGATACGTGGCCGGCCCTCGCTCCAGCAGCTGGACCCCTACCTGCCGTCTGCTGCCATCGGAGCCCAAATCCGGGCTGTGACTGCTCAGACCAGCCGGCTGGAGGGAGGGGCTCAGCAGCTCTGGC

TTTGGCCTTGGGATAGCAGGTGGAAGATCAGGCAGGCCATCGCTGCCGCAGAACCCAGTGAATTGGCCTAGGTGGGATCTCTGAGCTGAACAAGCCCTCTCCGGGTGGTAGGTGCAGAGAGGGGAGGGGCAGAGCCGCAGGCACAGCCAAGAGGGCTGAGGAAATGGTAGAACGGAGCAGCTGGTGATGTCTGGGCCCACCGGCCCCAGGCTCCTGTCTCCCCCCAG--GTGTGGTGATGCCAGGCATGCCCTTCCTCAGCATCAGGTCTCCAGAGCTGCAGAAGACGAC

+
+a score=179761
+s hg18.chr1      2538 2022 + 247249719
GGCCGACTTGGATCACACTCTTGTGAGTGTCCCCAGTGTTGCAGAGGTG-AGAGGAGAGTAG-ACAGTGAGTGGGAGTGG-CGTCGCCCCTAGGGCTCTACGGGGCCGGCGTCTCCTGTCTCCTGGAGAGGCTTCGATGCCCCTCCACACCCTCTTGATCTTCCCTGTGATGTCATCTGGAGCCCTGCTGCTTGCGGTGGCCTATAAAGCCTCCTAGTCTGGCTCCAAGGCCTGGCAGAGTCTTTCCCAGGGAAAGCTACAAGCAGCAAACAGTCTGCATGGGTCATCCCCTTCACTCCCAGCTCAGAGCCCAGGCCAGGGGCCCCCAAGAAAGGCTCTGGTGGAGAACCTGTGCATGAAGGCTGTCAACCAGTCCATAGGCAAGCCTGGCTGCCTCCAGCTGGGTCGACAGACAGGGGCTGGAGAAGGGGAGAAGAGGAAAGTGAGGTTGCCTGCCCTGTCTCCTACCTGAGGCTGAGGAAGGAGAAGGGGATGCACTGTTGGGGAGGCAGCTGTAACTCAAAGCCTTAGCCTCTGTTCCCACGAAGGCAGGGCCATCAGGCACCAAAGGGATTCTGCCAGCATAGTGCTCCTGGACCAGTGATACACCCGGCACCCTGTCCTGGACACGCTGTTGGCCTGGATCTGAGCCCTGGTGGAGGTCAAAGCCACCTTTGGTTCTGCCATTGCTGCTGTGTGGAAGTTCACTCCTGCCTTTTCCTTTCCCTAGAGCCTCCACCACCCCGAGATCACATTTCTCACTGCCTTTTGTCTGCCCAGTTTCACCAGAAGTAGGCCTCTTCCTGACAGGCAGCTGCACCACTGCCTGGCGCTGTGCCCTTCCTTTGCTCTGCCCGCTGGAGACGGTGTTTGTCATGGGCCTGGTCTGCAGGGATCCTGCTACAAAGGTGAAACCCAGGAGAGTGTGGAGTCCAGAGTGTTGCCAGGAC

CCAGGCACAGGCATTAGTGCCCGTTGGAGAAAACAGGGGAATCCCGAAGAAATGGTGGGTCCTGGCCATCCGTGAGATCTTCCCAGGGCAGCTCCCCTCTGTGGAATCCAATCTGTCTTCCATCCTGCGTGGCCGAGGGCCAGGCTTCTCACTGGGCCTCTGCAGGAGGCTGCCATT--TGTCCTGCCCACCTTCTTAGAAGCGAGACGGAGCAGACCCATCTGCTACTGCCCTTTCTATAATAACTAAAGTTAGCTGCCCTGGACTATTCACCCCCTAGTCTCAATTTAAGAAGATCCCCATGGCCACAGGGCCCCTGCCTGGGGGCTTGTCACCTCCCCCACCTTCTTCCTGAGTCATTCCTGCAGCCTTGCTCCCTAACCTGCCCCACAGCCTTGCCTGGATTTCTATCTCCCTGGCTTGGTGCCAGTTCCTCCAAGTCGATGGCACCTCCCTCCCTCTCAACCACTTGAGCAAACTCCAAGACATCTTCTACCCCAACACCAGCAATTGTGCCAAGGGCCATTAGGCTCTCAGCATGACTATTTTTAGAGACCCCGTGTCTGTCACTGAAACCTTTTTTGTGGGAGACTATTCCTCCCATCTGCAACAGCTGCCCCTGCTGACTGCCCTTCTCTCCTCCCTCTCATCCCAGAGAAACAGGTCAGCTGGGAGCTTCTGCCCCCACTGCCTAGGGACCAACAGGGGCAGGAGGCAGTCACTGACCCCGAGACGTTTGCATCCTGCACAGCTAGAGATCCTTTATTAAAAGCACACTGTTGGTTTCTGCTCAGTTCTTTATTGATTGGTGTGCCGTTTTCTCTGGAAGCCTCTT-----AAGAACACAGTGGCGCAGGCTGGGTGGAGCCGTCCCCCCATGGAGCACAGGCAGACAGAAGTCCCCGCCCCAGCTGTGTGGCCTCAAGCCAGCCTTCCGCTCCTTGAAGCTGGTCTCCACACAGTGCTGGTTCCGTCACCCCCTCCCAA

GGAAGTAGGTCTGAGCAGCTTGTCCTGGCTGTGTCCATGTCAGAGCAACGGCCCAAGTCTGGGTCTGGGGGGGAAGGTGTCATGGAGCCCCCT

+s panTro2.chr15 15769 2032 - 100063422
GGCCAACTTGGATCACACTCTAATGAGTGTCCCCAGTATTGCAGTGGTGCAGAGGAGAGTAGTACGGTGAGTGGGAGTGGTCGTCTCCCCTAGGGATGTGCTGGGCGGGGGTCTCCTGTCTCGTGGGGAGGCTTGGATGCCCCTCCACACCCTCTTGATGTTCCCTGTGATGTCATCTGGAGCCCTGGTGCTTGCGGTGGCCTATGAAGCTTCCCGGTCTGGCTCCAAGGCCTGGCAGAGTCTTTCCCAGGGAAAGCTACAAGCAGGAAACAGTCCGCATGGGTCATCCCCTTCACTCCCAGCTCTGAGCCCAGGCCAGGGGCCCCCAAGAAAGGCTCTGGTGGAGAACCTGTGCATGAAGGCTGTCAACCAGTCCATAGGCAAGCCTGGCTGCCTCCAGCTGGGTGGACAGACAGGCGCTGGAGAAGGGGAGAAGAGGAAAGGGGGGCTGCCTGCCCTGTCTCCCACCTGAGGCTGAGGAAGGAGAGGGGGATGCACTGTTGGGGAGGCAGCTGTAACTCAAAGCCCTAGCCTCTGTTCCCACGAAGGCAGGGCCATCAGGCACCAAAGGGATTCTGCCAGCATAATGCTCCTGGACCAGTGATACACCCGGCACCCTGTCCTGGACAAGCTGTTGGCCTGGATCTGAGCCCTCGTGGAGCTCAAAGCCACCTTTGGTTCTGCCATTGCTGCTGTGTGGAAGTTCAGTCCTGCCTTTTCCTTTCCCGAGAGGCTCCACCACCCCGAGATCGCACTTCTCACTGCCTTTTGTCTGCCCAGTTTCACCAGAAGTAGGCCTCTTCCTGACAGGCAGCTGCACCACTGCCTGGCGCTGCGCCCTTCCTTTGCTCTGCCCGCTGGAGACGGTGTTTGTCATGGGCCTGGTCTGCAGGGATCCTGCTACAAAGGTGAAACCCAGGAGAGTGTGGAGTCCAGAGTGTTGCCAGGAC

CCAGGCACAGGCATTAGTGCCCGTTGGAGAAAACAGGGGAATCCCAAAGAAATGGTGAGTCCTGGCCATCCGTGAGATCTTCCCAGGGCAGCTCCCCTCTGTGGAATCCAATCTGTCTTCCATCCTGCGTGGCAGAGGGCCAGGCTTCTCACTGGGCCTCTGCAGGAGGCTGCCATTTCTGTCCTGCCCACCTTCTAAGAAGCGAGACGGAGGACACCCATCTGCTTCTGCCCTTTCCATAATAACTAAAGTTAGCTGCCCTGGACTATTCACCCCCTAGTCTCTATTTAAAAAGATCCCCATGGCCACAGGGCCCCTGCCTGGGGGCTTGTCACCTCCCCCACCTTCTTCCTGAGTCACTTCTGCAGCCTTGCTCCCTAACCTGCCCCACAGCCTTGCCTGGATTTCTATCTCCCTGGCTTGGTGCCAGTTCCTCCAAGTCGATGGCACCTCCCTCCCTCTCAACTACTTGAGCAAACTTGAAGACATCTTCAACCCCAACACCAGCAATTGTGCCAAGGGCCATTAGGCTCTCAGCATGACTATTTTTAGAGACCCCGTGTCTGTCACTGAAACCTTTTTCGTGGGAGACTATTCCTCCCATCTGCAACAGCTGCCCCTGCTGACTGCCCTTCTCTCCTCCCTCTCATCCCAGAGAAACAGGTCAGCTGGGAGCTTCTGCCCCCACTGCCTAGGCACCAACAGGGGCAGGAGGCAGTCACTGACCCCGAGACGTTTGCATCCTGCACAGCTAGAGGTCCTTAATTAAAAGCACACTGTTGGTTTCTGCTCAGTTCTTTATTGATTGGTGTGCCATTTTCTCTGGAAGCCTCTTTAGAGAAGAACACACTGGTGCAGGCTGGCTGGAGCTGTCCCCCCATGGAGCACAGGCAGACAGAAGTCCCCGCCCCAGCTGTGTGGCCTCAAGCCAGCCTTCCGCTCCTTGAAGCTGGTCTCCACACAGTGCTGGTTCCGTCACCCCCTCCCAG

GGAAGCAGGTCTCAGCAGCTTGTCCTGGCTGTGTCCGTGTCAGAGCAACGGCCCAAGTCTGGGTCTGGGGGGGAAGGTGTCATGGAGCCCCCT

+
+a score=433563
+s hg18.chr1      4560 4714 + 247249719
ACGATTCCCAGTCGTCCTCGTCCTCCTCTGCCTGTGGCTGCTGCGGTGGCGGCAGAGGAGGGATGGAGTCTGACACGCGGGCAAAGGCTCCTCCGGGCCCCTCACCAGCCCCAGGTCCTTTCCCAGAGATGCCTGGAGGGAAAAGGCTGAGTGAGGGTGGTTGGTGGGAAACCCTGGTTCCCCCAGCCCCCGGAGACTTAAATACAGGAAGAAAAAGGCAGGACAGAATTACAAGGTGCTGGCCCAGGGCGGGCAGCGGCCCTGCCTCCTACCCTTGCGCCTCATGACCAGCTTGTTGAAGAGATCCGACATCAAGTGCCCACCTTGGCTCGTGGCTCTCACTGCAACGGGAAAGCCACAGACTGGGGTGAAGAGTTCAGTCACATGCGACCGGTGACTCCCTGTCCCCACCCCCATGACACTCCCCAGCCCTCCAAGGCCACTGTGTTTCCCAGTTAGCTCAGAGCCTCAGTCGATCCCTGACCCAGCACCGGGCACTGATGAGACAGCGGCTGTTTGAGGAGCCACCTCCCAGCCACCTCGGGGCCAGGGCCAGGGTGTGCAGCAccactgtacaatggggaaactggcccagagaggtgaggcagcttgcctggggtcacagagcaaggcaaaagcagcgctgggtacaagctcaAAACCATAGTGCCCAGGGCACTGCCGCTGCAGGCGCAGGCATCGCATCACA-----CCAGTGTCTGCGTTCACAGCAGGCATCATCAGTAGCCTCCAGAGGCCTCAGGTCCAGTCTCTAAAAATATCTCAGGAGGCTGCAGTGGCTGACCATTGCCTTGGACCGCTCTTGGCAGTCGAAGAAGATTCTCCTGTCA--GTTTGAGCTGGGTGAGCTTAGAGAGGAAAGCTCCACTATGGCTCCCAAACCAGGAAGGAGCCATAGCCCAGGCAGGAGGGCTGAGGACCTCTGGT

GGCGGCCCAGGGCTTCCAGCATGTGCCCTAGGGGAAGCAGGGGCCAGCTGGCAAGAGCAGGGGGTGGGCAGAAAGCACCCGGTGGACTCAGGGCTGGAGGGGAGGAGGCGATCTTGCCCAAGGCCCTCCGACTGCAAGCTCCAGGGCCCGCTCACCTTGCTCCTGCTCCTTCTGCTGCTGCTTCTCCAGCTTTCGCTCCTTCATGCTGCGCAGCTTGGCCTTGCCGATGCCCCCAGCTTGGCGGATGGACTCTAGCAGAGTGGCC-AGCCACCGGAGGGGTCAACCACTTCCCTGGGAGCTCCCTGGACTGGAGCCGGGAGGTGGGGAACAGGGCAAGGAGGAAAGGCTGCTCAGGCAGGGCTGGGGAAGCTTACTGTGTCCAAGAGCCTGCTGGGAGGGAAGTCACCTCCCCTCAAACGAGGAGCCCTGCGCTGGGGAGGCCGGACCTTTGGAGACTGTGTGTGGGGGCCTGGGCACTGACTTCTGCAACCACCTGAGCGCGGGCATCCTGTGTGCAGATACTCCCTGCTTCCTCTCTAGCCCCCACCCTGCAGAGCTGGACCCCTGAGCTAGCCATGCTCTGACAGTCTCAGTTGCACACACGAGCCAGCAGAGGGGTTTTGTGCCACTTCTGGATGCTAGGGTTACACTGGGAGACACAGCAGTGAAGCTGAAATGAAAAATGTGTTGCTGTAGTTT-----GTTATTAGACCCCTTCTTTCCATTGGTTTAATTAGGAATGGGGAACCCAGAGCCTCACTTGTTCAGGCTCCCTCTGCCCTAGAAGTGAGAAGTCCAGAGCTCTACAGTTTGAAAACCACTATTTTATGAACCAAGTAGAACAAGATATTTGAAATGGAAACTATTCAAAAAATTGAGAATTTCTGACCACTTAACAAACCCACAGAAAATCCACCCGAGTGCACTGAGCACGCCAGAAATCAGGTGGCCTCAAAGAGCTGCTCCCACCTGAAGGAGACGCGCTG

CTGCTGCTGTCGTCCTGCCTGGCGCCTTGGCCTACAGGGGCCGCGGTTGAGGGTGGGAGTGGGGGTGCACTGGCCAGCACCTCAGGAGCtgggggtggtggtgggggcggtgggggtggtg---------ttagtACCCCATCTTGTAGGTCTGAAACACAAAGTGTGGGGTGTCTAGGGAAGAAGGTGTGTGACCAGGGAGGTCCCCGGCCCAGCTCCCATCCCAGAACCCAGCTCACCTACCTTGAGAGGCTCGGCTACCTCAGTGTGGAAGGTGGGCAGTTCTGGAATGGTGCCAGGGGCAGAGGGGGCAATGCCGGGGCCCAGGTCGGCAATGTACATGAGGTCGTTGGCAATGCCGGGCAGGTCAGGCAGGTAGGATGGAACATCAATCTCAGGCACCTGGCCCAGGTCTGGCACATAGAAGTAGTTCTCTGGGACCTGCAAGATTAGGCAGGGACATGTGAGAGGTGACAGGGACCTGCAGGGGCAGCCAACAAGACCTTGTGTGCACCTCCCATGGGTGGAATAAGGGGCCCAACAGCCTTGACTGGAGAGGAGCTCTGGCAAGGCCCTGGGCCACTGCACCTGTCTCCACCTCTGTCCCACCCCTCCCACCTGCTGTTCCAGCTGCTCTCTCTTGCTGATGGACAAGGGGGCATCAAACAGCTTCTCCTCTGTCTCTGCCCCCAGCATCACATGGGTCTTTGTTACAGCACCAGCCAGGGGGTCCAGGAAGACATACTTCTTCTACCTACAGAGGCGACATGGGGGTCAGGCAAGCTGACACCCGCTGTCCTGAGCCCATGTTCCTCTCCCACATCATCAGGGGCACAGCGTGCACTGTGGGGTCCCAGGCCTCCCGAGCCGAGCCACCCGTCACCCCCTGGCTCCTGGCCTATGTGCTGTACCTGTGTCTGATGCCCTGGGTCCCCACTAAGCCAGGCCGGGCCTCCCGCCCACACCCCTCGGCCCTGCCCTCTGGCCAT

ACAGGTTCTCGGTGGTGTTGAAGAGCAGCAAGGAGCTGACAGAGCTGATGTTGCTGGGAAGACCCCCAAGTCCCTCTTCTGCATCGTCCTCGGGCTCCGGCTTGGTGCTCACGCACACAGGAAAGTCCTTCAGCTTCTCCTGAGAGGGCCAGGATGGCCAAGGGATGGTGAATATTTGGTGCTGGGCCTAATCAGCTGCCATCCCATCCCAGTCAGCCTCCTCTGGGGGACAGAACCCTATGGTGGCCCCGGCTCCTCCCCAGTATCCAGTCCTCCTGGTGTGTGACAGGC-----TATATGCGCGGCCAGCAGACCTGCAGGGCCCGCTCGTCCAGGGGGCGGTGCTTGCTCTGGATCCTGTGGCGGGGGCGTCTCTGCAGGCCAGGGTCCTGGGCGCCCGTGAAGATGGAGCCATATTCCTGCAGGCGCCCTGGAGCAGGGTACTTGGCACTGGAGAACACCTGTGGACACAGGGACAAGTCTGAGGGGGCCCCAAGAGGCTCAGAGGGCTAGGATTGCTTGGCAGGAGAGGGTGGAGTTGGAAGCCTGGGCGAGAAGAAAGCTCAAGGTACAGGTGGGCAGCAGGGCAGAGACTGGGCAGCCTCAGAGGCACGGGGAAATGGAGGGACTGCCCAGTAGCCTCAGGACACAGGGGTATGGGGACTACCTTGATGGCCTTCTTGCTGCCCTTGATCTTCTCAATCTTGGCCTGGGCCAAGGAGACCTTCTCTCCAATGGCCTGCACCTGGCTCCGGCTCTGCTCTACCTGCTGGGAGATCCTGCCATGGAGAAGATCACAGAGGCTGGGCTGCTCCCCACCCTCTGCACACCTCCTGCTTCTAACAGCAGAGCTGCCAGGCCAGGCCCTCAGGCAAGGGCTCTGAAGTCAGGGTCACCTACTTGCCAGGGCCGATCTTGGTGCCATCCAGGGGGCCTCTACAAGGATAATCTGACCTGCAGGGTCGAGGAGTTGACGGTGCTGAGTTC

CCTGCACTCTCAGTAGGGACAGGCCCTATGCTGCCACCTGTACATGCTATCTGAAGGACAGCCTCCAGGGCACACAGAGGATGGTATTTACACATGCACACATGGCTACTGATGGGGCAAGCACTTCACAACCCCTCATGATCACGTGCAGCAGACAATGTGGCCTCTGCAGAGGGGGAACGGAGACCGGAGGCTGAGACTGGCAAGGCTGGACCTGAGTGTCGTCACCTAAATTCAGACGGGGAACTGCCCCTGCACATACTGAACGGCTCACTGAGCAAACCCCGAGTCCCGACCACCGCCTCAGTGTGGTCTAGCTcctcacctgcttccatcctccctggtgcggggtgggcccagtgatatcagctgcctgctgttccccagatgtgccaagtgcattcttgtgtgcttgcatctcatggaacgccatttccccagacatccctgtggctggctcctGATGCCCGAGGCCCAAGTGTCTGATGCTTTAAGGCACATCACCCCACTCATGCTTTTCCATGTTCTTTGGCCGCAGCAAGGCCGCTCTCACTGCAAAGTTAACTCTGATGCGTGTGTAACACAACATCCTCCTCCCAGTCGCCCCTGTAGCTCCCCTACCTCCAAGAGCCCAGCCCTTGCCCACAGGGCCACACTCCACGTGCAGAGCAGCCTCAGCACTCACCGGGCACGAGCGAGCCTGTGTGGTGCGCAGGGATGAGAAGGCAGAGGCGCGACTGGGGTTCATGAGGAAGGGCAGGAGGAGGGTGTGGGATGGTGGAGGGGTTTGAGAAGGCAGAGGCGCGACTGGGGTTCATGAGGAA

+s panTro2.chr15 18045 4735 - 100063422
AGGATTCCCAGTCGTCCTCATCCTCCTCTGCCTGTGGCTGCTGCGGTGGCGGCAGAGGAGGGATGGAGTCTGACACGCGGGCAAAGGCTCCTCCGGGCCCCTCACCAGCCCCAGGTCCTTTCCCAGAGATGCCTGGAGGGAAAAGGCTGAGTGAGGGTGGTTGGTGGGAAACCCTGCTTCCCCCAGCCCCCAGAGACTTAAATACAGGAAGAAAAAGGCAGGACACAATTACAATGTGCCGGCCCAGGGCGGGCAGCGGCCCTGCCTCCTACCCTTGCGCCTCATGACCAGCTTGTTGAAGAGATCCGACATCAAGTCCCCACCTTGGCTCGTGGCTCTCACTGCAACGGGAAAGCCACAGACTGGGGTGAAGAGTTCAGTCACATGTGACCGGTGGCTCCCTGTCCCCAGCCCCATGACACTCCCCAGCCCTCCAAGGCCACTGTGTTTCCCAGTTAGCTCAGAGCCTCAGTCGATCCCTGACCCAGCACCGGGCGCTGATGAGAAAGCGGCTGTTTGAGGAGCCACCTCCCAGCCACCTTGGGGACAGGGCCAGGGTGTGCAGCACcactgtacaatggggaaactggcccagagaggtgaggcagcttgcctggggtcacagagcaaggcaaaagcagcgctgTGTACAAGCTCAAAACCATAGTGCCCAGGGCATTGCCACTGCAGGCGCAGGCATCGCATCACATCACACCAGTGTCTGCGTTCACAGCAGGCATCATCAGTAGCCTCAAGAGGCCTCAGGTCCAGTCTCTAAAAATATCTCAGGAGGCTGCAGTGGCTGACCATTGCCTTGGACCGCTCTTGGCAGTCGAAGAAGATTCTCCTGTCACAGTTTGAGCTGGGTGAGCTTAGAGAGGAAAGCTCCACTATGGCTCCCAAACCAGGAAGGAGCCATAGCCCAGGCAGGAGGGCTGAGGACCTCTGGT

GGCGGCCCAGGGATTCCAGCATGTGCCCTAGGAGAAGCAGGGGCCAGCTGCCAAGAGCAGGGGGTGGGCAGAAAGCACCCAGTGGACTCAGGGCTGGAGGGAAGGAGGCGATCTTGCCCAAGGCCCTCCGACCGCAGGCTCCAGGGCCCGCtcaccttgctcctgctccttctgcttcttcttctccagctttcgctccttcACGCTGCGCAGCTTGGCCTTGCCGATGCCCCCAGCTTGGCGGATGGATTCTAGCAGAGTGGCCCGGCCACCGGAGGGGTCGACCACTTCCCTGGGAGCTCCCTGGACTGGAGCCGGGAGGTGGGGAACAGGGCAAGGAGGAAAGGCTGCTCAGGCAGGGCTGGGGAAGCTTATTGTATCCAAGAGCCTGCTGGGAGGGAAGTCACCTCCCCTCAAACGAGGAGCCCCGCGCTGGGGAGGCCGGACCTTTGGAGACTGTGTG---GGGCCTGGGCACTGACTTCGGCAACCACCTGAGTGCAGGCATCCTGTGTGCAGATACTCCCTGCTTCCTCTCTAGCCCCCACCCTGCAGAGCTGGACCCCTGAGCTAGCCATGCTCTGACAGTCTCAGTGGCACACATGAGCCAGCAGAGGGGTTTTGTGCCACTTCTGGATGCTAGGGTTAGACTGGGAGATACAACAGTGAAGCTGAGAAGAAAAATGTGTTGCTGTAGTTTAGTTGGTTATTAGACCCCTTCTTTCCATTGGTTTAATTAGGAATGGGGAACCCAGAGCCTCACTTGTTCAGGCTCCCTCTGCCCTAGAAGTGAGAAGTCCAGAGCTCTACAGTTTGAAAACCACTATTTTATGAACCAAGTAGAACAAGATATTTGAAATGGGAACTATTCAAAAAATTGAGAATTTCTGACCACTTAACAAACCCACAGAAAATACACCCGAGTGCACTGAGCACGCCAGAAATGAGGTGGCCTCAAAGAGCTGCTCCCACCTGAAGGAGACGCGCTG

CTGCTGCTGTCGTCCTGCCTGGCGCCTTGGCCTACAGGGGCCGCGGTTGAGGGTGGGAGTGGGGGTGCACTGGCCAGCACCTCAGGAGCtgggggaggtggtgggggcggtgggggtggtgggggtgctgttagtACCCCATCTTGTAGGTCTGAAACACAAAGTGTGGGGTGTCTAGGGAAGAAGGTGTGTGAGCAGGGAGGTCCCCAGCCCAGCTCCCATCCCAGAGCCCAGCTCACCTGCCTTGAGAGGCTCGGCTACCTCAGTGTGGAAGGTGGGCAGTTCTGGAATGGTGCCAGGGGCAGAGGGGGCAATGCCGGGGCCCAGGTCGGCACTGTACATGAGGTCGTTGGCAATGCCGGGCAGGTCAGGCAGGTAGGATGGAACATCAATCTCAGGCACCTGGCCCAGGTCTGGCACATAGAAGTAGTTCTCTGGGACCTGCAAGATTAGGCAGGGACATGTGAGAGGTGACAGGGACCTGCAGGGGCAGCCAACAAGACCTTGTGTGCACCTCCCATGGGTGGAATAAGGGGCTCAACAGCCTGGACTGGAGAGGAGCTCTGGCAAGGCCCTGGGCCACTGCACCTGTCTCCACCTCTGTCCCGCCCCTCCCACCTGCTGTTCCAGCTGCTCTCTCTTGCTGATGGACAAGGGGGCATCAAACAGCTTCTCCTCTGTCTCTGCCCCCAGCATCACATGGGTCTTTGTTACAGCACCAGCCAGGGGGTCCAGGAAGACATACTTCTTGTACCTACAGGGGCGACATGGGGGTCAGGCAAGCTGACACCTGCTGTCCTGAGCCCATGTTCCTCTCCCACATCATCAGGGGCACAGTGTGCACCGTGGGGTCCCAGGCCTCCCGAGCCGAGCCACCCGTCACCCCCTGGCTCCTGGCCTATGTGCTGTACCTGTGTCTGATGCCCTGGGTCCCCACTAAGCCAGGCCGGGCCTCCCGCCCACACCCCTCGGCCCTGCCTTCTGGCCAT

ACAGGTTCTCGGTGGTGTTGAAGAGCAGCAAGGAGCTGACAGAGCTGATGTTGCTGGGAAGACCCCCAAGTCCCTCTTCTGCATCGTCCTCGGGCCCCGGCTTGGTGCTCACGCACACAGGAAAGTACTTCAGCTTCTCCTGGGAGGGCCAGAATGGCCAAGGGATGGTGAATATTTAGTGCCGGGCCTAATCAGCTGCCACCCCATCCCGGTCAGCCTCCTCTGGGGGACAGAACCCT-TGGTGGCCCCGGCTCCTCCCCAGTATCCAGTCCTCCTGGTGTGTGACAGGCTAAGTTATGTGCGCGGCCAGCAGACCTGCAGGGCCCGCTCATCCAGGGGGCGGTGCTTGCTCTGGATCCTGTGGCGGGGGCGTCTCTGCAGGCCAGGGTCCTGGGCGCCCGTGAAGATGGAGCCATATTCCTGCAGGCGCTCTGGAGCAGGGTACTTGGCACTGGAGAACACCTGTGGACACAGGGACAAGTCTGAGGGGGCCCCAAGAGGCTCAGAGGGCTAGGATTGCTTGGCAGGAGAGGGTGGAGTTGGGAGCCTGGGCGAGAAGAAAGCCCAAGGTAGAGGTGGGCAGCAGGGCAGAGACTGGGCAGCCTCAGAGGCACGGGGAAATGGAGGGACTGCCCAGTAGCCTCAGGACACAGGGGCATGGGGACTACCTTGATGGCCTTCTTGCTGCCCTTGATCTTCTCAATCTTGGCCTGGGCCAAGGAGACCTTCTCTCCAATGGCCTGCACCTGGCTCCGGCTCTGCTCTACCCGCTGGGAGATCCTGCCATGGAGAAGATCACAGAGGCTGGGCTGCTCCCCACCCCCTGCACACCTCCTGCTCCTAACAGCAGAGCTGCCAGGCCAGGCCCTCAGGCAAGGGCTCTTAAGTCAGGGTCACCTGCTTGCCAGGGCTGATCTTGGTGCCATCCAGGGGGCCTCTACAAGGATAATCTGACCTGCAGGGTCGAGGAGTTGATGGTACTGAGTTC

CCTGCACTCTCAGTAGGGACAGGCCCTATGCTGCCACCTGTACATGCTATCTGAAGGACAGCCTCCAGGGCACACAGAGGATGGTATTTACACATGCACACATGGCTATTGATGGGGCAAGCATTTCACAACCCCTCATGATCACGTGCAGCAGACAAAGTAGCCTCTGCAGAGGGGGAATGGAGACCGGAGGCTGAGACTGGCAAGGCTGGACCTGAGTGTCATCACCTAAATTCAGACGGGGAACTGCCCCCGCACATAGTGAACGGCTCACTGAGCAAACCCTGAGTCCCAACCACCGCCTCAGTGTGGTCTAGCTcctcacctgcttccatcctccctggtgcggggtgggcccagtgatatcagctgcctgctgttccccagatgtgccaagtgcattcttatgtgcttgcatctcatggaacaccatttccccagacatgcctgtggctggctcctGGTGCCCGAGGCCCAAGTGTCTGATGCTTTAAGGCACATCACCCCACTCATGCTTTTCCATGTTCTTTGGCCGCAGCAAGGCCGCTCTCACTGCAAAGTTAACTCTGATGCGTGTGTA--ACAACATCCTCCTCCCAGTCGCCCCTGTAGCTCCCCTACCTCCAAGAGCCCAGCCCTTGCCCACAGGGCCACACTCCACGTGCAGAGCAGCCTCAGCACTCACCGGGCACGAGCGAGCCTGTGTGGTGCGCAGGGATGAGAAGGCAGAGGCGCGACTGGGGTTCGTGAGGAAAGGCAGGAGGAGGGTGTGGGATGGTGGAGGGGTTTGAGAAGGCAGAGGCGCGACTGGGGTTCATGAGGAA

+
+a score=94959
+s hg18.chr1      9274 1037 + 247249719
AGGGAGGGGGAGGATGTGGGATGGTGGAGGGGCTGCAGACTCTGGGCTAGGGAAAGCTGGGATGTCTCTAAAGGTTGGAATGAATGGCCTAGAATCCGACCCAATAAGCCAAAGCCACTTCCACCAACGTTAGAAGGCCTTGGCCCCCAGAGAGCCAATTTCACAATCCAGAAGTCCCCGTGCCCTAAAGGGTCTGCCCTGATTACTCCTGGCTCCTTGTGTGCAGGGGGCTCAGGCATGGCAGGGCTGGGAGTACCAGCAGGCACTCAAGCGGCTTAAGTGTTCCATGACAGACTGGTATGAAGGTGGCCACAATTCAGAAAGAAAAAAGAAGAGCACCATCTCCTTCCAGTGAGGAAGCGGGACCACCACCCAGCGTGTGCTCCATCTTTTCTGGCTGGGGAGAGGCCTTCATCTGCTGTAAAGGGTCCTCCAGCACAAGCTGTCTTAATTGACCCTAGTTCCCAGGGCAGCCTCGTTCTGCCTTGGGTGCTGACACGACCTTCGGTAGGTGCATAAGCTCTGCATTCGAGGTCcacaggggcagtgggagggaactgagactggggagggacaaaggctgctctgtcctggtgctcccacaaagg--agaagggctgatcactcaaagttgcgaacaccaagctcaacaatgagccctggaaaatttctggaatggattattaaacagagagtctgtaagcacttagaaaaggccgcggtgagtcccaggggccagcactgctcgaaatgtacagcatttctctttgtaacaggattattagcctgctgtgcccggggaaaacatgcagcacagtgcatctcgagtcagcaggattttgacggcttctaacaaaatcttgtagacaagatggagctatgggggttggaggagagaacatataggaaaaatcagagccaaatgaaccacagccccaaagggcacagtt
 gaacaatggactgattccagccttgcacggagggatctggcagagtccatccagttcattcaacacctggttagaaaactggggccagc

+s panTro2.chr15 22920 1038 - 100063422
AGGCAGGAGGAGGGTGTGGGATGGTGGAGGGGCTGCAGACTCTGGGCTTGGGAAAGCTGGGGTGTCTCTAAAGGTTGGAATGAATGGCCTAGAATCGGACCCAATAAGCCAAAGCCACTTCCACCAACGTTAGAAGGCCTTGGCCCCCAGAGAGCCAATTTCACAATCCAGGAGTCCCCGTGCCCTAATGGGTCTGCCCTGATTACTCCTGGCTCCTTGTGTGCAGGGGGCTCAGGCATGGCAGGGCTGGGAGTACCAGCAGGCACTCAAGCGGCTTAAGTGTTCCATGACAGACTGGTATGAAGGTGGCCACAATTCAGAAAGAAAAAAGAAGAGCACCATCTCCTTCCAGTGAGGAAGCGGGGCCACCACCCAGCGTGTGCTCCATCTTTTCTGGCTGGGGAGAGGCCTTCATCTGCTGTAAAGGGTCCTCCAGCACAAGCTGTTTTAATTTACCCTAGTTCCCAAGGCAGCCTCATTCTGCCTTGGGTGCTGACACGACCTTCGGTAGGTGCATAAGCTCTGCATTCGAGGTCcacaggggcagtgggagggaactgagactggggagggacaaaggctgctctgtcctggtgctcccacaaaggacagaagggctgatcactcaaagttgcgaacaccaagctcaacaatgagccctggaaaatttctggaatggattattacacagagagtctgtaagcacttagaaaaggccgcggtgagtcccaggggccagcactgctcgaagtgtacagcatttctctttgtaacaggattagtagcttgctgtgcccggggagaacatgcagcacagcgcatctcgagtcagcaggatttcgacggcttctaacaaaatcctgtagacaagatggagctatgggggttggaggagagaacatatagg-aaaatcagagccaaatgaaccacagccccaaagggcacagtt
 gaacaatggactgattccagccttgcacggagggatctggcagagtccatccggttcATTCAACACCTGGTTAGAAAACTGGGGCCAGC

+
+a score=34201
+s hg18.chr1             10311 370 + 247249719
acacaggggaagggtaagctggtttcatgatcgaatcaaggctcagacaatttttaaaggccagagggtagactgcaatcaccaagatgaaatttacaaggaacaaatgtgaagcccaacatttaggttttaaaaatcaagcgtataaatacagaaggtggagggaacttgctttagacacagttcaggtgaagaaagacctggaaacttctgttaactataagctcagtaggggctaaaagcatgttaatcggcataaaaaggcaatgagatcttaggGCACACAGCTCCCCGCCCCTCTTCTGCCCTTCATCCTTCTTTCAATCAGCAGGGACCGTGCACTCTCTTGGAGCCACCACAGAAAACAGAG

+s panTro2.chr9_random 4675777 370 +   7733331
acacaggggaagggtaagttggtttcatgatcgaatcaaggctcagacaattttcaaaggccagagggtagactgcaatcacccagatgaaatttacaaggaacaaatgtgaagcccaacatttaggttttaaaaatcaagcgtataaatatagaaggtggagggaacttgttttagacacagttcaggtgaagaaagacctggaaacttctgttaactataagctcagtaggggctaaaagcatgttaatcggcataaaaaggcaatgagatcttaggGCACACAGCTCCCCGCCCCTCTTCTGCCCTTCATCCTTCTTTCAATCAGCAGGGACGGTGCACTCTCTTGGAGCCACCACAGAAAACAGAG

+
+a score=11150
+s hg18.chr1        10770 199 + 247249719
CAGAGCAGGAGGAGAGAGCACAGCCTGCAATGCTAATTTGCCAGGAGCTCACCTGCCTGCGTCACTGGGCACAGACGCCAGTGAGGCCAGAGGCCGGGCTGTGCTGGGGCCTGAG-CCGGGTGGTGGGGAG-------AGAGTCTCTCCCCTGCCC--CTGTCTCTTCCGTGCAGGAGG---------------AGCATGTTTAAGGGGACGGGTTCAAAGCTG

+s panTro2.chr12 77693524 219 - 135371336
CAGAGCAGGAGGAGAGAGCATGGCCAGGAATGCTAATTTGCCAGGAGCTCACCTGCCTGCGTCACAAGGCACAGGTGCCAATGAGGCCAGGGTCCAGTCTG-----GGGCATGAGATGGGGTGGTGGGGAGGAGAGAGACAGTCTCTCCTCTACCCACCTGTCTCTTCTGTGCAGGTGGTTTCCGAGCAGGTGAAGCACATTTAAAGGGGGAGGTTCTAAACTG

+
+a score=30487
+s hg18.chr1             10997 330 + 247249719
ACAACGAAAAGCCCACTAGCTTGTCCAGTGCCACAGGAGGGGCAAGTGGAGGAGGAGAGGTGGCGGTGCTCCCCACTCCACTGCCAGTCGTCACTGGCTCTCCCTTCCCTTCATCCTCGTTCCCTATCTGTCACCATTTCCTGTCGTCGTTTCCTCTGAATGTCTCACCCTGCCCTCCCTGCTTGCAAGTCCCCTGTCTGTAGCCTCACCCCTGTCGTATCCTGACTACAATAACAGCTTCTGGGTGTCCCTGGCATCCACTCTCTCTCCCTTCTTGTCCCTTCCGTGACGGATGCCTGAGGAACCTTCCCCAAACTCTTCTGTCCCATC

+s panTro2.chr9_random 4677170 330 +   7733331
ACAACGAAAAGCCCACTTGCTTGTCCAGTGCCACAGGAGGGGCAAGTGGAGGAGGAGAGGTGGCGGTGCTCCCCACTCCACTGCCAGTCATCACTGGCTCTCCCTTCCCTTCATCCTCGTTCCCTATCTGTCACCATTTCCTGTCGTCGTTTCCTCTGAATGTCTCACCCTGCCCTCCCTGCTTGCAAGTCCCCTGTCTGTAGCCTCACCCCTGTCACATCCTGACTACAATAACAGCTTCTGGGTGTCCCCAGCATCCACTCTCTCTCCCTTCTTGTCCCTTCCGTGATGGATGCTTGAGGAACCTTCCCCAAACTCTTCCGTCCCATC

+
+a score=780471
+s hg18.chr1     11327 8563 + 247249719
CCTGCCCTGCTCAAAATCCAATCACAGCTCCCTAACACGCCTGAATCAACTTGAAGTCCTGTCTTGAGTAATCCGTGGGCCCTAACTCACTCATCCCAACTCTTCACTCACTGCCCTGCCCCACACCCTGCCAGGGAGCCTCCCGTGGCACCGTGGGGACACAAAGGAACCAGGGCAAAGCTCCCTCAGCCCCATTCAAAGAGGCCTGGCCCACAGGCTCACGGAAAGTCAGCCTCTCATGCCCCGAGAGCTGAGTGCAAGGGAGAGGCAGCGCTGTCTGTGCTTCCCATGCAGAAGCACCCCCCTCCCACCCCTGTGCAGGCCGGCCTTCGCGGCAGACCACCATACACCACGTTCCAAGCCACACTGAGGCCTCCCTCCAAGCCTGCAGCCCCCATTTCCAGACCCTGCCAGGGCAACCTGCATATCCACCTCCCTACCCTGCCCCCCTCTTCCAGGAGTCTGCCCTATGTGGAGTAAGCACgtggttttcctcttcagcaactatttcctttttactcaagcaatggccccatttcccttggggaatccatctctctcgcaggcttagtcccagagcttcaggtggggctgcccacagagctcctcagtctaagccaagtggtgtgtcatagtcccctggccccattaatggattctgggatagacatgaggaccaagccaggTGGGATGAGTGAGTGTGGCTTCTGGAGGAAGTGGGGACACAGGACAGCATTCTTTCCTGCTGGACCTGACCCTGTGTCATGTCACCTTGCTACCACGAGAGCATGGCCTGTCTGGGAATGCAGCCAGACCCAAAGAAGCAAACTGACATGGAAGGAAAGCAAAACCAGGCCCTGAGGACATCATTTTAGCCCTTACTCCGAAGGCTGCTCTACTGATTGGTTAATTTTTGCTTAGCTTGGTCTGGGGAGTTCTGACAGGCGTGC

CACCAATTCTTACCGATTTCTCTCCACTCTAGACCCTGAGAAGCCCACGCGGTTCATGCTAGCAATTAACAATCAATCTCGCCCTATGTGTTCCCATTCCAGCCTCTAGGACACAGTGGCAGCCACATAATTGGTATCTCTTAAGGTCCAGCACGAGGTGGAGCACATGGTGGAGAGACAGATGCAGTGACCTGGAACCCAGGAGTGAGGGAGCCAGGACTCAGGCCCAAGGCTCCTGAGAGGCATCTGGCCCTCCCTGCGCTGTGCCAGCAGCTTGGAGAACCCACACTCAATGAACGCAGCACTCCACTACCCAGGAAATGCCTTCCTGCCCTCTCCTCATCCCATCCCTGGGCAGGGGACATGCAACTGTCTACAAGGTGCCAAGTACCAGGACAGGAAAGGAAAGACGCCAAAAATCCAGCGCTGCCCTCAGAGAAGGGCAACCACGCAGTCCCCATCTTGGCAAGGAAACACAATTTCCGAGGGAATGGTTTTGGCCTCCATTCTAAGTGCTGGACATGGGGTGGCCATAATCTGGAGCTGATGGCTCTTAAAGACCTGCATCCTCTTCCCTAGGTGTCCCTCGGGCACATTTAGCACAAAGATAAGCACAAAAGGTGCATCCAGCACTTT--GTTACTATTGGTGGCAGGTTTATGAATGGCAACCAAAGGCAGTGTACGGGTCAAGATTATCAACAGGGAAGAGATagcatttcctgaaggcttcctaggtgccaggcactgttccattcctttgcatgttttgattaatttaatatttaaaataattctaccaggaag--------------ctaccattattaccacaacttcacaaatgagaacaccgaggcttagaggggttgggttgcccaaggttacagaggaagaaaacaggggagctggatctgagccaaggcatcaactccaaggtAACCCCTCAGTCACTTCACTGTGTGTCCCCTGGTTACTGGGACATTC

TTGACAAACTCGGGGCAAGCCGGTGAGTCAGTGGGGGAGGACTTTCAGGAAGAGGTGGGTTCCCAGTTGGTGACAGAAGAGGAGGCTGCAAAGTGAAGGAGCAGGGGCTCCAGGTCTGGCGACAACCAGGGAAGGGACAGGGCAGGGATGGCTTGGACCACGAGAGGCACCTGAGTCAGGCAGTCACATACTTCCCACTGGGGTCTACCATGTGAGGCATGGTGTGGGATCCTGGGAAGGAGACCAAGCCTCATTTCAGTTTGCTTATGGCCAAAGACAGGACCTGTGTACCCGACAACCCCTGGGACCTTTACCAAAAAAAGAGCAAACACCATTCACTCACTCATGTTAGATAAACACTGAGTGAAGTCACTGGAGCCCAAGGACTGTGCGAGGTCAGCACTGCCAATACAAGAAGCTGCAGCCCTCCAGCTCGCctccctcaatggccactccgtgctccagccatgctggcttccttttaggtcctccacctccaggctgtagttcatgtgcttctttctggaatgttcttcccaacctacccactcaaccctcagactttaccataaatgtcatttcctcacgtctgccttccctgacctgagaccaagccaggCTTCCCATGACGAGCCTCACAGTACCCCATCTCCCCTGAACAGATGCAGTAATAACCTACATAACccggggccatgatctatggctttgaatcctggctctgtcactaggccaggtctctcagcccttctgtgcctcagtttcctcatctataaaatgagatgacggcagtgcctgctcatgaagtgtgagttaatgcactcaaatcaatggttgtgcacggtttatatgaatattagtgattaCAAAATATTATCAatagaccttgtcacaactgttattgaagaactaatcatctattgcttatttaggtctttctctcctgccagaatgtgcgctccaggtggagaggtatgttgccttatccgtgg

ctggatatatagagattcccacactgccttgcacacgagcactgctgggtaaatatttgttggctgcaggaaAACGTGAAGGAATAGGCCCTCCAATGGGAGGAAAAGCATGAGTTGTGAGAGCAGAGCCACCACAGGAAACCAGGAGGCTAAGTGGGGTGGAAGGGAGTGAGCTCTCGGACTCCCAGGAGTAAAAGCTTCCAAGTTGGGCTCTCACTTCAGCCCCTCCCACACAGGGAAGCCAGATGGGTTCCCCAGGACCGGGATTCCCCAAGGGGGCTGCTCCCAGAGGGTGTGTTGCTGGGATTGCCCAGGACAGGGATGGCCCTCTCATCAGGTGGGGGTGAGTGGCAGCACCCACCTGCTGAAGATGTCTCCAGAGACCTTCTGCAGGTACTGCAGGGCATCCGCCATCTGCTGGACGGCCTCCTCTCGCCGCAGGTCTGGCTGGATGAAGGGCACGGCATAGGTCTGACCTGCCAGGGAGTGCTGCATCCTCACAGGAGTCATGGTGCCTGTGGGTCGGAGCCGGAGCGTCAGAGCCACCCACGACCACCGGCACGCCCCCACCACAGGGCAGCGTGGTGTTGAGACAACACAGCCCTCATCCCAACTATGCACATAGCTTCAGCCTGCACAGATAGGGGAGTAGGGGACAGAGCATTTGCTGAGAGGCCAGGAGCGCATAGATGGGACTCTGCTGATGCCTGCTGAGTGAATGAGGGAAAGGGCAGGGCCCGGGACTGGGGAATCTGTAGGGTCAATGGAGGAGTTCAGAGAAGGTGCAACATTTCTGACCCCCTACAAGGTGCTTGCTACCTGCCAGGCACCCTTTCCATACCTTGTCTCAGTTCAGCTCCCCACCTTGGATAAACAAGAAACCTTGGTTGCAGAGGAAAAAAGAGGCTGGAAACAAAGGGGTAGAAATGGGGTAGCAGGGGAGATTGCCTGATCAACTGCCAAATGGTACACAGTTCTGGAAAAGCACA

AAAAATGTGCACACACGGGTTCTTCCCACTTTAACCCCTGAGGAATCTGAGGCCTGCTCCTGAAACAGACTGGGCAGTGGCTAGTGACTCTAGGTATAGGAGTATCCAGCCCTGCTCACCCAGGCTAGAGCTTAGGGGGACAAGAGGAAAGAGGTGCCTGTGGGGGTGGAGGACAGGAAGGAAAAACACTCCTGGAATTGCAAAGTGAGGGCAGAGTCTATTTATATTGGGTTTAATTAACTCCTCTCCCTGGTGCCACTAAAGCAGCAATCACACTGCAGACAGCACTGATTTGATTGGCAAGAGATGCACCAGGCAGAATATTAAGGGACCAGGCCCCTATAAATAGGCCTAATCACAGCCCCTCACTGGAAAATGGTAAGGAAGACATTAATCAGGCCTGGCACTGTGCCCTAGACCTGCTCCCCTAGGCACTACAGTGGGGCCCTTGGTTGCAACACAAGTAGGTAGGGATGGATGAGTGTGGCATGAAGGGCCTAGGAGATTTCACTTGGGTTTAAAATGCTGTGACCTTGAGTAAGTTGCCGTCTCTGAATCTGATCCTTTCGATTTCCCATTCTCCAAACTGAGAACTAGCACTGCTGAGACGTGGTTATTTCCAATAATAATTTGTATATTTTACATAACGCACCACACCAACATCTTCACCCAGTTGGAGCCTACTCCTTTGCTCCCGCTGCTGGCTTCCCCAGCCCTCCCTTCTGCCCTCCTCAGGCCAGCACTTTTCAGTGAGTTCCTCCTTTGCATACAGGCTTTCCAGATCTGTACTTGCCTTGAATACTCATCAGAGCCCAGGAGTTACTCCTCACCTCCCACTTATTTTTCCTCCCATCAAATAACTAAAGCATGGCCAGCTGATGCCCAGCCAACTGAGAAACCCAACCCTCTGAGACCAGCACACCCCTTTCAAGCATGTTCCTCCCTCCCCTTCTTTGTATTTATACTGATGCAAGTTTGCTGGCTGTcct

aacttatttctgtgcctcagttctcccatatgtaagatcacaaagggggtaaagaTGCAAGATATTTCCTGTGCACATCTTCAGATGAATTTCTTGTTAGTGTGTGTGTGTTTGCTCACACATATGCGTGAAAGAAGAGTACATACACAGATCTCCTCAAAAAGGAGGCAGCAAGCCCGTTCAAGAATGGGACTGAATACACCTGATGAGTGGTTTACTTTCTGTCTGCAAACATCTACTGATCATCTGTTAGGTGCAGGCCATGATCACAACAAAGACGAATAAGACACTACACTAGCCAGGGAGAGTCTCAAAAACAACTAAACTCAAATTAAATTCATTCTACTCCAGTCATGGGTACAAAGCTAAGGAGTGACAAATCCCTCTTGGAGTTAGGGGAGTCAGGAAAAAGCTCTTAGCAGAATGTGTGCCTCTCggccgggcgcagcggctcacgcctgtaatcccagcactttgggaggcgaaggcaggcagatcacctgaggtcgggagttcgagaccagtctgaccaacatggtgaaactccatctctactaaaaatacaaaattagccaggcgtggtggtgcatgcctgtaatccccgctactcgggaggctgaggaaggagaatcacttgaaccaggaaggtggaggttgcagtgtgccaagatcgcgccatggcactccagcctaggcaacgagggtgaaCCAGGTCCAGGAAGAAGGTGCAAAGACAGCATTCCAGGTAAAAGAAACAGCTTGAACAAAAAGTGTGTAGGGGAACCGCAAGCGGTCTTGAGTGCTGAGGGTACAATCATCCTTGGGGAAGTACTAGAAGAAAGAATGATAAACAGAGGCCAGTTTGTTAAAAACACTCAAAATTAAAGCTAGGAGTTTGGACTTGTGGCAGGAATgaaatccttagacctgtgctgtccaatatggtagccaccaggcacatgcagccactgagcacttgaaatgtggat

agtctgaattgagatgtgccataagtgtaaaatatgcaccaaatttcaaaggctagaaaaaaagaatgtaaaatatcttattattttatattgattacgtgctaaaataaccatatttgggatatactggattttaaaaatatatcactaatttcatctgtttctttttacttttAGAAATCACATATGTGACTTAAATATTTCTTTTCTTTTTCTTTCCTCTCACTCAGCGTCCTGTGATTCCAAAGAAATGAGTCTCTGCTGTTTTTGGGCAGCAGATATCCTAGAATGGACTCTGACCTAAGCATCAAAATTAATCATCATAACGTTATCATTTTATGGCCCCTTCTTCCTATATCTGGTAGCTTTTAAATGATGACCATGTAGATAATCTTTATTGTCCCTCTTTCAGCAGACGGTATTTTCTTATGCTACAGTATGACTGCTAATAATACCTACACATGTTAGAACCATTCTGACTCCTCAAGAatctcatttaactcttattatcagtgaatttatcatcatcccctattttacataaggaaatggggttagaaagaccaaataacattttttcaacatcaaaacactagcttgagatcaagcccagacttggatctgtcgtctgaattccaagctttttgttatttattgatatgttttgttgtTTTCATGCAATAATGCAAATCTTAGCCCAAACATTTTGTTAGTAGTACCAACTGTAAGTCACCTTATCTTCATACTTTGTCTTTATGTAAACCTAAATTAGATCTGTTTTTGATACTGAGGGAAAAACAAGGGAATctaacactaaccagcccgtagtgtgtggtcaacactttcgttactttagtatacatcaccccaattgtttgtcttcaccacacactttggagttaggtagtagtatctatttttacaaataagaaaacccaggcacaaaggggttgattagcAATTATCTTTTGAAAAGCCTGTAGTTGCTC

ATCTGAAGAAGTGACGGACCACCTCTTATTTAGTGGACAGACAGTAACTAGTTGAGAAGACAGGGGATTTTGTTGGCGGAAAAAAAAATTTATCAAAAGTCGTCTTCTATCAGGGAGTTTTATGAGAAACCCTAGCTCCTCAGTTCCACAGTGGGTAACTGTAATTCATTCTAGGTCTGCGATATTTCCTGCCTATCCATTTTGTTAACTCTTCAATGCATTCCACAAATACCTAAGTATTCTTTAATAATGGTGGTTTTTTTTTTTTTTTGCATCTATGAAGTTTTTTCAAATTCTTTTTAAGTGACAAAACTTGTACATGTGTATCGCTCAATATTTCTAGTCGACAGCACTGCTTTCGAGAATGTAAACCGTGCACTCCCAGGAAAATGCAGACACAGCACGCCTCTTTGGGACCGCGGTTTATACTTTCGAAGTGCTCGGAGCCCTTCCTCCAGACCGTTCTCCCACACCCCGCTCCAGGGTCTCTCCCGGAGTTACAAGCCTCGCTGTAGGCCCCGGGAACCCAACGCGGTGTCAGAGAAGTGGGGTCCCCTACGAGGGACCAGGAGCTCCGGGCGGGCAGCAGCTGCGGAAGAGCCGCGCGAGGCTTCCCAGAACCCGGCAGGGGCGGGAAGACGCAGGAGTGGGGAGGCGGAACCGGGACCCCGCAGAGCCCGGGTCCCTGCGCCCCACAAGCCTTGGCTTCCCTGCTAGGGCCGGGCAAGGCCGGGTGCAGGGCGCGGCTCCAGGGAGGAAGCTCCGGGGCGAGCCCAAGACGCCTCCCGGGCGGTCGGGGCCCAGCGGCGGCGTTCGCAGTGGAGCCGGGCACCGGGCAGCGGCCGCGGAACACCAGCTTGGCGCAGGCTTCTCGGTCAGGAACGGTCCCGGGCCTCCCGCCCGCCTCCCTCCAGCCCCTCCGGGTCCCCTACTTCGCCCCGCCAGGCCCCCACGACCCTACTTCCCGCGGCCCCGGACGCCTCCTCACC

TGCGAGCCGCCCTCCCGGAAGCTCCCGCCGCCGCTTCCGCTCTGCCGGAGCCGCTGGGTCCTAGCCCCGCCGCCCCCAGTCCGCCCGCGCCTCCGGGTCCTAACGCCGCCGCTCGCCCTCCACTGCGCCCTCCCCGAGCGCGGCTCCAGGACCCCGTCGACCCGGAGCGCTGTCCTGTCGGGCCGAGTCGCGGGCCTGGGCACGGAACTCACGCTCACTCCGAGCTCCCGACGTGCACACGGCTCCCATGCGTTGTCTTCCGAGCGTCAGGCCGCCCCTACCCGTGCTTTCTGCTCTGCAGACCCTCTTCCTAGACCTCCGTCCTTTGTCCCATCGCTGCCTTCCCCTCAAGCTCAGGGCCAAGCTGTCCGCCAACCTCGGCTCCTCCGGGCAGCCCTCGCCCGGGGTGCGCCCCGGGGCAGGACCCCCAGCCCACGCCCAGGGCCCGCCCCTGCCCTCCAGCCCTACGCCTTGACCCGCTTTCCTGCGTCTCTCAGCCTACCTGACCTTGTCTTTACCTCTGTGGGCAGCTCCCTTGTGATCTGCTTAGTTCCCACCCCCCTTTAAGAATTCAATAGAGaagccagacgcaaaactacagatatcgtatgagtccagttttgtgaagtgcctagaatagtcaaaattcacagagacagaagcagtggtcgccaggaatggggaagcaaggcggagttgggcagct

+s panTro2.chr15 23958 8553 - 100063422
CCTGCCCTGCTTAAAATCCAATCACAGCTCCCTAACACTCCTGAATCAACTTGAAGTCCTGTCTTGAGTAATCCGTGGGCCCTAACTCACTCACCCCAACTCTTCACTCACTGCCTTGCCCCACACCCTGCCAGGGAGCCTCCCGTGGCACCGTGGGGACACAAAGGAACCAGGGCAAAGCTCCCTCAGCCCCATTCAAAGAGGCCTGGCCCACAGGCTCACGGAAAGTCAGCCTCTCATGCCCCGAGAGATGAGTGCAAGGGAGAGGCAGCGCTGTCTGTGCTTCCCATGCAGAAGCACCCTCCTCCCACCCCTGTGCAGGCCGGCCTTCATGGCAGACCACCATACACCACGTTCCAAGCCACACTGAGGCCTCTCTCCAAGCCCGCGGCCCCCATTTCCAGACCCCACCAGGGCAACCTGCATATCCACCTCCCTACCCTGCCCCCCTCTTCCAGGAGTCTGCCCTATGTGGAGTAAGCACgtggttttcctcttcagcaactatttcctttttactcaagcaatggccccatttcccttggggaatccatctctctcgcaggcttagtcccagagcttcaggtggggctgcccacagagttcctcagtctaagccaagtggtgtgtcatagtcccctggccccagtaatggattctgggatagacatgaggaccaagccaggtgggatgggtaagtgtggcttctggaggaagtggggacacaggagagcattctttcctgctggACCTGACCCTGTGTCATGTCACCTTGCTACCACGACAGCATGGCCTGTCTGGGAATGCAGCCAGACCCAAAGAAGCAAACTGACATGGAAGGAAAGCAAAACCAGGCCCTGAGGACATCATTTTAGCCCTTACTCCGAAGGCTGCTCTACTGATTGTTTAATTTTTGCTTAGCTTGGTTTGGGGAGTTCTGACAGGCGTGC

CACCAATTCTTACCGATTTCTCTCCACTCTAGACCCTGAGAAGCCCACGCGGTTCATGCTAGCAATTAACAATCAATCTCGCCCTATGTGTTCCCATTCCAGCCTCTAGGACACAGTGTCAGCCACATAATTGGTATCTCTTAAGGTCCAGCACGAGGTGGAGCACATGGTGGAGAGACAGATGCAGTGACCTGGAACCCAGGAGTGAGGGAGCCAGGACTCAGGCCCAAGGCTCCTGAGAGGCATCCGGCCCTCCCTGGGCTGTGCCAGCAGCTTGGAGAACCCACACTCAATGAACGCAGCACTCCACTACCCAGGAAATGCCTTCCTGCCCTCTCCTCATCCCATCCCTGGGCAGGGGACATGCAACTGTCTACAAGGTGCCAAGTACCAGGACAGGAAAGGAAAGATGCCAAAAATCCAGGGCTGCCCTCAGAGAAGGGCAACCATGCAGTCCCCATCTTGGCAAGGAAACACAATTTCCGAGGGAATGGTTTTGGCCTCCATTCTAAGTGCTGGACATGGGGTGGCCACAATCTGGAGCTGATGGCTCTTAAAGACCTGCGTCCTCTTCCCTAGGCGTCCCTTGGGCACATCTAGCACAACGATAAGCACAAAAGGTGCATCCAGCACTTTCTGTTACTATTGGTGGCAGGTTCATGAATGGCAACCAAAGGCAGTGTACGGGTCAAGATCATCAACGGGGAAGAGATagcatttcctgaaggcttcctaggtgccaggcactgttccattcctttgcatgttttgattaatttaatatttacaataattctaccaggaagaattattaccattattaccattattaccacaacttcacaaatgagaacactgaggcttagaggggttgggttgtccaaggttacagaggaagaaaacaggggagctggatctgagccaaggcatcaactccaaggtAACCCCTCAGTCACTTCAGTGCGTGTGCCCTGGTTACTGGGACATTC

TTGACAAGCTTGGGGCAAGCCGGTGAGTCAGTGGGGGAGGACTTTCAGGAAGAGGTGGGTTCCCAGTTGGTGACAGAAGAGGAGGCTGCAAAGTGAAGGAGCAGGGGCTCCAGGTCTGGCGACAACCAGGGAAGGGACAGGGCAGGGATGGCTTGGACCACGAGAGGCACCCGAGTCAGGCAGTCACATACTTCCCGCTGGGGTCTACCATGTGAGGCATGGTGTGGGATCCTGGGAAGGAGACCAAGCCTCATTTCAGTTTGCTTATGGCCAAAGACAGGACCTGTGTACCCGACAACCCCTGGGACCTTTGCCAAAAAAACAGCAAACACCATTCACTCACTCATGTTAGATAAACACTGAGTGAAGACACTGGAGCCCAAGGACTGTGCGAGGTCAGCGCTGCCAATACAAGAAGCTGCACCCCTCCAGCTCGCctccctcaatggccactctgtgctccagccatgctggcttccttttaggtcctccacctccaggctgtagttcatgtgcttctttctggaatgttcttcccaacctacccactcaaccctcagactttaccataaatgtcatttcctcacatctgccttccctgacctgagaccaagccaggcttcccatgacgagcctcacagtacccCATCTCCGCTGAACAGATGCAGTAATAACCTACATAACccggggccatgatctatggctttgaatcctggctctgtcacttggccaggtctctcagcctttctgtgcctcagtttcctcatctataaaatgagatgacggcagtgcctgctcatgaagtgtgagTTAATGCACTCAAATCAATGGTGGTGCACGGTTTATATGAATATTAGTGATTACAAAATATTATCAATAGACCTTGTCACAACTGTTATTGAAGAATTAATCATGTAttggttatttaggtctctctctcctgccagaatgtgcgctcca--tggagaggtatgttgccttatccgtgg

ctggatatatagagattcccacactgccttgcacaccagcactgctgggtaaatatttgctggctgcaggaaAACGTGAAGGAATAGGCCCTCCAGTGGGAGGAAAAGCACGAGTTGTGAGAGCAGAGCCACCACAGGAAACCAGGAGGCTAAGTGGGGTGGAAGGGACTGAGCTCTCGGACTCCCAGGAGTAAAAGCTTCCAAGTTGGGCTCTCACTTCAGCCCCTCCCACACAGGGAAGCCAGATGGGTTCCCCAGGACCAGGATTCCCCAAGGGGGCTGCTCCCAGAGGGTGTGTTGCTGGGATATCCCAGGACAGGGATGGCCCTCTCATCAGGTGGGGGTGGGTGGCAGCACCCACCTGCCGAAGATGTCTCCAGAGACCTTCTGCAGGTACTGCAGGGCATCCGCCATCTGCTGGACGGCCTCCTCTCGCCGCAGGTCTGGCTGGATGAGGGGCACGGCATAGGTCTGACCTGCCAGGGAGTGCTGCATCCTCACAGGAGTCATGGTGCCTGTGGGTGGGAGCCGGAGCATCAGAGCCACCCACGACCACCTGCACCCACCCACCACAGGGCAGCGTGGTGTTGAGACAACACAGCCCTCATCCCAACTATGCACATAGCTTCAGCCTGCACAGATAGGGGAGTAGGGGACAGAGCATTTGGTGAGAGGCCAGGAGCGCATAGATGGGACTCTGCTGATGCCTGCTGAGTGAATGAGGTAAAGGGCAGGACCAGGGACTGGGGAATCTGTAGGGTCAATGGAGGAGTTCAGAGAAGGTGCAACATTTCTGACCCCCTACAAGTTGCTTGCTACCTGCCAGGTACCCTTTCCATACATTGTCTCAGTTCAGCTCCCTACCTTGGATAAACAAGAAACCTTGGTTGCGGAGGAAAAAAGAGGCTGGAAACAAAGGGGTAGAAATGGGGTAGTGGGGGAGATTGCCTGATCAACTGCCAAATGGTACCCAGTTCTGGAAAAGCACA

AAAAATGTGCACACACGGGTTCTTCCCACTTTAACCCCTGAGGAATTTGAGGCCTGCTCCTGAAACAGACTGGGCAGTGGCTAGTGACTCTAGGTATAGGAGTATCCAGCCCTGCTCACCCAGGCTAGAGCTTAGGGGGCCAAGAGGAAAGAGGTGCCTGTGGGGGTGGAGGACAGGAAGGAAAAACACTCCTGGAATTGCAAAGTGAGGGCAGAGTCTATTTATATTGGGTTTAATTAACTCCTCTCCCTGGTGCCACTAAAGCAGCAATCACACTGCAGACAGCACTGATTTGATTGGCAAGAGATGCACCAGGCAGAATATTAAGGGACCAGGCCCCTATAAATAGGCCTAATCACAGCCCCTCGCTGGAAAATGCTAAGGAAGACATTAATCAGGCCTGGCACTGTGCCCTAGACCTGCTCCCCTAGGCACTACAGTGGGGCCCTTGGTTGCAACACAAGTAGGTAAGGATGGATGAGTCTGGTATGAAGGGCCTAGGAGATTTCATTTGGGTTTAAAATGCTGTGACCCTGAGTAAGTTGCTGTCTCTGAATCTGATCCTTTCCATTTCCCATTCTCCAAACTGAGAACTAGCACTGCTGAGACGTGGTTATTCCCAATAATAATTTGTATATTTTACATAACGTACCACACCAACATCTTCACCCAGCTGGAGCCTACTCCTTTGCTCCCCCTGCTGGCTTCCCCAGCCCTCCCTTCTGCCCTCCTCAGGCCAGCACTTTTCAGTGAGTTCCTCCTTTGCATACAGGCTTTCCAGATCTGTACTTGCCTTGAATACTCATCAGAGCCCAGGAGTTACTCCTCACCTCCCACTTATTTTTCCTCCCATCAAATAACTAAAGCATGGCCAGCTGATGCCCAGCCAACTGAGAAACCTAACCCTCTGAGACCACCACACCCCTTTCAAGCATGTTCCTCCCTCCCCTTCTTTGTATTTATACTGACGCAAGTTTGCTGGCTGTcct

aacttatttctgtgcctcagttctcccatatgtaagatcacaaagggggtaaagatgcaagATATTTCCTGTGCACATCTTCAGATGAATTTCT------TGTGTGTGTGTTTGCTCACACATATGCGTGAAAGAAGAGTACATACACAAAT---CTCAAAAAGGAGGCAGCAAGCCCGTTCAAGAATGGGACTGAATACACCTGATGAGTGGTTTACTTTCTGTCTGCAAACATCTACTGATCATCTGTTAGGTGCAGGCCATGATCACAACAAAGACGAATAAGACACTACACTAGCCAGGGAGAGTCTCAAAAACAACTAAACTCAAATTAAATTCATTCTAATCCAGTCATGAGTACAAAGCTAAGGAGTGACAAATCCCTTTTGGAGTTAGGGGAGTCAGGAAAAAGCTCTTAGCAGAATGTGTGCCTCTCggctgggcacagcggctcacgcctgtaatcccagcactttgggaggcgaaggcaggcagatcacctgaggtcaggagttcgagaccagtctgaccaacatggtgaaactccatctctactaaaaatacaaaattagccaggcgtggtggtgcatgcctgtaatcccagctactcgggaggctgaggaaggagaatcacttgaaccggggaggtcgaggttgcagtgtgccgagatcgcgccattgcactccagcctgggcaacaaaagtgaaCCAGGTCCAGGAAGAAGGTGCAAAGACAGCATTCCAGGTAAAAGAAACAGCTTGAACAAAAAGTGTGTAGGGGAACAGCAAGCGGTCTTGAGTGCTGAGGGTACAATCATCCTTGGGGAAGTACTAGAAGAAAGAATGATAAACAGAGGCCAGTTTGTTAAAAACACTCAAAATTAAAGCTAGGAGTTTGGACTTGTGGCAGGAATgaaatccttagacctgtgctgtccaatatggtagccaccaggcacatgcagccactgagcacttgatatgtggat

agtctgaattgagatgtgccataagtgtaaactatgcaccaaatttcaaagactagaaaaaaagaatgtaaaatata-----attttatattgattacatgctaaaataaccatatttgggatatactggattttaaaaatatattgctaatttcatctgtttctttttacttttAGAAATCACATATGTGACTTAAATATTTCTTTTCTTTTTCTTTCCTCTCACTCAGCGTCCTGTGATTCCAAAGAAATGAGTCTCTGCTCTTTTTGGGCAGGAGATATCCTAGAATGGACTCTGACCTAAGAATCAAAATTAATAATCATAACGTTATCATTTTATGGCCCCTTCTTCCTATATCTGGTAGCTTTTAAATGATGACCATGTAGATAATCTTTATTATCCCTCTTTCAGCAGACGGTATTTTCTTATGCTACAGTATGACTGCTAATAATACCTACATACGTTAGAACCATTCTGACTCCTCAAGAatctcatttaactcttattatcagtgaatttatcatcatccccaattttagataaggaaatggggttagaaagaccaaataacattttttcaacatcaaaacactagcttgagatcaagcccaaacttggatctgttgtctgaattccaagctttttg----ttattgatatgttttgttgtTTTCATGCAATAATGCAAATCTTAGCCCAAACATTTTGTTAGTAGTACCAACTGTAAGTCACCTTATCTTGATACTTTGTCTTTATGTAAACCTAAATTAGATCTGTTTTTGATACTGAGGGAAAAACAAGGGAATCTAACACTAACCagcccgtagtgtgtggtcaacactttcgttactttagtatacatcaccccaattgtttgtcttcaccacacactttggagttaggtagtactatctatttttacaaataagaaaacccaggcacaaaggggttgattagcAATTATCTTTTGAAAAGCCTGTAG-TGCTC

ATCTGAAGAAGTGACGGACCATCTCTTATTTAGTGGACAGACAATAACTAGTTGAGAAGACAGGGGATTTTGTTGGCGGAAAAAAAAATTTATCAAAAGTCGTCTTCTATC--GGAGTTTTATGAGAAACCCTAGCTCCTCAGTTCCACAGTGGGTAACTGCAATTCATTCTAGGTCTGCGATATTTCCAGCCTATCCATTTCGTTAACTCTTCAATGCATTCCATAAATGCCTAAGTATTCTTTAATAATGGTGG--TTTTTTTTTTTTTGCATCTATGAAGTTTTTTCAAATTCTTTTTAAGTGACAAAACTTGTACATGTGTATCGCACAATATTTCTAGTCGACAGCACTGCTTTCGAGAATGTAAACCGTGCACTCCCAGGAACATGCAGACACAGCGCGCCTCTTTGGGACCACGGTTCATAATTTGGGAGTGCTCGGAGCCCTTCCTCCAGACCGTTCTCCCACACCCCGCTCCAGGGTCTCTCCCGGAGTTACAGGCCTCGCTGTAGGTCCCGGGAACCCAACGCGGTGTCAGAGAAGTGGGGTCCCCTACGAGGGACCAGGAGCTCCGGGCGGGCAGCAGCTGCGGAAGAGCCGCGCGAGGCTTCCCAGAACCCGGCCGGGGCGGGAAGACGCAGGAGTGGGGAGGCGGAACCGGGACCCCGCAGAGCCCGGGTCCCTGCGCCCCACAAGCCTTGGCTTCCCTGCTAGGGCCGGGCAAGGCCGGGTGCAGGGCGCGGCTCCAGGGAGGAAGCTCCGGGGCGAGCCCAAGACGCCTCCCGGGCGATCGGGGCCCAGCGGCGGCGTTCGCAGTGGAGCCGGGCACCGGGCAGCGGCCGCGGAACACCAGCTTGGCGCAGGCTTCTCGGTCAGGAACGGTCCCGGGCCTCCCGCCCGCCTCCCTCCAGCCCCTCCGGGTCCCCTACTTCGCCCCGCCAGGCCCCCACGACCCTACTTCCCGCGGCCCCGGACGCCTCCTCACC

TGCGAGCCGCCCTCCCGGAAGCTCCCGCCGCCGCTTCCGCTCTGCCGGAGCCGCTGGGTCCTAGCCCCGCCGCTCACAGTCCGCCCGCGCCTCCGGGTCCTAACGCCGCCGTTCACCCTCCGCTGCGCCCTCCCCGAGCGCGGCTCCAGGACCCCGTCGACCCGGAGCGCTGTCCTGGCGGGCCGAGTCGCGGGCCTGGGCACGGAACTCACGCTCACTCCGAGCTCCCGACGTGCACACGGCTCCCATCCGTTGTCTTCCGAGCGCAGGGCCTCCCCTACCCGTGCTTTCTGCTCTGCAGACCCTCTTCCCAGACCTCCGTCCTTTGTCCCATCGCTGCCTTCCCCTCAAGCTCAGGGCCAAGCTGTCCGCCAGCCTCGGCTCCTCCGGGCAGTCCTCGCCCTGGGTGCGCCCCGGGGCAGGACCCCCAGCCCAGGCCCAGGGCCCGCCCCTGCCCTCCAGCCCTACACCTTGACCCGCTTTCCTGCCTCTCTCAGCCTACCTGACCTTGTCTTTACCTCTGTGGGCAGCTCCCTTGTGATCTGCTTAGTTCCCA-CACCCTTTAAGAATTAAATAGAGaagccagacgcaaaactacagatatcgtatgagtccacttttgtgaagtgcctagaatagtcaaaattcacagagacagaagcagtggtcgccaggaatggggaagcaaggcggagatgggcagct

+
+a score=78125
+s hg18.chr1        19890 845 + 247249719
cgtgttcaatgggtagagtttcaggctggggtgatggaagggtgctggaaatgagtggtagtgatggcggcacaacagtgtgaatctacttaatcccactgaactgtatgctgaaaaatggtttagacggtgaattttaggttatgtatgttttaccacaatttttaaaaaGCTAGTGAAAAGCTGGTAAAAAGAAAGAAAAGAGGCTTTTTTAAAAAGTTAAATATATAAAAAGAGCATCATCAGTCCAAAGTCCAGCAGTTGTCCCTCCTGGAATCCGTTGGCTTGCCTCCGGCATTTTTGGCCCTTGCCTTTtagggttgccagattaaaagacaggatgcccagctagtttgaattttagataaacaacgaataatttcgtagcataaatatgtcccaagcttagtttgggacatacttatgctaaaaaacattattggttgtttatctgagattcagaattaagcattttatattttatttgctgcctctggccaccctaCTCTCTTCCTAACACTCTCTCCCTCTCCCAGTTTTGTCCGCCTTCCCTGCCTCCTCTTCTGGGGGAGTTAGATCGAGTTGTAACAAGAACATGCCACTGTCTCGCTGGCTGCAGCGTGTGGTCCCCTTACCAGAGGTAAAGAAGAGATGGATCTCCACTCAtgttgtagacagaatgtttatgtcctctccaaatgcttatgttgaaaccctaacccctaatgtgatggtatgtggagatgggcctttggtaggtaattacggttagatgaggtcatggggtggggccctcattatagatctggtaagaaaagagaGCATTGtctctgtgtctccctctc

+s panTro2.chrUn 57103829 845 -  58616431
tgtgttcaatgggtagagtttcaggctggggtgatggaagggtgctggaaatgagtggtagcgatggcggcgcaacagtgtgaatctacttaatcccactgaactgtatgcttaaaaatggtttagacggtgaattttaggttatgtatgttttaccacaatttttaaaaaGCTAGTGAAAAGCTGGTAAAAAGAAAGAAAAGAGGCTTTTTTAAAAAGTTAAATATATAAAAAGAGCATCATCAGTCCAAAGTCCAGCAGTTGTCCCTCCTGGAATCCGTTGGCTTGCCTCCGGCATTTTTGGCCCTTGCCTTTtagggttgccagattaaaatacaggatgcccagttagtttgaattttagataaacaacgaataatttcgtagcataaatatgtcccaagcttagtttgggacatacttatgctaaaaaacattattggttgtttatctgagattcaaaattaagcattttatattttatttgctgcctctggccaccctaCTCTCTTCCTGACACTCTCTCCCTCTCCCAGTTTTGTCCGCCTTCCTTGCCTCCTCTTCTGGGGGAGTTAGATCGAGTTGTAACAAGAACATGCCACTGTCTCACTGGCTGCAGCGTGTGGTCCCCTTACCAGAGGTAAGGAAGAGATGGATCTCCACTCAtgttgtagacagaatgtttatgtcctctccaaattcttatgttgaaaccctaacccctaatgtgatggtatgtggagatgggcctttggtaggtaattacggttagatgaggtcatggggtggggccctcattatagatctggtaagaaaagagagcattgtctctctgtctccctctc

+
+a score=1847
+s hg18.chr1              20735 23 + 247249719 tctctctctctctctctctcatt 
+s panTro2.chr15_random 1995870 23 -   3087076 tctctctctctctccctctcttt 
+
+a score=89580
+s hg18.chr1        20758 992 + 247249719
tctctctatctcatttctctctctctcgctatctcatttttctctctctctctttctctcctctgtcttttcccaccaagtgaggatgcgaagagaaggtggctgtctgcaaaccaggaagagagccctcaccgggaacccgtccagctgccaccttgaacttggacttccaagcctccagaactgtgagggataaatgtatgattttaaagtcgcccagtgtgtggtattttgttttgactaatacaaCCTGAAAACATTTTCCCCTCACTCCACCTGAGCAATATCTGAGTGGCTTAAGGTACTCAGGACACAACAAAGGAGAAATGTCCCATGCACAAGGTGCACCCATGCCTGGGTAAAGCAGCCTGGCACAGAGGGAAGCACACAGGCTCAGggatctgctattcattctttgtgtgaccctgggcaagccatgaatggagcttcagtcaccccatttgtaatgggatttaattgtgcttgccctgcctccttttgagggctgtagagaaaagatgtcaaagtattttgtaATCTggctgggcgtggtggctcatgcctgtaatcctagcactttggtaggctgacgcgagaggactgcttgagcccaagagtttgagatcagcctgggcaatattgtgagattccatctctacaaaaataaaataaaatagccagtcatggtgtcacacacctgtagtcccagctacatgggaggctgaggcgggaggatcacttgagcttgggagatcgaggctgcagtgagctatgattgtaccactgcactccaggctgggcgacagagagagaccctgtctcagaaaaaaaaaaaaaaGTACTTTGTAATCTGTAAGGTTTATTTCAACACACACAAAAAAAGTGTATATGCTCCACGATGCCTGTGAATATACACACACACCACATCATATACCAAGCCTGGCTGTG
 TCTTCTCACAAATGCACTGCTAGGCACCACCCCCAGTTCTAGAA 
+s panTro2.chrUn 57104674 981 -  58616431
tctctctatgtcatttctctctct----ctatctca--tttctctctctctctctctctcctctgtcttttcccaccaagtgaggatgcgaagagaaggtggctgtctgcaaaccaggaagagagccctcaccaggaacccgtccagctgccaccttgaacttggacttccaagcctccagaactgtgagggataaatgtatgattttaaagtcgcccagtgtgtggtattttgttttgactaatacaaCCTGAAAACATTTTCCCCTCACTCCACCTGAGGAATATCTGAGTGGCTTAATGTACTCAGGACACAACAA---AGAAATGTCCCATGCACAAGGTGCACCCATGCCtgggtaaagcagcctggcacagagggaagcacacaggctcagggctctgctattcattctttgtgtgaccctgggcaagccatgaatggagcttcagtcaccccatttgtaatgggatttaattgagcttgccctgcctccttctgagggctgtagagaaaagatgtcaaagtattttgtaatctggctgggcgtggtggctcatgcctgtaatcccagcactttggtaggctgacgcgagaggactgcttgagcccaagagtttgagatcagcctgggcaatattgtgagattccatctctacaaaaataaaataaaatagccagtcatggtgtcacacacctgtagtcccagctacatgggaggctgaggcgggaggatcacttgagcttgggagatcgaggctgcagtgagctatgattgtaccactgcactccaggctgggcgacagagagagaccctgtctcag--aaaaaagaaaaagtactttgtaatctgtaaggtttatttcaacacACACAAAAAAAGTGTATATGCTCCACGATGCCTGTGAATATACACACACACCACATCATATACCAAGCCTGGCTGTG
 TCTTCTCACAAATGCGCTGCTGGGCACCACCCCCAGTTCTAGAA 
+
+a score=178881
+s hg18.chr1        21750 2038 + 247249719
TCACACCAGCCAGTTCACCCTCCAGATGGTTCACCCTCAACTTCATAAAAGTTCCCTACCTAATCTACT---GACAGGCTCATCCCCGACCTAATTTTAAAGATTTCCTAGGA----------------------------------GCTGCAGTGGGAATCCTGGACCTCAGCCTGGACAAAGAACAGCTGCAGGTCATTCTCATGTGTGGACACAGAAGCTCTGCCTGCCTTTGCTGGCCAGCTGGGCTGAGCGGGCCTGGGAA-TTAAGGCTGCAGGGTTGGTCCCAGGCAGTCTTGCTGAAGCTTGCCACATCCCCCAGCCTCCTGGATTTGCCAGGATCCAAGAGCATGGACTTTAGGAATTCCTGGTGGAGGAGTGAAGAAAATGTGACAGGGTGTCCTAAGCCCCGATCTACAGGAAGAAAACTGGAAATAAGACTGAGGACTTAGTTTAAGATGTTCCTACTCAGCCTCTAGCTTTTGTGCTACAGTTCTGGGAACAGACTCCTCTCTCCTGAAAACCACTTCCCTCCGCAGCATTAGATTTCACCAAGATGTCTTGCTTGTGGGAAAGACTTCCAAGGATGCCTGGAGAGAGGAGGATGGAAATGTCCTGCTCTCTAAACAGATAGACAGATGCAGCCAGACAGAAAATAGTTTATCTTGCTGAGGTTTCTAATGTATTTGAAAGAGGCCTGGGTCTAGAAGTCTACCCAGAGGGCTCTGTGTTGTGCACGCAAAGATAAGAACCTTCCCTGTGGGAGTTCCAGAGCCAGTTTTCATAAACACCCATCGGTGACTGTGTTCAGAGTGAGTTCACACCATCCTGACCTGCCCTGAGTTAGACCTTACATGGTCTTCCTCCTCTAGGAAGCCTCTGCAGCCCAGGAACCTCCCCTTATCGGAAATGAACAGCATTTGAAGCTTCACCAGACAGACCAGAC

AGCTTAGCCCTCGTGTTGTGCCATGTGGGTTGTTCTCTGAGAGGcaggagagcatagtggttactaggaagggaaggactttgggactagactgcctcggctggagtcctctttctgcttcatagccacgtgatcctaggcatgttacctgtgcctcagttttcactctgtcaatatgtaataactgaatctgtctttgtggtgaggattcagtgagttaacatatttgaagtgcttaaaaATGAGGCTTGtgtccatagattaatgagtgaatacacaaatggtgatatggacatacagtggagtattagtcataaaaaggaaggcagagctgatccatggcaccatgtgacagaacctcaaaagcattaggttaagtggaagaagccagacacaggtcacctattgtgtaattccatttataggaaatatacagaatatgtaaatccgtggagaaagaaagccgatttccaggggctaaggggaggggagaatgggaagtggctgcttcatgggtacaaggtttcattttgagctgatgaaaatgttttggaactacatagagatagtgttggcacaacatggtgaatgtactgaatgccactgattgttcaatttaaaatggtcaaacttatatgaatttcacctccatt-aaaaaaaAAAAAAAAGgaccagatgtggttgctcacacccataatcccaacactttggaaAAAGGTGAAAGTTTTTTTTtctt------tttttttttatatacttaagttctagggtacatgtgcataatgtgcaggttggatacatagatatgcgtgtgccatgttggtttgctgcacccatcaacttgtcatttacattaggtatttcttctaatgctatccctcccccagccccccacccactgacaggccccagtgtatgatgttctctgccccatgtccaagcgttctcattgttcaattcccacctgtgagtgagaacatgcagtgtt

tggttttctgtctttgtgatagtttgctcagaatgatggtttccagcttcatccatgtccctgcaaaggacatgaactcatcctttttaatgg-ctgcatagtat-cccatggt-atatatgtgcc-acattctcttaatcc-agtctgtca

+s panTro2.chrUn 57107018 2082 -  58616431
CCAGACCAGACAGTTCACCCTCCAGACGGTTCACCCTCAACTGTATAAAAGTTCTCTACCTAATCTACTACTGACAGACTCATCTCAGACCTAATTTTAAAGATTTCCTAGGAACTGAATTGCAAAAACTTTTACCCTCACCCTAGAGCTGCAATGGGAATCCTG-ACCTCAGCGTAGACAAAGAAAAGCTGCAGGTCATTCTCATGTGTGGACACGGAAGCCCTGCCTGCCTTTGCTGGCCAGCTGGGCTGAGTGGGCCTGGGAAATTAAGGCTGCAGGGTTGGTCCCAGGCAGTCTTGCTGAAGCTTGCCACATCCCCCAGCCTCCTGGATTTGCCAGGATCCAAGAGCATGGACTTTAGGAATTCCTGGTGGAGGAGTGAAGAAAATGTGACAGGGTGTCCTAGGCCCCAATCTACAGGAAGAAAACTGGAAATAAGACTGAGGACTTAGTTTAAGATGTTCCTACTCAGCCTCTAGCTTTTGTGCTACAGTTCTGGGAACAGACTCCTCTCTCCTGAAAACCACTTCCCTCTGCAGCATTAAATTTCACCAAGATGTCTTGCTTGTGG-AAAGACTTCCAAGGATGCCTGGAGAGAGGAGGATGGAAATGTCCCGCTCTCTAAACAGATAGACAGATGCAGCCAGACAGAAAATAGTTTATCTTGCTGAGGTTTCTAAT----TTGAAAGAGGCCTGGGTCTAGAAGTCTACCCAGAGGGCTCTGTGTTGTGCAGGCAAAGATAAGAACCTTCCCTGTGGGAGTTCCAGAGCCAGTTTTCATAAACACCCATCGGTGACTGTGTTCAGAGTGAGTTCACACCATCCTGACCTGCCCTGAGTTAGACCTTACATGGTCTTCCTCCTCTAGGAAGCCTCTGCAGCCCAGGAACCTCCCCTTATCTGAAATGAACAGCATTTGAAGCTTCACCAGACAGACCAGAC

AGCTTAGCCCTCGTGTTGTGCCATGTGGGTTGTTCTCTGAGAGGcaggagagcatagtggttactaggaaggggaggactttgggactagactgcctcggctggagtcctctttctgcttcatagccacgtgatcctaggcatgttacctgtgcctcagttttcactctatcaatatgtaataactgaatctgtccttgtggtgaggattcagtgagttaacatatttgaagtgcttaaaaATGAGGCTTGtgtccatagattaatgagtgaatacacacatggtgatatggacatacagtggagtattagtcataaaaaggaaggcagagctgatccatggcaccatgtgactgaacctcaaaagcattaggttaagtggaagaagccagacacaggtcacctattgtgtaattccatttataggaaatatacagaatatgtaaatccgtggagaaagaaagccgatttccaggggctaaggggaggggagaatgggaagtggctgcttcatgggtacaaggtttcattttgaggtgatgaaaatgttttggaactacacagagatagtgttggcacaacatggtgaatgtactgaatgccactgattgttcactttaaaatggtcaaacttatgtgaatttcacctccattaaaaaaaAAAAAAAAAGgaccagatgtggttgctcacacccataatctcaacactttggaaAAAGGTGAAAGATTTTTTTTCTTTTtttctttttttttatatacttaagttctagggtacatgtgcataatgtgcaggttggatacatagatatgcgcgtgccatgttggtttgctgcacccatcaacttgccatttacattaggtatttctcctaatgctatccctcccccagccccccacccactgacaggccccagtgtgtgatgttctctgccccatgtccaagcgttctcactgttcaattcccacctgtgagtgaaaacatgcagtgtt

tggttttctgtctttgtgatagtttgctcagaaggatggtttccagcttcatccacgtccctgcaaaggacataaactcatcctttttaatgntcttcatagaatccccatggtaatatatgtgccaacattttcttaatccaagtctgtca

+
+a score=157011
+s hg18.chr1              23788 1709 + 247249719
ttgatggacatttgggttggttcaaagtctttgctattgtgaatactgccacaataaacatacatgtgcatgtgtctttatagtagcacgatttataatcctttgggtatatacccTAAGACctgggacgcatttaaagcagtgtgtaaagagacatttatagcactaaatgcccacaagagaCCTCTGCCTGAGAACGTGGGTTTCAGCCTAAGAGTTGTAATATGTGTGCCCATTCACAGGTGCTGCATCAGAGTCCCAGGTGGGAAGAAGGCAAGCATACACAAAAATGGTAAaaggcagaaaggagcccagtctcgttctttttaagaagttttcctaagaatctccacccagcgacttgctctcacatcttcttggccagcactggaccacacaactccttctagatacagaggagTCCTAGGATTCTATGAGAAAGAAGGGGAGGGTGGGCAAAGGGCAGCCAGCTGTGCAGCATCTGCTGGAGACACCTAACCCTTGGTGGAGGGGTTGTGGTGCTGGgagaaggctttctggacggtgtgacagcagagataaacttaaaggccaagtaggagttaccctggtgaagcagggcagggttacaagcattccagcaacatgaagcagcaGGAGtgttttaattaaaagaaggcagttgctgtaaccaactataaacaaataaaggcttaaacacaatggaagtttatttctcactaagggaacatccaaatccatgatactttaagtcagggacccaggttcctcccatctatggttctgccatcactaatctgggtcttccacaattgccgtgctccttggaggtgggaagagcaggcggaggacacgtgggaggttttagggacaagcctggaggcagcatgcgtcactcccatgcagagtccattggccaatgctggctccgatggccacat

ctcactgcaggggcagctgggaaatacagtctggctgtctacccaggaggaagagcagccagtttctgctgCTGATGATCAGGAGGTGGAGAAAATGTTCAGTCAGGCAGGGAGTGGGAATAGACAAGACCACAAGCAGCTTGGTGCCTCTGAAAGGGAGAGGGGTGGAGGGGAGACTAGAGAGGTGGGTAGGAATACTGGATTCCACTGACCACGTGCTGGATGTCACGCTTAGCCCTCCTGCTCTGTGCCGGGTTAGGCACCTGGTGTTTTACGTACATAATCTCAATTCTGTGAGGGCATCCGACCTGTGGGAAAAGAGCTGTTTGTTTCAAATGCCAGTCCTGCTTCCTAACAAGTGTTTAGAGCTTAATCGTGTTCAAAAtacatatacaatgtttaatacttacaagaatttggtggggaaaatattaccatctttcccttttgtgattggagaaaaatgaggctttgaagggtttaagaacttgcccaaggtcggccaggtgcagtggctcatgtctataatcccaacactttgggaggctgaggtgggaggatcgcttgaggccaggagttcaagaccagcctgagcaacatagtgagactttgtctctataaaaaataaataaataaataaaaaCAACTTGTCCAAGGTCAGACAGGCAGCCTCTTAGTAAGCACACATATCCTCTATATTATACTACCTCTCATGGAGGATCT-CCTGTGTTCTACAAATAGTCTGGACTTGAGCCAGAATGTGTTATA

+s panTro2.chr15_random 1999027 1707 -   3087076
ttgatggacatttgggttggttcaaagtctttgctattgtgaatagtaccacaataaacatacatgtgcatgtgtctttatagtagcacgatttataatcctttgggtatatacccTAAGACctgggacgcatttaaagcagtgtgtaaagagaaatttatagcactaaatgcccacaagagaCCTCTGCCTGAGAACGTGGGTTTCAGCCTAAGAGTTGTAATATGTGTGCCCATTCACAGGTGCTGCATCAGAGTCCCAGGTGGGAAGAAGGCAAGCATACACAAAAATGGTAAAAGGCAGAAAGGAGCCCAGTCTCATTCTTTCTAAGAAGTTTTCCTAAGAATCTCCACCCAGCGACTTGCTCTCACATCTTCTTGGCCAGCACTGGACCACACAACTCCTTCTAGATACACAGGAGTCCTAGGATTCTATGAGAAAGAAGGGGAGGGTGGGCAAAGGGCAGCCAGCTGTGCAGCATCTGCTGGAGACACCTAACCCTTGGTGGAGGGGTTGT-GTGCTGGgagaaggctttctggacggtgtgacagcagagataaacttaaaggccaagtaggagttaccctggtgaagcagggcagggttacaagcattccagcaacatgaagcagcaGGAGtgttttaattaaaagaaggcagttgctgtaaccaactataaacaaataaaggcttaaacacaatggaagtttatttctcactaagggaacatccaaatccatgatactttaagtcagggacccaggttcctcccatctatggttctgccatcactaatctgagtcttccacaattgccgtgctccttggaagtgggaagagcaggcggaggacacgtgggaggttttagggacaagcctggaggcagcatgcgtcactcccatgcagagtccattggccaatgctggctccaatggccacat

ctcactgcaggggcagctgggaaatacagtctggctgtctacccaggaggaagagcagccagtttctgctgCTGATGATCAGGAGGTGGAGAAAATGTTCAGTCAGGCAGGGAGTGGGAATAGACAAGACCACAAGCAGCTTGGTGCCTCTGAAAGGGAGAGGGGTGGAGGGGAGACTAGAGAGGTGGGTAGGAATACTGGATTCCACTGACCACGTGCTGGATGTCACACTTAGCCCTCCTGCTCTGTGCCGGGTTAGGCACCTGGTGTTTTGCGTACATAATCTCAATTCTGTGAGGGCATCCGACCTGTGGGAAAAGAGCTGTTTGTTTCAAATGCTACTCCTGCTTCCTAACAAGTGTTTAGAGCTTAATCATGTTCAacatacatatacaatatttaatacttacaagaatttggcggggaaaatattaccatctttcccttttatgattggagaaaaatgaggctttgaagggtttaagaacttgcccaaggtcggccaggtgcagtggctcatgtctataatcccaacactttgggaggctaaggtgggaggatcgcttgaggccaggagttcaagaccagcctgagcaacatagtgagactttgtctctataaaaaataaataaatAAATAAAAAGAACTTGTCCAAGGTCAGACAGGCAGCCTCTTAATAAGCGCACATATCCTCTATA-TATACTACCTCTCGTGGAGGATCTCCCTGTG-TCTACAAATAGTCTGTACTTGAGCCAGAATGTGTTATA

+
+a score=465064
+s hg18.chr1      25497 5098 + 247249719
ATCCTGGGATCACGGCCAGTGGGCTTAGAAGAAGCCATCTCTTTCTCATGCCAAGATGAGGCTCCCCCAGATTTGCTCAGACTTACCTATAGTCAGCAGCATCGGGGGTCAGGAAAGACTTCACGAAGCCATAAATGCATCCTTCTCGGGGCAGCACCTGGCTCTCCCAGGTGAGAGAGGACTCCATTTTCACAGGCAGGCGTGGGAGCTTCAGCACCCATCTCTGGGCCCAGAATGACCCACTGGAGACCTTACAGCTCTCCTGTCACCCCCAATTCCTGCCCCCTCTGCAGCCTTGGAGGAGAATGGAGCTGAAGGGCCTGCCCTCTGTAGGGTGAGAAAGGGAGGCTAAAGCCTGGTGCCCACTGCCCTGGCTGCTCCGCATTGCAGGAGCTGCGCCCTTCCTTTCCTGGCACAGGGTCCACAGCCCCGAAACCCCGTTGTGTGGGAGCTGGGCACAGGGCAGCAGGACTAATCCTTGGAACAGCTCAGGGAGGATTATCCCAGCCACTGTCAGCAGCGGTGCAGCTGGCTCATTCCCATATAGGGGGAGGCCAGAGCCAGGGGCCTGCCACAAGTTGGA--AGGCTGGGGAAGGGGAGGCCAGCAGAGGTGTCCTGGCTGTGGGTGGCTCTGAGGGGGCTCTCAGGGGTGGGGCTAAATCTCAGGGGCAGGATTATGTAAATCAAACCAATTCTAGCCACAGATTTAAAGTTTGG---AAAAAAAAAAAAACCCAGCCTGGCGGAAAGAATTTAAATTATAAAAACTTAGAAGTATGGAATGTGAAATCATCCTGTAGGTGCTTATTTAACAACGAAATCATCCCGACACAATGAGCCATATGTGAAAAGTCATCCTTCCCCAACACATCCCCCAACAGGCACTCCTCAAGCCTCTCCCACCCAAGTGCTGGCATCCTCCCTGTCCTGCTTCACCTGAGACACCC

CTTGTCTCATTAGACATGCAACTACGGGAGGGGTGACAGGAAGACAAGACACTATTTCCTCAGGCCCAGTTTGGTGTGGGGAGAAAGCCTCCTGATCCTGAAAGCAAGAATTTGACCAGAGCAGAAGTAATCAGTATGCAGATTGATTCTGTGGTATGTTAATGTTTATGCATAGATTATGAGGACCAGGTGAAAAGTGGGCCAGGGGAGCCAGATGTGTGTGTGAGTCATGGGTGGCTGAGATGAGGACAGGAGGGAAACTGGTTTGGAGGGTGCTGGCGATGGGGTGGGGGTGCCAGGAGGAAGGGAGGCTAGTTGTTTGAATGTCTGCATGAAAAAGCGGACGACAGCGGGGTCTGGGTGAATTCGGGCAACCATTTGGACCGTGGAGAAAACTGCCTGCGTGCGGCTGAGGACCTGCACTATTAATTTGTTTTTTAGCTAAGGCAAAGATAAATATAAAAACtgatactccacccagttaccagaaaacatttaggtatgtgtgagacaacttgggtatgtgaacctaccttttcaatgtaaattcagtgaaatctaagtgcagatcccatatttccaataaaaaggtaacatccaaactcagatgtcctatgagtataaaatacacaaagatcttctggacttagtatgaaaagggattttttttttgtcaggtacctcactagttatttttaaaataggattgcatgttgaaatgataatcttttggatatattgggttaaataaatttattattaaagttaatttcacttaaaaatgtttaatgtagctactagaaattttaaaattaagcatgttgctcaccttatgtttctattggacggctctCTCTAGATACAAAGGCTGCCAAGAGGGACCTCACTCTAGCTTCAGGGAGAAGAGAGGAATTAGCAAGGCCAAGCAGAGGCTCCTGAGGGCAGGGCCAAGGGCGGCTTGGTGGGGTGGGGATGGGATGCACAGAGAT

AACTCCAACCCTTAAGAAGGTGTTTCCTAGAGCAGGCTGTGACCTGTCAGTTTATATACTGAGGCTTAGGAGCCTCTTGGATGCCCCCAGATCTGCACCCCTGAATTGCCCTGTGCCCCTGCCGTCTTTGTTCCTGTGCTGGCATAGTGGTCTCACCTCCGGCAGtatcaccaccactgggcacaagcttctccagcacagcaactgtgtcttatttctccttgtactcccagtgttcacaccatgctgcactcacagaagactcttcgttgatattttgtggacagagagaatGCCTGTGAGAGTGGGCTGAAGTGTGCGTTGGGCTCCAGAGACCTTAAGGAGGGGAGACCAGGTCCTGAGTAAAGTTGAAGGGGAGGGGCTGAGTCCTGCTAGCCAGGAGTCTCATCCCCTGGGGAAGTTCCAGGGACCCCTCAGAAGTGCAAGGGGACGGTGTTAGTGTTAGTCCAGTAACACAGCCCAGAGCCTGCcttccacgtgggtttgacaggagcctcctaactgctcttctgcttccatttttgccccttcagtctattctcaacagggaagccagaggcatccttaaccatgtcagatcatgtggctcctcagctcaaagccTCATCTCAGAGGAAAGCTCTGGTCCCTTAGAAATGGCCCAAGTGGTGACAGACAGACTCTAAGGtgagcagactgttgctagatatctgggctcggaggactcgccactgctcaaaggcagtgaggattttcgcactagaagctggaggacagggatccttgttaggtaggagcagaaagcttagaaaagtggtctcctgcagttacgtggcaaacacatcatgtaagtgataaattgggtatgcagttgaggagatttccaagtaaaatgttgaggatgctgcctggtttcttcttactgcttataatatagtgtgagagaagagagataaattgagaaagagactggtttttaaactgttaaa

attgaatcaggacttgatgattttgaaaattgtcagtctccccacatggaaaaagatgctgaaattaacaaatggcttctgagcatgtggcatagggtgtaactgtacagtcttttgtgattatgcataaagatcaaaggatgggagtagcaatgagtcacacagaggtctgttgcaagagattacaagggtgtaccatgcagaacctctccaccaaaccttagggcccttgggaagcttcagtgagttaccctgggggccatcttggcaggagctgaaggtagaaaggtagagtttatctctaaaagattcatgggtatggctcttgacaaatcgactatgagccccaccgaaacccacagaggacaggcaaagggtttgggaaagctgtttcacccacagtgctggcagattggtctgtaggggacagagtgcaaaatgaaagaagactgtcagagaccccaaactctgctgtcaagaagaaggctgataaaactacttggctgcaaacacgtggatctttcgtgagaaaagaaggatgacccagaggcagaagcccagaaggcagagccaagagacatggaatcttcccacatcttaaaacctgtttagggaacaccagcatctgtccagctggatttcagaaccaccattccttcatccttcccctgctgcctctttctgaacagcaatgtctcaagctttacccaccattgtgtgttgcatatgtagggggcagatagcttgtatctttagttttccagatcagaggaacatccaaagaaatctgttctacacctaaacccgatttagatgagattcgggactgtgagcatgaagggatctcaagaggggtgaatgtgttttgcatgcacaagggacaggagtcttggggacagaggacaggctgtggtggcagatactaaggtgacccccacaacccccacctctgccattcacacccttgaataatccccttctctggttgt

aagcagaacctgtggcttgcttatgaaggaggcggtatatatgtgattcatgtactgatcatattgtataagatcactggctggatgcagtggctcgtgcctgtaatcccaacactttgggaggctgaggcgggtggatcacctgaggtcaggagttcgagaccaggctggccaacatggcaaaaccccgcctctactaaaaatacaaaaattagccaggcatagtggtgcacgcctgtaatcacagctactcaagaggctgaagcaggagaattgcttgaactcaggaggtggaggtggcagtgagccaagatcgtgccactgcactccagcctcagtgacagagcgagactctgtctcaaaaaataaataaataaaatgttaagatcataacctgtctttctggggactctctcttgacgcctttgaagaagcaggctgccatgttgcaagctgcctcatggaggggatcagctgcgaggagctaagagccccctccagtcgatgctcaccaggaagctgaggtcttgtgtccagcaccctgcatagaactgaatgctgccatgtgagcttggaagcagagccatccacacagctgagccctagatgagaacccagtgctggctgacaccctgatggcaccttacagaggaccagttaggctgtgccaactcctgacctgcagaagctggggaacactgggtcgtatttgcagctgctggatttgtgggaatttgtcacacagcaatTGGGAGTCACACAGCCTGTGACGCCCCAACAATCCACAcctcctgcatctccctgccttcacttcctagcacactgccctgactccctctgccgcagccacgctggccctctgctgttcttcgaagccaccagggctgcattggctcccagcctttgctctcactgctttctcctcctagagagcccttcctgcatgtatatgtttgactcactcccttgcctccttcagacttgtactt

aaaaatctcagtaagcatttccctggctacccttttaaaaattgcaacccacttccatccccatccccaacatgccatatttcctttcttcttcttccttcttcc--------tttttttttttttttttttgacacaggt----tctctgtcacccagcctggagtgcagtgacatgatctcggctcactgcaacctctgcctcccCAG

+s panTro2.chrUn 134455 5104 +  58616431
ATCCTGGGATCACGGCCAGTGGGCTTAGAAGAAGCCATCTCTTTCTCATGCCAAGATGAGGCTCCCCCAGATTTGCTCAGACTTACCTATAGTCAGCAGCATCGGGGGTCAGGAAAGACTTCATGAAGCCATAAATGCATCCTTCTCGGGGCAGCACCTGGCTCTCCCAGGTGAGAGAGGACTCCATTTTCACAGGCAGGTGTGGGAGCTTCAGCACCCATCTCTGGGCCCAGAATGACCCACTGGAGACCTTACAGCTCTCCTGTCACCCCCAGTTCCTGCCCCGTCTGCAGCCTTGGAGGAGAATGGAGCTGAAGGGCCTGCCCTCTGTAGGGTGAGAAAGGGAGGCTAAAGCCTGGTGCCCACTGCCCTGGCCGCTCTGCATTGCAGGAGCTGCGCCCTTCCTTTCCTGGCACAGGGTCCACAGCCCCGAAACCCCGCTGTGTGGGAGCTGGGCACAGGGCAGCAGGACTAATCCCTGGAACAGCTCGGGGAGGATTAT-CCAGCCACTGTCAGCAGCGGTGCAGCCGGCTCATTCCCAGATA-GGGGAGGCCAGAGCCAGGGGCCTGCCACAAGTTGGAAGAGGCTGGGGAAGGGGAGGCCAGCAGAGGTGTCCTGGCTGTGGGTGGCTCTGAGGGGGCTCTCAAGGGTGGGGCTAAATCTCAGGGGCAGGATTATGTAAATCAAACCAATTCTAGCCACAGATTTAAAGCTTGGAGAAAAAAAAAAAAAACCCAGGCTGGTGGAAAGAATTTAAATTATAAAAACTTAGAAGTATGAAATGTGAAATCATCCCGCAGGTGCTTATTTAACAACGAAATCATCCCGACACAACGAGCCATATGTGAAAAGTCCTCCTCCCCCGACACATCCCCCAACAGGCACTCCTCACACCTCTACCACCCAAGTGCTGGCATCCTCCCTGTCCTGCTTCACCTGAGACACCC

CTTGTCTCATTAGACATGCAACTATGGGAGGGGTGACAGGAAGACAAGACACGATTTCCTCAGGCCCAGTTTGGTGTGGGGAGAAAGCCTCCTGATCCTGAAAGCAAGAATTTGACCAGAGCAGAAGTAATCAGTATGCAGATTGACTCTGTGGTATGTTAATGTTTATGCATAGATTATGAGGACCAGGTGAAAAGTGGGCCAGGGGAGCCAGATGTGTGTGTGAGTCATGGGTGGCTGAGATGAGGACAGGAGGGAAACTGGTTCGGAGGCTGCTGGCGATGGGGTGGGGGTGCCAGGAGGAAGGGAGGC-AGTGGTTTGAATGTGTGCATGAAAAAGCGGAGGACAGCGGGGTCTGGGTGAATTCGGGCAACCATTTGGACCGTGGAGAAAACTGCCTGCGTGCGGCTGAGGACCTGAACTGTTAATTTGTTTTTTAGCTAATGCAAAGATAAATATAAAAACtgatactccatccagttaccagaaaacatttaggtatgtgtgagacaacttgggtatgtgaacctaccttttcaatgtaaattcagtgaaacctaagtacagatcccatatttccaataaaaaggtaacatccaaactcagatgtcctatgagtataaaatacacaaagatcttctggacttagtatgaaaagggatttttttttggtcaggtacctcactagttatttttaaaataggattgcatgttgaaatgataatcttttggatatattgggttaagtaaatgtattattaaagttaatttcacttaaaaatgtttaatgtagctactagaaattttaaaattaagcatgttgctcaccttatgtttctattggacagctctCTCTAGACACAAAGGCTGCCAAGAGGGACCTCACTCTAGCTTCAGGGAGAAGAGAGGAATTAGCAAGGCCAAGCAGAGGCTCCTGAGGGCAGGGCCAAGGGTGGCTTGGTGGGGTGGGGATGGGATGCACAGAAAT

AACTCCAACCCTTAAGAAGGTGTTTCCTAGAGAAGGCTGTGACCTGTCAGTTTGTATACTGAGGCTTAGGAGCCTCTTGGATGCCCCCAGATCTGCACCCCTGAATTGCCCTGTGCCCCTGCCATCTTTGTTCCTGTGCTGGCATAGTGGTCTCACCTCCAGCAGtatcaccaccactgggcacaagcttctccagcacagcaactgtgtcttatttctccttgtactcccagtgttcacaccatgctgcactcacagaagactcttcggtgatattttgtggacagagagaatGCCTGTGAGAGTGGGCTGAA------GTTGGGCTCCAGAGACCTTAAGGAGGGGAGACCAGGTCCTGAGTAAAGTTGAAGGGGAGGGGCTGAGGCCTGCTAGCAAGCAGTCTCATCCCCTGGGGGAGTTCCAGGGACCCCTCAGAAGTGCAAGGGAACAGTGTTAGTGTTAGTCCAGTAACACAGCCCAGACCCTGCcttccacgtgggtttgacaggagcctcctaactgctcttctgcttccatttttgccccttcagtctattctcaacagggaagccagaggcatccttaaccatgtcagatcatgtggctcctcagctcaaagccTCATCTCAGAGGAAAGCTCTGGTCCCTTAAAAATGGCCCAGGTGGTGACAGACAGACTCTATGGtgagcagactgttgctagatatctgggctcggaggactcgccactgctcaaaggcagtgaggattttcgcactagaagctggaggagagggatccttattaggtaggagcagaaagcttagaaaagtggtctcctgcagttatgtggaaaacacatcatgtaagtgataaattgggtatgcagttcaggagatttccaagtaaaatgttgaggatgctgcctggtttcttcttactgcttataatacagtgtgagagaagagagataaattgagaaagagactggtttttaaactgttaaa

attgaatcaggacttgatgattttgaaaattgtcagtctccccacatggaaaaagatgctgaaattaacaaatggcttctgagcatgtggcatagggtgtaactgtacagtcttttgtgattatgcataaagatcaaaggatgggagtagcaatgagtcacacagaggtctgttgcaagagattataagggtgtaccatgcagaacctctccaccaaaccttagggcccctgggaagcttcagtgagttaccctgggggccatcttggcaggagctgaaggtagaaaggtagagtttatctctaaaagattcatgggtatggctcttgacaaatcgactataagccccactgaaacccacagaggacaggcaaagggtttgggaaagctgtttcacccacagtgctggccgattggtctgtaggggacagagtgcaaactgaaagaagtctgtcagagcccccaaactctactgtcaagaagaaggctgataaaactacttggctgcaaacacgtggatctttcatgagaaaagaaggatgacccagaggcagaagcccagaaggcagagccaagagacatggaatattcccacatcttaaaacctatttagggaacaccagcatttgtccagctggatttcagaatcaccattccttcatccctcccctgctacctctttctgaacagcaatgtctcaagctttacccaccattgtgtgttgcatatgtagggggcagatagcttgtatctttagttttccagatcagaggaacattcaaagaaatctgttctacacctaaacccgatttagatgagattcgggactgtgagcatgaagggatctcaagaggggtgaatgtgttttgcatgcacaagggacatgagtcttggggacagaggacaggctgtggtggcagatactaaggtgacccccacaacccccacctctgccattcacacccttgaataatccccttctctggttgt

aagcagaacctgtggcttgcttatgaaggaggcggtatatatgtgattcatgtactgaccatattgtataagatcactggctggacgcagtggctcatgcctgtaatcccaacactctgggaggctgaggcgggtggatcacctgaggtcaggagtttgagaccaggctggccaacatggcaaaaccctgcctctactaaaaatacaaaaattagccaggcatagtggtgcacacctgtaatcacagctactcaagaggctgaagcaggagaattgcttgaactcaggaggtggaggtggcagtgagccaagatcgtgccactgcactccagcctcagtgacagagtgagactctgtctcaaaaaataaataaataaaatgttaagatcataacctgtctttctggggactctctc--gacgcctttgaagaagcaggctgccatgttgcaagctgcctcatggaggggatcagctgcgaggagctaagagccccctccagtcaatgctcaccaggaagctgaggtcttgtgtccagcaccctgcatggaactgaatgctgccatgtgagcttggaagcagagccatccacacagctgagccccagatgagaacccagtgctggctgacaccctgatggcaccttacagagaaccagttaggctgtgccaactcctgacctgcagaagctggggaacattgggtcgtatttgcagctgctggatttgtgggaatttgtcacacagcaatTGGGAGTCACACAGCCTGTGATGCCCCAACAATCCACAcctcctgcatctccctgccttcacttcctagcacactgccctgactccctctgctgtagccacgctggccctctgctgttcttcaaagccaccaggcctgcatcggctcccagcctttgctctcactgctttctcctcctagagagcccttcctgcatgtatatgtttgactcactcccttgcctccttcagacttgtactt

aaaaatctcagtaagcatttccctggctacccttttaaaaattgcaacccacttccatccccatccccaacatgccatatttcctttcttcttcttcCTTCTTCCTAtttttttttttttttttttttttttgacacaggttctctctctgtcacccagcctggagtgcagtgacatgatctcggctcactgcaacctctgcctccccag

+
+a score=356594
+s hg18.chr1       30595 3890 + 247249719
GCAagaaaaggggaggatgccaataaaggatgcattgatttgtatttactacagtggacatcaagggcacattcttgctgtggccatcaagagactgtataaattctatgacttgtagttgtcccacttaagaaacaaagaagctgtgcatttctttactggtctagagctgctctagggcattttctctacagcaattctaggtttccccaccttgtgagtttagctttttctatattcaaagaaaagtcctcagccagagattctcaggagctta-----tagaacaatccaaactcttgggaatattaagtggagaggggtacgtgcaagacaccaacagcACTAGAAACAGTCCACATCTTTCCATGCGTGGAGGAGTTTATGCTCTATGTGAGTTCACTCCATCATTAATTCTTCAAACACAAGAGTGTTAAAGGAACAAGAGTTAATGGGTCCTGTCATTACACTTGTTCCCAGGATGACATTCTTCATCTTCCTCTTCTACAACCTGTTCTATATTCCCCTCATGTTTATCCAGTGCTTCTGCTAGTCTAGTTCACTTCCAAAGACCCATGATTACCATGGCCCTGTCAGGCTGTAATTGCTGCAATTTCCAATTTACAATTGTCATCATCTATGGTTGATAAAGgtatagcaatatttctatttcctcatgataatgaaggtcaattacaactgccagtataataacttatttctttgtctgccaacctacatacacaaggaagccaaaatgacagggagctactaaaactttattcttattggaatgcttactatgtacccagaagaagcattctccctactccagcagagcttaatgctgtaggtccaggaagctcaaattctccaagggagttttagtgagaggagccactctcaccctctgcccttggtttacaaacctgtatattctaggaccca

atatcttacaatgtccattggttcaaagtataacatgttaaagcacagagccccaactctgaaaagtaccatccctaaattggcatttagttgcacctttatatccacctttaaaagaaatatcttttaatgttctatcagactgatagattctgtttaatatagtatattatagcaccagtggatcatttggttgtatgcatattattgtaccttctctgctacaaaatatattcctttgtcctaaggtgtgttacaaagaacattaggcattctatgcatctttggatagtttaatggccaagacattgatggcaggagagtcaaagccacaggtggaaaacacatttatcccagtaagaacaaattgctattcttccactgtagagagggtaaacaatgtgccattacgttgccaattgaatgcctcaatcatgtcaagggctgaacatctatgactgtttctgaaaggtcaaacattcaacagaggctgtagctagaactgccttaatgataagagatcatgctgaattacccatgcaaaaccttaatacttgacacttatcactactttattcaagagcctattgtgcaagcataagtggctgagTCAGGTTCTCAACTCTGCTCATTAATACTATGCTTGGAGTATACAGTAAGATAAGAAACATAAATAAGAAGTGTACATTTGTTTCTTCCTGTTTTCTTCTGGCTATTGGATCAATTACATCCCATCTTAAGCTGACCCCTGTGTAATTAATCAATATCCGTTTTAAGCAGCAATCCATAGTTGTGCAGAAATTAGAAAACTGACCCACACAGAAAAACTAATTGTGAGAACCAATATTATACTAAATTCATTTGACAATTCTCAGCAAAGTGCTGGGTTGATCTCTATTTACGCTTTTCTTAAACACACAAAATACAAAAGTTAACCCATATGGAATGCAATGGAGGAAATCAATGACATATCAGATCTAGAAACTAAT

CAATTAGCAATCAGGAAGGAGTTGTGGTAGGAAGTCTGTGCTGTTGAATGTACACTAATCAATGATTCCTTAAATTATTCACAATAAAAAAAAAGATTAGAATAG-TTTTTTTAAAAAAAAAGCCCAGAAACTAATCTAAGTTTTGTCTGGTAATAAAGGTATATTTTCAAAAGAGAGGTAAATAGATCCACATACTGTGGAGGGAATAAAATACTTTTTGAAAAACAAACAACAAGTTGGATTTTTAGACACATAGAAATTGAATATGTACATTTATAAATATTTTTGGATTGAACTATTTCAAAATTATACCATAAAATAACTTGTAAAAATGTAGGCAAAATGTATATAATTATGGCATGAGGTATGCAACTTTAGGCAAGGAAGCAAAAGCAGAAACCATGAAAAAAGTCTAAATTTTACCATATTGAATTTAAATTTTCAAAAACAAAAATAAAGACAAAGTGGGAAAAATATGTATGCTTCATGTGTGACAAGCCACTGATACCTATTAAATATGAAGAATATTATAAATCATATCAATAACCACAACATTCAAGCTGTCAGTTTGAATAGACaatgtaaatgacaaaactacatactcaacaagataacagcaaaccagcttcgacagcacgttaaaggggtcatacaacataatcgagtagaatttatctctgagatgcaagaatggttcaaaatatggaaaccaataaatgtgatatgccacactaacagaataaaaaataaaaatcatattatcatctcaatagatgcagaaaaagcattaacaaaagtaaacattctttcataataagacatcagataaaacaaattaggaatagaaggaatgtaccgcaacacaataaaggccatatataacaagcccacagctaacatcataatagtaaaatcatcacactggtaaaaaaaatgaaagcttttcctctaaggtcagaaataatataaaggttcccactcttgctat

ttctattccatatcgtactaaaagtcctagccaggacaattagacaaaataaaaataaaaacacccaaattggaaagatagaagcaaacttttctgtttacagataacataatcttatatgtagaaaccccttaaaacttcagcaaaaaaaaaaaaaaaactacagagctagtaaattcagtgaagttgcagaatacaaaatcaacatacaaaaatcagtagtgtctctatacactaataaggacttaacagagaaagaagttaagaaaacaataccactaacaatagaatccaaaaaataaaatacttaggaataaattttaccaaacatctgtacactaaaaactataaaacattgaaaaaagaagttgaataagacacatataaatagaaagctatctcatgttaatagattagaaaaagtaatattgttaagatgtcctcactacttaaagcaatttatagatctaatgcatttattgcaatctcttcaaaatcccaaaggtatttttgacagaaataaaaaaaaaattctaaaatatgcatgaaaccacaaaagactgtgaatagctaaagcaatcttgagcaagatgaacaacactggaagcatcacactaccttatttcaaaatctactacaaagctatagtgatcaaagcaacatgatactgtcataaaaacacacagataaacctatggaatggaataaagagcacagaaataagtccacacatttacattcaattgattttcaacaacaatgtcaagaagacaatggggaaaagacaatctcttcaataaatgatgctggaaaaactatatatccacatgcagaagaatgcagttgaatcctgatttcataccatatgcaaaattcaactggaaatggattaaatacaaatttaaaacatgaaatggtataactattagaacaaaacatagaaaatattcttcctgacattggtttgggc

+s panTro2.chrUn 9695081 3894 +  58616431
gcaagaaaaggggaggatgccaataaaggatgcattgatttgtatttactacagtggacatcaagggcacattcttgctgtggccatcaagagactgtataaattctatgacttgtagttgtcccacttaagaaacaaagaagctgtgcatttctttactggtctagagctgctctagggcattttctctacagcaattctaggtttccccaccttgtgagtttagctttttctatattcaaagaaaagtcctcagccagagattctcaggagcttagagtatagaacaatccaaactcttgggaatattaagtggagaggggtatgtgcaagacaccaacagcACTAGAAACAGTCCACATCTTTCCATGCATGGAGGAGTTTATGCTCTATGTGAGTTCACTCCATCATTAATTCTTCAAACACAAGAGTGTTAAAGGAACAAGAGTTAATGGGTCCTGTCATTACACTTATTCCCAGGATGACATTCATCATCTTCCTCTTCTACAACCTGTTCTATATTCCCCTCATGTTTATCCAGTGCTTCTGCTAGTCTAGTTCACTTCCAAAGACCCATGATTACCATGGCCCTGTCAGGCTGTAATTGCTGCAATTTCCAATTTACAATTGTCATCATCTATGGTTGATAAAGGTATAGCAATATTTCTATTTCCTCATGATAATGAAGGTCAATTACAACGGCCAGTATAATAACTTATTTCTTTGTCTGCCAACCTACATACACAAGGAAGCCAAAATGACAGGGAGCTACTAAAACTTTATGCTTATTGGAATGCTTACTATGTACCCAGAAGAAGCATCCTCCCTACTccagcagagcttaatgctgtaggtccaggaagctcaaattctccaagggagttttagtgagaggagccactctcaccctctgcccttggtttacaaacctgtatattctaggaccca

atatcttacaatgtccattggttcaaagtataacatgttaaagcacagagccccaactctgaaaagtaccatccctaaattggcacttagttgcacctttatatccacctttaaaagaaatatcttttaatgttctatcagactgatagattctgtttaatatagtatattatagcaccagtggatcatttggttgtatgcatattattgtaccttctctgctacaaaatatattcctttgtcctaaggtgtgttacaaagaacattaggcattctatgcatctttggatagtttaatggccaaggcattgatggcaggagagtcaaagccacaggtggaaaacacatttattccagtaagaacaaattgctattcttctactgtagagagggtaaacaatgtgccattatgttgccaattgaatgcctcaatcatgtcaagggctgaacatctatgactgtttctgaaaggtcaaacattcaacagaggctgtagctagaactgccttaatgataagagatcatgctgaattacccatgcaaaaccttaatacttgacacttatcactactttattcaagagcctattgtgcaagcataagtggctgagTCAGGTTCTCAACTCTGCTCATTAATACTATGCTTGGAGTATACAGTAAGATAAGAAACATAAATAAGAAGTGTACATTTGTTTCTTCCTGTTTTCTTCTGGCTATTGGATCAATTACATCCCATCTTAAGCTGACCCCAGTGTAATTAATCAATATCCATTTTGAGCAGCAATCCATAGTTGTGCAGAAATTAGAAAACTGACCCACACAGAAAAACTAATTGTGAGAACCAATATTATACTAAATTCATTTGACAATTCTCAGCAAAGTGCTGGGTTGATCTCTATTTACGCTTTTCTTAAACACACAAAATACAAAAGTTAACCCATATGGAAAGCAATGGAGGAAATCAATGACATATCAGATCTAGAAACTAAT

CAATTAGCAATCAGGAAGGAGTTGTGGTAGGAAGTCTGTGCTGTTGAATGTACACTAATCAATGATTCCTTAAATTATTCACAAT--AAAAAAAGATTAGAATACTTTTTTTTTTAAAAAAAGCCCAGAAACTAATCTAAGTTTTGTCTGGTAATAAAGGTATATTTTCAAAAGAGAGGTGAATAGATCCACATACTGTGGAGGGAATAAAATACTTTTTGAAAAACAAACAACAAGTTGGATTTTTAGACACATAGAAATTGAATACGTACATTTATAAATATTTTTGGATTGAACTATTTCAAAATTATACCATAAAATAACTTGTAAAAATGTAGGCAAAATGTATATAATTATGGCATGAGGTATGCAACTTTAAGCAAGGAAGCAAAAGCAGAAACCATGAAAAAAGTCTAAATTTTACCATATTGAATTTAAATTTTCAAAAACAAAAATAAAGACAAAGTGGGAAAAATATGTATGCTTCATGTATGACAAGCCACTGATACCTATTAAATATGAAGAATATTATAAATCATATTAATAACCACAACATTCAAGCTGTCAGTTTGAATAGACaatgtaaatgacaaaactacatactcaacaagataccaacaaaccagcttcgacagcacgttaaaggggtcatacaacataatcgagtagaatttatctctgagatgcaagaatggttcaaaatatggaaatcaataaatgtgatatgccacactaacagaataaaaaataaaaatcatattatcatctcaatagatgcagaaaaagcattaacaaaagtaaacattctttcacaataagacatcagataaaacaaattaggaatagaaggaatgtaccgcaacacaataaaggccatatataacaagcccacagctaacatcataatagtaaaatcatcacaatggtaaaaaaaatgaaagcttttcctctaaggtcagaaataatataaaggtgcccactcttgctat

ttctattccatatagtactaaaagtcctagccaggacaattagacaaaataaaaataaaaacacccaaattggaaagatagaagcaaacttttctgtttacagataacctaatcttatatgtagaaaccccttaaaacttcagaaaaaaaaaaaaacaaactacagagctagtaaattcagtgaagttgcagaatacaaaatcaacatacaaaaatcagtagtgtctctatacactaataaggacttaacagagaaagaagttaagaaaacaataccattaacaatagaatccaaaaaataaaatacttaggaataaattttaccaaacatctgtacactaaaaactataaaacactgaaaaaagaagttgaataatacacatataaatagaaagctatctcatgttaatagattagaaaaagtaatattgttaaaatgtcctcactacttaaagcaatttatagatctaatgcatttattgcaatctcttcaaaatcccaaaggtattttttacagaaataaaaaaaaaattctaaaatatacatgaaaccacaaaagactgtgaatagctaaagcaatctagagcaagatgaacaacactggaagcatcacactaccttatttcaaaatctactacaaagctgtagtgatcaaagcaacatgatactgtcataaaaacacatagataaacctatggaatggaataaagagcacagaaataagtccacacatttacattcaattgattttcaacaacaatgtcaagaagacaatggggaaaagacaatctcttcaataaatgatgctggaaaaactatatatccacatgcagaagaatgcagttgaatcctgatttcataccatatgcaaaattcaactcgaaatggattaaatacaaatttaaaacatgaaatggtataactattagaacaaaacatagaaaatattcttcctgacattggtttnnnc

+
+a score=9778
+s hg18.chr1       34485 118 + 247249719
catcatttttctgatatgactctaaaagcacaggcaaaaaaagaaaaaatagacaaatgagactatgccaaattaaaaaatttctaacaacaaaagaaacgatcaatagagtgaaaaa

+s panTro2.chrUn 9699210 118 +  58616431
catcatttttctgatatgactctaaaagcacaggcacaataagaaaacatagacaaatgagactatgccaaattaaaccttttctaacaacaaaagaaacgatcaatagagtgaaaaa

+
+a score=709815
+s hg18.chr1       34612 7875 + 247249719
ttgaatgggagaaatatttgcaaactactcatccaaccggggattgatatccagaatatacaagtaacacaaatatgtcaaaagtaaa-------ataaataaataaataaataaataaataaattaaataaattatttaaaaatcggcagaggacaggaatagacatttctcaggagacaacatacaaagggccacagatacatcaaaaaatgctcaacatcactatttgtcagggaagtactaattaaaaccaaaatgagatgtcccctcaaacctgttagaatggctattatcaaaaagatgaaagatagcaactatcagagaggatgatagaaaagggaacccttgcatcatgtacaaattaaaaatagaactatcacatgatccaagaatcctacttctgggtatatagccaaaggaattgaaatcaatatgtcaaagggatatctgcactcctatgttattgcagcatgttcacaatggccaagatatagaatcaacctaactgttcatagacagatgaatggataaatgaaatgtgatatggaaaattattcagccttaaaaacagtaggaaattctgtcatttgagacaacgtggatgaacctagaggacattaagctaagtgaaataagctagacacagaaagacaaatattgcatgatctcacttagaatctaaaaaatctgaactcatagaagcagagaatagtatgatggttactagggttatctggcagggagaggatgaggaaatgggacattgttaataaaaggaaaaaaa-ttcaattagtaggattacattcaggggacccaatatacgacatgttgactgtaattaataatgtattgtatgcttgaaaattgctaatacagtatattgtaaatgttaatatgaggtaatatatgtgttaattaacttgatttattcattcaacaacatac

acatatattaaaacatcacactgtattccacaaatatatataatttttgtcaattaaaaaaTAATTTTTAAAAATGAGAAACAAAAAAGCTGACATTTTCAGATTAAAAAAATTATACAGAAGAATTAATTCATTAAAGTAAAAACAAATGTGGGAAAATGGTTTTTAAATATAATTTAAACCAAATTTAAAATAAGCATATaaagactatggacaaaacaagaaatccaaataaaaaataaacatatgaagaatattcaaactcactttttatcaaagaaatgtaaattTTAAAATATAGCATTGCTATTGTGTTTTCATAAATAATAATATATCATGGATGAGCCTGTGAGGAAACAGACACTCATACTCTGCAAAGCAATGACTAAgataattatgtcagatcatgaattacgttaattagcttgatggtggtcactgtttcacgataaatatacatatgtatcaaaacatcacattacacaccataaagatatataacttgttatCAAAAAGAAATATAGCAGttaaaatttaaaatttttaaaaaaCGTCTTTTTGAGGTTCGTACCTCACTTAAGTCACACTGTTCAAAATATTCATGCACTCATTTCTCTCATTCATGTGTTAATGTACAGGGTACGGGCCACTATAAATTCCTTCAGCAACTGGAAAGGAAACTTTATGTACTGAGTGCTCAGAGTTGTATTAACT-TTTTTTTTTTTTtgagcagcagcaagatttattgtgaagagtgaaagaacaaagcttccacagtgtggaaggggacccgagcggtttgccCAGTTGTATTAACTTCTAATTCAACACTTTAAGATTCTTAGCATTATTGCAGACAACATcagcttcacaagtgtgtgtcctgtgcagttgaacaagatcccacacttaaaaggatcctacactttttttaatgctctgctgtttctgccttgaaattcttaacaatttttttaaccaaagtcct

cacaaattcagtttacattagccctgcaatcatgtagacatcctgATTCCAGACAATGTGTCTGGAGGCAGGGTTTACAGGACTTCAAGAACCTTACCTTCTCAACTTTCATCTGCATCTTTACTCCCAACTATATATGAAGATGATGAAGATAGATATGGATGGTGCTTCTACCATACCCTCTTCCTCTGCCAAACTTCCTTGATCTAGGATAAggtcagtaaacttcttccgtaaaaggccaaaagtaaatattataggctctacaggccctagagtgtctgtcataactactcaactctt--attgtagcataaaaactgtcaacagacaatacagaaacaaatgagtgtgactgggttccagtgaaactttatttacaaaagatttgtcccatgagtcaaatttaccacctccAGATCTAGAGAAACAGTTTTGAGCCCTTTTATTTTGCTCAACAGTTAAGCATGGCTCCATGTCCCTTATATTTAGTCAGAACTCGGTATGTTTTAAGGAAAGAATGGTTACACGAAGACATACATTCATTCATTTATACAACACATTTTCAGTGTTGAATGATAAATTTTGGAATAGTTAACAGATGATAAAAGTGTTGTTTTCAGTCATCCCTATCCAATGAAGTAAAAAAAAAA-GTGTTGAATGGGAAGAAATCAAGAATAGTTATACGAATATCACCATTGCATTAAAGCTCTCTTCCTTGTTTCTAAAAGAATATCTTGACACACATTAAGCTCACTGACCCCCACACCATGAATGAGGGCATCTTCAACAATGGTGGATGACGTCTTAGTTTCCCTCAACTCAGTTAATCTAAGTAAGCTCATGGTATCACTTTCCTGTCCTAGAGGGAACATATTTCCTGCATTTTTCTTTTTTT-CCTTACTTTCCATCACCAAGTAACTCTTCTGATATTTTTTCTCTTGAGAAAATTAATATGACTCATAGATCTGGTTCCCAAGAGAAATC

AATGGAGGCCTGGTTACAAGGATCTAAGAAGCATCAATGGGTCACTAACATCTAGTGGTACTAATTAACTCTGTTAATCATTGGGAAGAAAATGTATATATACTTTTGTCTTGGAGCTGATTCTACTAGAAAGCAGAAATCAAAA-TGATCAGTTTCCCAGTGTCACTACTGCACACCCTGGAACAGAACAGGTAGGTCAGAAAAACGCTCCCAAAGTTTAGCAATGTCAAGGCAATCTCTCTCTTCTTACATTTCCCTTCAACCTTCTATCTCCTCCACTTTTCTGTTTTCCTCCTATCTCCAATTATTTCAATCCTCAGAGCATTATTCTTACAATCTTAATCACTAAATTATATTACACCCGTTAAAGGAGAGATTTCTAAATGCATTGACATTTGTACTGTCTCTCTTTGGAGAATTAGTATTATAAGGATCTGTTATCTCTTGTCACCTTCCTTATGTCATATGATATGTCACATTTCCCACTGCGGAGACCAAACATGTTCACATCGTGTGCGTTCCATTTTCCTAATGGAAAGTGGGGGGAAGTGATTTTCTGTCCTCATATAGAGAATGCTGGGGCCATTCCCTCTGTATGCCATATTTGATAAAGCATTTGATAATCTTAGTCAATGCCTGGGCCAAGAATTAAAGGGGTAATTATCAGAATGAAAATGGTTTAATGAAACTGTGTCTATCAGTTCTGAAAAGGGCCTCTATCACAATGAACTAAGGTAGTTATGAATAGAGCTAAaacttaggcaacaccatcctggacataggaacgggcaaagatttcatgacaaagacacggaaaccaatcacaacaaaagcaaaaattgagaagtggaatctaataaaacaatagcttctgcacagcaaaagaagctaccaacaaagtaaacagacaacctacagaatgggagaaaatatttgccaactgtaagtctgacaaaaatctaatatctggcagctataaggaacttaa

atttacaagacaaaaacaaccccattaaaaagtgggcaaagaacatgaatagacactctcaaaagaagatatacatatggttaacaagcatatgaaaaaaaagctcaatatactgagcattagagaaatgcaaatcaaaaccatattgagatatcatctcataccaggcagaatggctattattaaaaagtcaaaaataacagatatcggtgaggttacagagaaaagggaacacttatacactgttggtgggactgtaaattatttcaaccattgtggaaagcagtatgggatggcgattcctcaaaaagccaaaaacagaactatcattcaacccagcaattccattactgggtatatacccagaagaatataaatcgttctaccataaagacgcatgcatgagaatgttcattgcagcactactcacaatagcagagacatggaatcaacttaaatgcccatcagtaacagactggataaagaaagtgtggtacagatacaccgtggattactatgcagccataaaaaagaacaagatcatgtctttgacaggaacatggatggagctggaggctactatccttagcaagctaaggcaggaacagaaatccaaataccgcatgttctcacttatgagcgtgagataaatgatgagaacttgtaaacacaaagaaggaaacaacaggcagtggggtctacttgaggacgacgggaagagggagaggagcagaaaagataactactgactaccgggcgctacctgggggatgaaacaatctgtacaacgaacccccaggacatgagtttacctatgtaacaaaccttcacgtgtacccccgaacctaaaataaaagtcaaaaagaaaAAGAAAA------AAAGAAAAATCCATGCATATGATACATCAGTTAACAAGGCACTGGTGAAATTAATTTTAAGTATTATTGTCTCTTTGTGTTTTTGGTCTCAGAAAAGTTACGATTTCC

CTTAGTTCCTTAGGGCAGAGAGAATCTTCAATCACTGAAGTCAGGAGACACACATTCTATCTGATTTTCTACATTATCTGTTTGAAAAGGTTACCCACTTATTAGTGTTAAAGCCAAGATATCCAGCAAGGATAGCAACCAACTCTTAAGGTACTCTCCCTTAGGAGGATTCCTGATTCTTTAATGTTTTCTAAAAAAGCAAAACAAA----CAAACAAACAAAACAAAACACTAAATGTTTTCTCTTTCAACTTATTTGAATACACTCTTTTCTCACTGCTCTGAGCATGAATTCAATATTTCAGGGCAAACTAACTGAATGTTAGAACCAACTCCTGATAAGTCTTGAACAAAAGATAGGATCCTCTATAAACAGGTTAATCGCCACGACATAGTAGTATTTAGAGTTACTAGTAAGCCTGATGCCACTACACAATTCTAGCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTATCTCTTTTAGAAAACATAGGaaaaaattatttaataataaaatttaattGGCAAAATGAAGGTATGGCTTATAAGAGTGTTTTCCTATTGTTTTCAGTGTAGGACTCACTGTTCTAAATAACTGGGACACCCAAGGATTCTGTAAAATGCCATCCAGTTATCATTTATATTCCCTAACTCAAAATTCATTCACATGTATTCATTTTTTT-CTAAACAAATTAGCATGTAGAATTCTGGTTAAAATTTGGCATAGAACACCCGGGTATTTTTTCATAATGCACCCAATAACTGTCATTCACTAATTGAGAATGGTGATTTAACAAAGGATAATAAAGTTATGAAACCAATGCCACAAAACATCTGTCTCTAACTGgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtAAGAGGGAGAGAGAGAAAATTTCACTCCCTCCATAAATCTCACAGTATTCTTTT-CTTtttcctttcctttccttgctcttctttctctcctattgctttcctt

tcatttccttCTCATAAAAGAAAAATAACAATATAGAAAATAACAAAATATAGATGGTCAACCTTTTTAATATTAAGGTTACCTAAAATGCCATTATCCAAAGTGGTTCTCTAGAGATGCTGATGTATATACTTACATATTTTACAGTGTATTCAAATAAAGAGTATATTACATAAGACATATCCTTTTGTAACCAACTTTTGTCATTAACAATTTACTGGACTTGTCAACAAACCTAAATCTGTATCGTCTATAATGGCTACGTTCATTTTGGTATGAATCTTAATTACCCCTTTCTGCATTATTTAATGATTTTCTCATATGTCACTCTTAAATGTACTTCTAATTTTTCACTTTACATCACATAATGAATGGATCCAAATATGTTATGGATAGATATCTTCAAACTTTCTACTTACAAGTAGTGATAATAACAGATGTTCTCTCTAAAGTGTAGTTGGTATCAATTTTACTGACCTTTAAAAATATCTTAATGGGACAAAGTTCAAATATTTGATGACCAGCTATCGTGACCTTTATCTCTGTGGCTCTGTGGGCCTGTAGTTTTTACGTGCTTTTAGTGTATCATGATTAAATATTTTGTTTTAGTAAAGACACCATTATTTCCCAACTTCATATTCAAATTGTCAAAGGTATTAATCCTAGAGCAGAACTCTCAAAAGCACCAACTCTGATTCCTAACAAAGCATGGAAAAGCCCTCTCTCTGAGTTTCAGATACTCTTTTTTGTGGGGGTTGAGTTTCACTTTATTTAAAGTGAGTCTTAATCCTCCAACAAGTCAACAAGTGATTGGCTGGAATCACACGTATTGGAAAACCAGCGGAAGAGTAAGTCTTTGTATTTTATGCTACTGTACCTCTGGGATTAATTGCTCTTTCCCTCATTGGCCAGTCACTCTT-AGTGTGTGATTAATGCCTGAGACTGTGTGAAGTAAGAGATGGATCAGAggccgggcgcgggggctcgc

gcctgtcatcccagcactttgggaggccgaggcgggcggatcacgaggtcaggagatcgagaccatcctggctaacacggggaaaccccgtctccactaaaaatacaaaaagttagccgggcgcggtggcgggcgcctgcggtcccagctgctggggaggccgaggcgggagcatggcgggaaccgggaggcggagcctgcagtgagccgagatggcgccaccgcactccagcctgggcgacccagcgagactccgcctcaaaaaaaaaaaaagaaGATTGATCAGAGAGTACCTCCCCTAAGGGTACATGCAGATAAATACAGTTAAGGCGATTAACATTTCAAATAC-GGTGACTGTTTCTTACGTGGACGACGTTGTGTTGAACATGGGTGAGTAAGACTGAAGCAGCCGTAATTACTGCACGATGCGCATGGTAAAGAAGCACTCCGTTAGGGAAATTATATTCTTTGCCCCTCTAATCCTTCACTCCACCTGCCATATTCCCACATGATTTTTTTCTTTGCTGTTCTTGTCTAATTGttattaataattaataaataaCTTATGATCTAATTGTTATTAA----TAATAACTTATCATCACATGatttattaataaattaataaataacttattatCACCGCATTTCCCCAATTCATTTATCTTTCTTTCATTTTCTCTCTTTGTGTGTTTTCTGTCTTCATATTTCAGCACTTGCCACATATTTCCCACAAAATCATTTATGGTCAAACAACACTTCAACGTGTAGCATTTGTATTTCTCAATTCTTCCTCACTTTCTTCCTTCAGAATACTAAAGCTTCTTCTCTACTGACTGAGTCAATGGCCAATGGATAGAGTAAATAATTCTGCGGTATCTAAATTTGTATTGATTGGACTTTCAAGCTCTTGGGAGATGCATCTTTTTCTTTTTTGGTTCTTCTCTGTGTTCTACATGGGAATTATCCTGGAAAATCTCTTCATTGT
 GTTCACAGTAATTATTGACTCTCATTTAAATTCCCC 
+s panTro2.chrUn 9699336 7904 +  58616431
ttgaatgggagaaatatttgcaaactactcatccaactggggattgatatccagaatatacaagtaacacaaatatgtcaaaataaaataaataaataaataaataaataaataaataaataaataaaataaattatttaaaaatcggcagaggacaggaatagacatttctcaggagacaacatacaaagggccacagatatatcaaaaaatgctcaacatcactatttgtcagggaagtactaattaaaaccaaaatgagatgtcccctcaaacctgttagaatggctattatcaaaaagatgaaagatagcaactatcagagaggatgatagaaaagggaacccttgtatcatgtacaaattaaaaatagaactatcacatgatccaagaatcctacttctgggtatatagccaaaggaattgaaatcaatatgtcaaagggatatctgcactcctatattatggcagcatgttcacaatggccaagatatagaatcaacctaactgttcatagacagatgaatggataaatgaaatgtgatatggaaaattattcagccttaaaaatagtaggaaattctgtcatttgagacaacgtggatgaacctagaggacattaagctaagtgaaataagctagacacagaaagacaaatattgcatgatctcacttagaatctaaaaaatctgaactcatagaagcagagaatagtatgatggttactagggttatctggcagggagaggatgaggaaatgggacattgttaataaaaggaaaaaaaattcaattagtaggaatacattcaggggacccaatatatgacatgttgactgtaattaataatgtattgtatgcttgaaaattgctaatacagtatattgtaaatgttaatatgaggtaatatatgtgttaattaacttgatttattcattcaacaacatac

acatatattaaaacctcacactgtattccacaaatatatatactttttgtcaattaaaaaaTAATTTTTAAAAATGAGAAACAAAAAAACTGACATTTTCCGATTAAAAAAATTATACAGAAGAATTAATTCATTAAAGTAAAAACAAATGTGGGAAAATGGTTTTTAAATATAATTTAAACCAAATTTAAAATAAGCATATaaagacaatggacaaaacaagaaatccaaataaaaaataaacatatgaagaatattcaaactcactttttatcaaagaaatgtaaattttaaaatatagcattgctattgtgttttcataaataataatatatcatggatgagcctgtgaggaaacagacactcatactctgcAAAGCAATGACTAAgataattatgtcagatgatgaattatgttcattagcttgattgtggtcactgtttcatgataaatatacgtatgtatcacaacatcacattacacaccataaagatatataacttgttatCAAAAAGAAATATAGCAGttaaaatttaaaattttttaaaaatCTCTTTTTGAGGTTCGTACCTCACTTAAGTCACGCGGTTCAAAATATTAATGCACTCATTTCTCTCATTCATGTGTTAATATACAGGGTACGGGCCATTATAAATTCCTTCAGCAACTGGAAAGGAAACTTTATGTACTGAGTGCTCAAAGTTGTATTAACTATTTTTTTTTTTTtgagcagcagcaagatttattgtgaagagtgaaagaacaaagcttccacagtgtggaaggggacctgagcggtttgccCAGTTGTATTAACTTCTAATTCAACACTTTAAGATTCTTAGCATTACTGCAGACAACAccagcttcacaagtgtgtgtcctgtgcagttgaacaagatcccacacttaaaaggatcctacactttttttaatgctctgctgtttctgccttgaaattcttaacaatttttttaaccaaagtcct

cacaaattcagtttacattagccctgcaatcatgtagacatcctgATTCCAGACAATGTGTCTGGAGGCAGGGTTTACAGGACTTCAAGAACCTTACCTTCTCAACTTTCATCTGCATCTTTACTCCCAACTATATATGAAGATGATGAAGATAGATATGGATGGTGCTTCTACCATACCCTCTTCCTCTGGCAAACTTCCTTGATCTAGGATAAggtcagtaaacttcttccgtaaaaggccaaaagtaaatatcatagactctacaggccctagagtgtctgtcataactactcaactcttttattgtagcataaaaactgtcaacagacaatacagaaacaaatgagtgtgactgggttccagtgaaactttatttacaaaagatttgtcccatgagtcaaatttgccacctccAGATCTAGAGAAACACTTTTGAGCCCTTTTATTTTGCTCAACAGTTAACCATGGCTCCATGTCCCTTACATTTAGTCAGAACTCAGTATGTTTTAAGGAAAGAATGGTTACACGAAGACATACATTCATTCATTTATACAACACATTTTCAGTGTTGAATGATAAATTTCGGAATAGTTAACAGACGATAAAAGTGTTGGTTTCAGTCATCCCTATCCAATGAAGTAAAAAAAAAAAGTGTTGAATGGGAAGGAATCAAGAATAGTTATATGAATATCACCATTGCATTAAAGCTCTCTTCCTTGTTTCTAAAAGAATATCTTGACACACATTGAGCTCACTGCCCCCCACACCATGAATGAGGGCATCTTCAACAATTGTGGATGACATCTTAGTTTCCCTCAACTCAGTTAATCTAAGTAAGCTCATGGTATCACTTTCCTGTCCTAGAAGGAACATATATCCTGCATTTTTCTTTTTTTTCCTTACTTTCCATCACCAAGTAACTCTTCTGATATTTTTTCTCTTGAGAAAATTAATATGACTCATAGACCTGGTTCCCAAGAGAAATC

AATGGAGGCCTGGTTACAAGGATCTAAGAAGCATCAATGGGTCACTAACATCTAGTGGTACTAATTAACTCCGTTAATCATTGGGAAGAAAATGTATATATACTTTTGTCTTGGAGCTGATTATACTAGAAAGCAGAAATCAAAAGTTATCAGTTTCCCAATGTTACTACTGCACACCCTGGAACAGAACAGGCAGGTCAGAAAAATGCTCCCAATGTTTAGCAATGTCAAGGCAATCTCTTTCTTCTTACATTTCCCTTCAACCTTCTATCTCTTCCACTTTTCTGTTTTCCTCCTATCTCCAATTATTTCAATCCTCAGAGCATTATTCTTACAATCTTAATCACTAAATTATATTACGCCCGTTAAAGGAGAGATTTCTAAACGGATTGACATTTGTACTGTCTCTCTTTGGAGAATTACTATTATAAGGATCTGTTATCTCTTGTCACCTTCCTTATGTCATATGATATGTCACATTTCCCACTGCGGAGACCAAACATGTTCACATCGTGTGCATTCCATTTTCCTAATGGAAAGTGGGGGGAAGTGATTTTCTGTCCTCATATAGAGAATGCTGGGGCCATTCCCTCTGTATGCCATATTTGATAAAGCATTTGATAATGTTAGTCAATGCCTGGGCCAAGAATTAAAGGGGTAATTATCAGAATGAAAATGGTTTAATGAAACTGTGTGTATCAGTTCTGAAAAGGGCCTCTATCACAATGAACTAAGGTAGTTATGAATAGAGCTAAaacttaggcaacaccatcctggacataggaacgggcaaagatttcatgacaaagacacgaaaaccaatcacaacaaaagcaaaaattgagaagtggaatctaataaaacaatagcttctgcacagcaaaagaagctaccaacaaagtaaacagacaacctacagaatgggagaaaatatttgcaaactataagtctgacaaaaatctaatatctggcagctataaggaacttaa

atttacaagacaaaaacaaccccattaaaaagtgggcaaagaacacgaatagacactctcaaaagaagatatacatatggttaacaagcatatgaaaaaaaagctcaatatactgagcattagagaaatgcaaatcaaaaccatgttgagatatcatctcacaccaggcagaatggctattattaaaaagtcaaaaataacagatactggtgaggttgcagagaaaagggaacacttatacactgttggtgggactgtaaattatttcaaccattgtggaaagcagtatgggatggcgattcctcaaaaagccaaaaacagaactatcattcaacccagcaattccattactgggtatatacccagaagaatataaatcgttctaccataaagacgcatgcatgagaatgttcattgcagcactgctcacaatggcagagacatggaatcaacttaaatgcccatcagtaacagactggataaagaaaatgtggtacagatacaccgtggattactatgcagccataaaaaagaaccagatcatgtctttgacaggaacatggatggagctggaggctattatccttagcaaactaaggcaggaacagaaatccaaataccagatgttctcacttatgagcgtgagataaatgatgagaacttataaacacaaagaaggaaacaacaggcattggggtctacttgaggacgatgggaagaggcagaggagcagaaaagataactattgactactgggcgctacctgggggatgaaataatctgtacaacgaacccccaggacatgagtttacctatgtaacaaaccttcacatgtacccccgaaactaaaataaaagtcaaaaaaaaaAAAAAAAGAAAAAAAAGAAAAATCCATGCATATGATACATCAGTTAACAAGGCACTGGTGAAATTAATTTTAAGTATTATTGTCTCTTTGTGTTTTTGGTCTCAGAAAAGTTAGGATTTCC

CTTAGTTCCTTAGGGCAGAGAGAATCTTCAATCACTGAAGTCAGGAGACACACATTCTATCTGATTTTCTACATTATCTGTTGGAAAAGGTTACCCACTTATTAGTGTTAAAGCCAAGATATCCAGCAAGGATAGCAACCAACTCTTAAGGTACTCTCCCTTAGGAGGATTCCTGATTCTTTAATGTTTTCTAAAAAAGCAaaacaaataaacaaacaaacaaaACAAAATACTAAATGTTTTCTCTCTCAACTTATTTGAATACACTCTTTTCTCACTGCTCTGAGCATGAATTCAATATTTCAGGGCAAACTAACTGAATGTTAGAACCAACTCCTGATAAGTCTTGAACAAAAGATAGGATCCTCTATAAACAGGTTAATCGCCACGACATAGTAGTATTTAGAGTTACTAGTAAGCCTGACGCCACTACACAATTCTAGCTTTTCTCTTTAGGATGATTGTTTCATTCAGTCTTATCTCTTTTAGAAAACATAGGaaaaaattatttaataataaaatttaattGGCAAAATGAAGGTATGGCTTATAAGAGTGTTTTCCTATTGTTTTCAGTGTATGACTCACTGTTCTAAATAACTGGGACACCCAAGGATTCTGTAAAATGCCATCCAGTTATCATTTATATTCCCTAACTCAAAATTCATTCGCATGTATTCATTTTTTTTCTAAACAAATTAGCATGTAGAATTCTGGTTAAAATTTGGCATAGAACACCCGGGTATTTTTTCATAATGCACCCAATAACTGTCATTCACTAATTGAGAATGGTGATTTAACAAAGGATAATAAAATTATGAAACTAATGCCACAAAACATCTGTCTCTAACTGgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtAAGAGGGAGAGAGAGAAAATTTCACTCCCTCCATAAATCTCACAGTATTCTTTTTCTTtttcctttcctttccttgctcttctttctctcctattgctttcctt

tcatttccttCTCATAAAAGAAAAATAACAATACAGAAAATAACAAAATATAGATGGTCAACCTTTTTAATATTAAGGTTACCTAAAATGCCATTATCCAAAGTGGTTCTCTGGAGATGCTGATGTATATACTTACATATTTTACAGTGTATTCAAATAAAGAGTCTATTACATAAGACATATCCTTTTGTAACCAACTTTTGTCATTAACAATTTACTGGACTTGTCAACAAACCTAAATCTGTATCATCTATAATGGCTACGTTCATTTTGGTATGAATCTTAATTACCCCTTTCTGCATTATTTAATGATTTTCTCATATGTCACTCTTAAATGTACTTTTAATTTTTCACTTTAGATCACATAATGAATGGATCCGAATATGTTATGGATAGATATCTTCAAACTTTCTACTTACAAGTAGTGATAATAACAGATGTTCTCTCTAAAGTGTAGTTGGTATCAATTTTACTGACTTTTAAAAACATCTTAATGGGACAAAGTTCAAATATTTGATGACCAGCTATCGTGACCTTTATCTCTGTGGCTCTGTGGGCCTGTAGTTTTTACGTGCTTTTAGTGTATCATGATTAAATATTTTGTTTTAGTAAAGACACCATTATTTCCCAACTTCATATTCAAATTGTCAAAGGTATTAATCCTAGAGCAGAACTCTCAAAAGCACCAACTCTGATTCCTAACAAAGCATGGAAAAGCCCTCTCTCTGAGTTTCAGAGACTCTTTTTTGTGGGGGTTGAGTTTCACTTTATTTAAAGTGAGTCTTAATCCTCCAACAAGTCAACAAGTGATGGGCTGGAATCACACGTATTGGAAAACCAGCAGAAGAGTAAGTCTTTGCATTTTATGCTACTGTACCTCTGAGATTAATTGCTCTTTCCCTCATTGGCCAGTCACTCTTAAGTGCGTGATTAATGCCTGAGATTGTGTGAAGTAAAAGATGGATCAGAggctgggcgcggtggctcgc

gcctgtaatcccagcactttgggcggccgaggcgggcggatcacgaggtcaggagatcgagaccatcctggctaacaccgtgaaaccccgtctccactaaaaatacaaaaaattagccgggcgcggtggcgggcgcctgtggtcccagctgctggggaggctgaggcaggagaatggcgggaacccggaggcggagcctgcagtgagccgagatggcgccaccgcactccagcctgggggacccagccagactccgcctcaaaaaaaaaaaaaaaaGATTGATCAGAGAGTACATCCTCTAAGGGTATATGCAGATAAATACAATTAAGGCTATTAACATTTCAAATACGGGTGACTGTTTCTTACGTGGACGACGCTGTGTTGAACATGGGTGAGTAAGACCGAAGCAGCCGTAATTACCGCACGATGCGCATGGTAAAGAAGTACTCTGTTACGGAAATTATATTCTTTGCCCCTCTAATCCTTCACTCCACCTGCCATATTCCCACATGATTTTTTTCTTTGCTGTTCTTGTCTAATTGTTattaataattaataaataacttatgatctaattgttattaataattaataacttatgatcacatgatttattaataaattaataaataac---ttaTCACCGCGTTTCCCCAATTCATTTATCTTTCTTTCATTTTCTCTCTTTGTGTGTTTTCTATCTTCATATTTCAGCACTTGCCACATATTTCCCACAAAATCATTTATGGTCAAACAACACTTCAACGTGTAGCATTTGTATTTCTCAATTCTTCCTCACTTTCTTCCTTCAGAATACTAAAGCTTCTTCTCTACTGACTGAGTCAATGGCCAATGGATAGAGTAAATAATTCTGCGGTATCTAAATTTGTATTGATTGGACTTTCAAGCTCTTGGGAGATGCATCTTTTTCTTTTTTGGTTCTTCTCTGTGTTCTACATGGGAATTATCCTGGAAAATCTCTTCATTGT
 GTTCACAGTAATTATTGACTCTCATTTAAATTCCCC 
+
+a score=246514
+s hg18.chr1       42487 2748 + 247249719
AGGTACTGCCTACTGGCCAACATTTATCTTCTTGATCTGGGTCTTCTCCTACAGTTCTGACTTTTTCACTAACTGCAGCATCATTTCTTTTCCAAGATGCATCATACAGATATTTTTCATTTGTGTCATGCGTAAAAATTGAGATGGTGCTGCTCATAACCATGGCATAGAGCAGGTACACTGCCAATCTGTAAGCCTCCCCATTACCTGACCACAATGAACCCCAAAATGTGTGTTTCCTTTGTTGGAGGCATCCTGGATAGTCAGGATAATCCATGCTGTATCTCAGTTTGTTTTTGCCATAAACTTGCCTTTTTGTGGCCCTAATAGAGTAGGTAGTTTTCACTGTGATTTTCCTTATGTCATGAAACTTGCTTGTGTAGACACTTACAAACTAGAGGTTGTAGTCACTGCTAACAGTGGGCTTATATCCATAGCTACCTGTTTCTTATTAATAATATCCTATATTTTCATTTCGGTAACCGTCTAGAATCCTTCTTCAGGAGACTTATCTAAAGCATTTGTGTCATGTTAGATCACATCACAGTAGGGATTTTGTTTTTTATGCCATGTATATTTCTGTATGTGTAGCCTTTGCCTAAAACAACACATGATTAATATTTGTTCATTGTTCCTTTTGCTATCACCCCTGTCTAGGATCTACACATTAAGAAACAAAGACATGAACGTCTCCATGGAAAGACTGGGAAAATGGATTGCAGGTTCTAGCAGGATGTCATAATAAATGGTGCATATCCAGAGTGCAAGATGATTCAGTCTCACCAAGAACACTGAAAGTCACATGGCTACCAGCATTATTGTGATAAGAACTACTATTTTGGGAGATAGTTTAGCAAAGGTGCCATGTAGAAATTGATTAAGTCAGAGGTATCTTTAACTTGCCACCACAGAGAAGAGATTAATTTCATATACTTCCATTGAGAAGAG

AGATAAGAATACAAAACCAAGCTGATTTGCAGGAGTAAACTTGATATTCAAATACTATTTCCTGAATGACATTTTCTGAGACATGCTAATTGTAATTACTTTCAGCTTCAAAACATAATAAATTTATCTCATAGTAAGCATATAGATGGAATAAATAAAATGTGAACTTAGGtaaattataaattaataaagtatatttttaaaatttCCATTTTAATTTCTGTTTAAATTAGAATAAGAAACAAAAACAACTATGTAATACGTGTGCAAAGCCCTGAACTGAGATTTGACTTTACCTTGAGCTTTGTCAGTTTACGATGCTATTTCAGTTTTGTGCTCAGATTTGAGTGATTGCAGGAAGAGAATAAATTTCTTTAATGCTGTCAAGACTTTAAATAGATACAGACAGAGCATTTTCACTTTTTCCTACATCTCTATTATTCTAAAAATGAGAACATTCCAAAAGTCAACCATCCAAGTTTATTCTAAATAGATGTGTAGAAATAACAGTTGTTTCACAGGAGACTAATCGCCCAAGGATATGTGTTTAGAGGTACTGGTTTCTTAAATAAGGTTTTCTAGTCAGGCAAAAGATTCCCTGGAGCTTATGCATCTGTGGTTGATATTTTGGGATAAGAATAAAGCTAGAAATGGTGAGGCATATTCAATTTCATTGAAGATTTCTGCATTCAAAATAAAAACTCTATTGAAGTTACACATACTTTTTTCATGTATTTGTTTCTACTGCTTTGTAAATTATAACAGCTCAATTAAGAGAAACC-GTACCTATGCTATTTTGTCCTGTGATTCTCCAAGAACCTTCCTAAGTTATTCTACTTAATTGCTTTATCACTCATATGAATGGGAATTTCTTCTCTTAATTGCTGCTAATctcccccatcttcaaatactctaccgggcttctggaacaccacagcttcctggctttttctcctacctcctgggcaagtccttccctgtgtctttt

gttgagtgttcctcatctgcttaactaccaatcaacctattgcccctaatttgatctttggcctgttttcacttagattctatccctacgtatcacccattcccacagctttaatcaccatctaaacactaggggctctcaaaccttgtatttttctttctttctttctttctttctttctttctttctttctttctttctt------------tctttctttcttcctccttttctttccttttctttctttcattctttctttcttttttaaggggcagggtctcactatgttgctgaggctggtctcaaactcctgacctcaagcaatctgtctgcttcagcctcccaagtagctgagaatacagggacaagccattgcacctgaccctggtactatttcttgagttcctgatccacagatctaacctcctactttcctggatgccacacaagatcttccactcaacaagtctgcaactaaactagccttcctcttttcaaacctactcttctttcagtgttctcagtcacaataatttgtaccaactagttacctagttgcacaacccaaaatctgggaaaaataatagatttctttctccatagtacccccaaatcaataaatcatcaagtcttattctaccttccaaagagccttacatatgttcctttattttcatctgtaacaccactattcctgtctaagcctacctatgtcatttttggaagagaatatagtcacctatgcgaccttcccacttaaaatcctactatttacgcttcagtaaaagaaaaaaaatttttaatctaagtatgtaatt

+s panTro2.chrUn 9707735 2758 +  58616431
AGGTACTGCCTACTGGCCAACATTTATCTTCTTGATCTGGGTCTTCTCCTACAGTTCTGACTTTTTCACTAACTGCAGCATCATTTCTTTTCCAAGATGCATGATACAGATATTTTTCATTTGTGTCATGCGTAAAAATTGAGATGGTGCTGCTCATAACCATGGCATAGAGCAGGTACACTGCCAATCTGTAAGCCTCCCCATTACCTGACCACAATGAACCCCAAAATGTGTGTTTCCTTTGTTGGAGGCATCCTGGATAGTCAGGATAATCCATGCTGTATCTCAGTTTGTTTTTGCCATAAACTTGCCTTTTTGTGGCCCTAATAGAGTAGATAGTTTTCACTGTGATTTTCCTTATGTCATGAAACTTGCTTGTGTAGACACTTACAAACTAGAGGTTGTAGTCACTGCTAACAGTGGGCTTATATCCATAGCTACCTGTTTCTTATTAATAATATCCTATATTTTCATTTTGGTAACCATCTAGAATCCTTCTTCAGGAGACTTATCTAAAGCATTTGTGTCATGTTAGATCACATCACAGTAGGGATTTTGTTTTTTATGCCATGTATATTTCTCTATGTGTAGCCTTTGCCTAAAACAACACATGATTAATATTTGTTCATTGTTCCTTTTGCTATCACCCCTGTCTAGGATCTACACATTAAGAAACAAAGACATGAACGTCTCCATGGAAAGACTGGGAAAATGGATTGCAGGTTCTAGCAGGATGTCATAATAAATGGTGCATATCCAGAGTGCAAGATGATTCAGTCTCACCAAGAACACTGAAAGTCACATGGCTACCAGCATTATTGTGATAAGAACTACTATTTTGGGAGATAGTTTAGCAAAGGTGCCATGTAGAAATTGATTAAGTCAGAGGTATCTTTAACTTGCCACCACAGAGAAGAGATTAATTTCATATACTTCCATTGAGAAGAG

AGATAAGAATACAAAACCAAGCTGATTTGCAGGAGTAAACTTGATATTCAAATACTATTTCCTGAATGACATTTTCTGAGACATGCTAATTGTAATTACTTTCAGCTTCAAAACATAATAAATTTATCTCATAGTAAGCATATAGATGGAATAAATAAAATGTGAACTTAGGtaaattataaattaataaagtatatttttaaaatttCCATTTTAATTTCTGTTTAAATTAGAATAAGAAACAAAAACAACTATGTAATACGTGTGCAAAGCCCTGAACTGAGATTTGACTTTACCTTGAGCTTTGTCAGTTTACGATGCGATTTCAGTTTTGTGCTCAGATTTGAGTGATTGCAGGAAGAGAATAAATTTCTTTAATGCTGTCAAGACTTTAAACAGATACAGACAGAGCATTTTCACTTTTTCCTGCATCTCTATTATTCTAAAAATGAGAACATTCCAAAAGTCAGTCATCCAAGTTTATTCTAAATAGATGTGTAGAAATAACAGTTGTTTCACAGGAGACTAATCGCCCAAGGATATGTGTTTAGACGTACTGGTTTCTTAAATAAGGTTTTCTAGTCAGGCAGAAGATTCCCTGGAGCTTATGCATCTGTGGTTGATATTTTGGGATAAGAATAAAGCTAGAAATGGTGAGGCATATTCAATTTCATTGAAGATTTCTGCATTCAAAATAAAAACTCTAATGAAGTTACACATACTTTTTTCATGTATTTGTTTCTACTGCTTTGTAAATTATAACAGCTCAATTAAGAGAAACCGGTACCTATGCTATTTTGTCCTGTGATTCTCCAAGAACCTTCCTAAGTTATTCTACTTAATTGCTTTATCACTGATATGAATGGGAATTTCTTCTCTTAATTGCTGCTAATctcccccatcttcaaatactctaccgggcttctggaacaccacagcttcctggctttttctcctacctcctgggcaagtccttccctgtgtctttt

gttgagtgttcctcatctgcttaaccaccaatcaacctattgcccctaatttgatctttggcctgttttcacttagattctatccctacgtatcacccattcccacagctttaattaccatctaaacactaggggctctcaaaccttgtatttttctttctttctttctttctttctttctttctttctttctttctttctttctttctttctgtctttctttcttcctccttttctttccttttctttctttcattctttctttcttttttaaggggcagggtctcac--tgttgctgaggctggtctcaaactcctgacctcaagcaatctgcctgcttcagcttcccaagtagctgagaatacagggacaagccattgcacctgaccctggtactatttcttgagttcctgatccacagatctaatctcctactttcctggatgccacacaagatcttccactcaacaagtctgcaactaaactagccttcctcttttcaaacctactcttctttcagtgttctcagtcacaataatttgtaccaactagttacctagttgcacaacccaaaatctgggaaaaataatagatttctttctccatagtaccccaaaatc-ataaatcatcaagtacaattctgccttccaaaGAGCAAAACAAATGTTCATTTAGCTTCGTTTGTCACACCAATACTCGAGTCTAAGCCTACAGGAATCACACATGGAGGGGAATATAGTCACCTATGTGATCTTCCCACTCAAAATCGCATTATACATGCTTCAGTAAAAGAAAAAAAAGTGCTAATCTAAGTATGTAATT

+
+a score=245281
+s hg18.chr1       45644 2651 + 247249719
TGCATTTTAAGTTCAACATGAGCAGGACTTTGTCGTGTTCACCTCTATCACATCATAAATATAGCAAACAGTAAAACTATTGCAACATGACTAATGTATTGAACGATGCTTCAGCTTTCTTCTTACGTTCAATCACAGGTCATATGACTAAAGAACTTCCTTTTTAATCTCCTTTTCTATTCTCAATTAATTTCTTCTGCCTGCATCACCTCAAGTCTCTGGGGTGAAATCCACTAATGAATTCCTTTTGCAGCTTAAGCCAATTCCAATCTTGAGCCAATCTCAGGTGAAGAAGCCTGTAAATTATCACTCTCAGTCCTCTCTTGTACTACTAGGTCTCATGAACTCTTCATTAACAACTCCAGCTTCTCTGTTAGCCCAAAAGCCTTTTGCTGCCTAGAAAACCCATGATTCATGCCTCAGGAAACAGCCTTCAAATCACAACATGTTCTGTATCTGGCTGGCCAACTCCCTGCAACTTATTTCTGCCTAGATTCTCCCTCATTCATTTCAATACGCTGTTCGGCCTGCTACCCCAGTTTCCCACTTAGAACAATGGCACACAGGACAGGAGCACATTGGCACATCAGAATGACTTATGTACTGCTCATTGTGTTGCAGAAGAGACCTCTGTGGGGGCAATAGAACAGATTTTCCTCTCACGTCACTGTAGTTGTGGTTTCCCTAAGCACCTACACTGTTTCACCTCATCTTAGGTAGACAATAATCCATGTAACTGACTGTGTATCCTAATTTTAAAAAATATTTCTGCCCACATTATTCTGCAGTTTTTATCTTGCTTACGTATTTTTGGAATGTTACTATTTTTCAAAAATTAATTTGGGATCAACCAACACTTCTTATTCTGCTGCTGTTCTAGAGAAAATCATTTTCCTCATTTCTGAACAAGAGAAAATGAAATACAGCTCTAAACAAATGCCACTGTAA

ACCAAGGTGGAGCCTTTGCACTTTCAGGCCACCATGATAACCTGGAGATTAGATTTTTCTGTGTCTTTATATCAATAATAAAGCCAAGCTTCTCCAGGGGTATCCACTAGGCTTGTCTCAATGGCTCAATACAGGTCCTTTTGTGAATGATTACCTCACCCTCATGGAAACACACTCTTGTTACAGAAACTCAGAATGATTCTATTTTTTCTTTTATATTTGTATATGTTTTTCCAATACCTCTGAAAAAACTGATCCAAAAAAAA--TACAAATTTTAATTGTAGCCAGTCAATTCAGGAAGGATAAAGGTCAAAAACTTTCAAAGAAACCTTCAGCCCCAACACACTAAACTTTGGGAGCACAGGTTGGCATCCAGAGGTAAACATTTGCTATAACTGATAACAGGAGAAGGATCCATTTATTCACCTGTTATCAATTACAGGCATTGTATTTAAAGATCAGATGTTTTATATTTATTTCTTCAAATTTCATTCATGGTGCCATAAGTGAAGGTATCTCTGTCCACCCTGAATATATTTTCACTCCCTCATCTCAGTCATTCCGAACAATTCACACACTAAGATTACCCATGCTAAATGGGGATTCTTTTTTACTAGCCAATGTAGTACCTCAAATCCTTCCTTCCCTCCCCCTATTTCATCAGCAGGCAATTCTTTTGATACTTTTGTCAAGGGGAAATTGTGTGACTCAGAGATCTAGTCCCCAAGAGAAACTAATAATGGGCTGGGTATTGTCTGTCTCAGCAGCATCAGTGGGTCCCTCTCCTGTGCAGCTAATTAGCTTCCTTTCCAATATGAAGAATCTTATATATAGCTTTGTCTTTGGGGTATTACATAAATGAAGATTAAGCTATCTGAATTTCTCCTTCTCCTAAAAATGCACATCCTATGACTGAAAAGACAGGTAAAAGAGATGCTTTTAATTACAAAACTTTCCCTGTCGTGGTTGCTTCTCTCTATCCTTCTA

AACTCCCTTTCAATTTCTTCTCTTCTGTAACATATTTGTGCCCAAAATCTTCTGCTTTCTGAAATATTTTATCTTTTTCTTCCACACTATCTCTTATTTTCCAATTTTAATCATTAAATTATATTATGTCTTATAAAACTAATCCCACATATAAACCCCTATGATAATTTCAGTTTGTCCCTAGTATGAAGTTCTTTAAAGATGTGTAGTTTTCTAACTTTCATGCTCTCCAATTAATTATAAACTTCATTTTCCACTCTGAAAAGGAGATGTCTGATCTCAGCTATTTCCATCCTATTTGAAAACCAGATTTAGTTTTAAACCAGAGGAAGGGAATCTCAAGTCTTTACCTCCCACAGTCTGGTGTGATTCTCTCTCTTTTGGTATTACCTTCCTCCACATTGGAACACTCCAGCCAATGCATAGGCTGAGAGGCTATCTCAGATTCAGAAAGATTTGGCCTCATCCCAGGGGAGGGTACAGAGGAGCTGATGACTATGAATTCTGAAATGGAACTGTTCCAGG----TTGAAGAAATAAGAAAGGGAATTGGGAAGAGCAATGCCCAGTGAAAAAGAAGAAATAATATTTTAGGAAGTGAATGCTAATTTTATTTTAAACAAAATAAGAACTCAAGGAATAAGAGGGTTCTTCCAATAGGTTAGAGTGATCCTGTCAAACATATATGCTTCTAGATTTTTTTAAAGACTGTTTCTACT

+s panTro2.chrUn 9711251 2657 +  58616431
TGCATTTTAAGTTCAACATGAGCAGGACTTTGTCATGTTCACCTCTATCACATCATAAATATAGCAAAGAGTAAAACTATTGCAACATGACTAATGTATTGAACGATGCTTCAGCTTTCTTCTTACGTTCAATCACAGGTCATATGACTAAAGAACTTCCTTTTTAATCTCCTTTTCTATTCTCAATTAATTTCCTCTGCCTGCATCACCTGAAGTCTCTGGGGTGAAATCCACTAATGAATTCCTTTTGCAGCTTAAGCCAATTCCAATCTTGAGCCAATCTCAGGTGAAGAAGCCTGTAAATTATCACTCTCAGTCCTCTCTTGTACTACTAGGTCTCATGAACTCTTCATTAACAACTCCAGCTTCTCTGTTAGCCCAAAAGCCTTTTGCTGCCTAGAAAACCCATGATTCATGCCTCAGGAAACAGCCTTCAAATCACAACATGTTCTGTATCTGGCTGGCCAACTCCCTGCAACTTATTTCTGCCTAGATTCTCCCTCATTCATTTCAATACGCTGTTCGGCCTGCTACCCCAGTTTCCCACTTAGAACAATGGCACACAGTACAGGAGCACATTGGCACATCAGAATGACTTATGTACTGCTCATTGTGTTGCAGAAGAGACCTCTGTGGGGGCAATAGAACAGATTTTCCTCTCACGTCACTGTAGTTGTGGTTTCCCTAAGCACCTACACTGTTTTACCTCATCTCAGGTAGACAATAATCCATGTAACTGACTGTGTATCCTAATTTTAAAAAATATTTCTGCCCACATTATTCTGCAGTTTTTACCTTGCTTACGTATTTTTGGAATGTTACTATTTTTCAAAAATTAATTTGGGATCAACCAACATTTCTTATTCTGCTGCTGTTCTAGAGAAAATCATTTTCCTCATTTCTGAACAAGAGAAAATGAAATACAGCTCTAAACAAATGCCACTGTAA

ACCAAGGTGGAGCCTTTGCACTTTCAGGCCACCATGATAACCTGGAGATTAGATTTTTCTGTGTCTTTACATCAATAATAAAGCCAAGCTTCTCCAGGGGTATCCACTAGGCTTGTCTCAATGGCTCAATACAGGTCCTTTTGTGAATGATTACCTCACCCTCATGGAAACACACTCTTGTTACAGAAACTCAGAATGATTCTATTTTTTCTTTTATATTTGTATATGTTTTTCCAATACCTCTGAAAAAACTGATCCAAAAAAAAAATACAAATTTTAATTGTAGCCAGTCAATTCAGGAAGGATAAAGGTCAAAAACTTTCAAAGAAACCTTCAGCCCCAACACGCTAAACTTTGGGAGCACAGGTTGGCATCCAGAGGTAAACATTTGCTATAACTGATAACAGGAGAAGGATCCATTTATTCACCTGTTATCAATTACAGGCATTGTATTTAAAGATCAGATGTTTTATATTTATTTCTTCAAATTTCATTCATGGTGCCATAAGTGAAGGTATGTCTGTCCACCCTGAATATATTTTCACTCCCTCATCTCGGTCATTCCGAACAATTCACACACTAAGATTACCCATGCTAAATGGGGATTCTTTTTTACTAGCCAATGTAGTACCTCACATCCTTCCTTCCTTCCCCCTATTTCATCAGCAGGCAATTCTTTCGATACTTTTGTCAAGGGGAAATTGTGTGACTCAGAGATTTAGTCCCCAAGAGAAACTAATAATGGGCTGGGTATTGTCTGTCTCAGCAGCATCAGTGGGTCCCTCTCCTGTGCAGCTAATTAGCTTCCTTTCCAATATGAAGAATCTTATATATAGCTTTGTCTTTGGGGTATTACATAAATGAAGATTAAGCTATCTGAATTTCTCCTTCTCCTAAAAATGCACATCCTATGACTGAAAAGACAGGTAAAAGAGATGCTTTTAATTACAAAACTTTCCCTGTCGTGGTTGCTTCTCTCTATCCTTCTA

AACTCCCTTTCAATTTCTTCTCTTCTGTAACATATTTGTGCCCAAAATCTTCTGCTTTCTGAAATATTTTATCTTTTTCTTCCACACTATCTCTTATTTTCAAATTTTAATCATTAAATTATATTATGTCTTATAAAACTAATCCCACATATAAACCCCTATGATAATTTCAGTTTGTCCCTAGTATGAAGTTCTTTAAAGATGTGTAGTTTTCTAACTTTCATGCTCTCCAATTCATTATAAACTTCATTTTCCACTCTGAAAAGGAGATGTCTGATCTCAGCTATTTCCATCCTATTTGAAAACCGGATTTAGTTTTAAACCAGAGGAAGGGAATCTCAAGTCTTTACCTCCCACAGTCTGGTGTGATTCTCTCTCTTTTGGTATTACCTTCCTCCACATTGGAACACTCCAGCCAATGCATAGGCTGAGAGGCTATCTCAGATTCAGAAAGATTTGGCCTCATCCCAGGGGAGGGTACAGAGGAGCTGATGGCTATGAATTCTGAAATGGAACTGTTCCAGGTTGTTTGAAGAAATACGAAAGGGAATTGGGAAGAGCAATGCCCAGTGAAAAAGAAGAAATAATATTTTAGGAAGTGAATGCTAATTTTATTTTAAACAAAATAAGAACTCAAGGAAAAAGAGGGTTCTTCCCATAGGTTAGAGTGATCCTGTCAAACATATATGCTTCTAGATTTTTTTAAAGACTGTTTCTACT

+
+a score=547947
+s hg18.chr1       48332 5984 + 247249719
CTGGAATTTAGGAGGTCTGCCTTCTGATTCTGACTTCTTGAATGTATTGTTAGCCATTTAACCACACTGTGTTGTTTCTCATTCTACCTGTAGAATCTCAAAGTTCTTTCCCACTTCTATACAAAACTATAATTCTGAACATCCTTTTTGTTTAATATAAGTCTGCATTTCCTGTTTGAAGATATGTGTCCCAGACCCTAAATGACTGACAAATTTTAAATCTCCAATAGGAAAGATGACAAACTCTATGGAAACTTGGCTTCTGAAGAACTCCTAGAAGCTTTCCAAAGTCATCAGTGTTTCCTAAGAAGGCAGAGAAATCAAACACATGGTCTTTTCCTCCAGACAAGCTCCTTTGGGTCATCAGGATTTCTTCAACAATAAAATGTAATAATTCCAAATGTTTGTAACAGAATGGGTAGGACTTTCTTCACTTATTTAAATACTCCCTTTTTTATGCAACTGAGTTTTCATCAACAAGTACAAGCTTGTGAAGGAGTACTTTAAAATGCAATTTCTCTCTATTTTTGTGGGGGCTAATATTTTATTTCTCATATTGACAATTTATTATGCTGTTTTTAAAAAGttcattcatcaagtatttcttgagctttttctatgagacaggcactgttttaggcaagtaattatgcactgaacaatgcaaaaagtttccctgcactcatggactttaattttaCATTTATGAAAAGCTACAAATATTAGAATAAGTAAAATACTGCCTGGAGGCTAAAGCATATTTTGATCACTTATTCCCTAATTCTTTTAGAAGAGAACTCACCTGTCGGTTAGCTGAACCACTGCCAGTGATATCCAACTATACATTCAATCCCACCATACCTCATTATCACACCTATTCACTCACAAGCTTAAACTCTTAACTTTTCTCCACATATCAGTGACTATTTCCTACAGCTTTTCTTTTAC

TTTCCATGTTTGCAGTGACAATATACATAAACAGTGTATGAAAACTCAAGTAAAATCTACTCTCTCAGGTGTTCATAATGTATCAATGTATATTGCTTTAAGCCTGAAGGTAACCTAAGTAAAGATGTACCATGTTCCACCAATGCTTCTTTTGATCATCATTTTATCCTGTTTTTTCTTTAGGATTCTTTCTTATTCCTTCCCCTGACCCTTCTTTTATTCTCCAAATTTCTTTCCAATTCATCTTTGTTCTTCCCTTTCCTTTTTACTCTCTTTAAACATTCTATGGACTCTGCCTCCTTCACACTGATATTGAACGCCCATAGTTTCATATTTTGGATTGCGATTGTTTTATTTTAAAATGGCAAATGTTCATGTTATAAAGAGAATTTTTCAGTCTTTAGACTAATAGGTTCATGTAGTTTGGGATTTTCCTCTTTAAGAAAATTAATTATCACTCACACTCCAAGACAAACACCATTTCAGTAGCAATATGAATTTCAGTAGTAATAGGAATCTCCAAATATGACAAAGTAATTCAGACATTAATTGCTTTTGTTTTGGAATTGCTCTTATAAGATGAAATATCACTTTCATGATGAGAGTCCTAGAGTGCTTGGTTTATATATTGTATCTTAGTTTTAACAGGATAAAACACTTGATCCTAAGCAGTAAACATGATTCTTCAGCTTCAACTTCATTTCTTTATAAATAACTATTTATGAATTGGTGTTGAGCTTAGTAAGTCACCAAACACCTTCTGCTCAGCAGCATAAAGGACATTTCCATGAAACCTCCCAGGGATAATCTTATTTACTCTATAATGTTTCCCGGGTTCAATTCCTCTCCCAAAATTCTTTGTTCTTAAGCCCCTATGATCTGGGTGATCTAAATATGGGTAAGAAGTCCAGGGATAGCACTATGAATGAAGTGAAAATAGTAAAACATAGTTAAAAATGTAcagatgctctctgacttataatagggtt

acgtcctgataaatccatcataagtcaaaaatgcatttaatattcctaatgtacctcacatcatagtttggcctagcctaccttaaatgtgctcagaacactttcattagcttatataagatcacctaatacaaagcctattttataataaaatattgaatagctcacgtaatatactgactactatactcaagtacagtttcttctgaatgcatgtcactttctcaccattgtaaagtcaaacaattataagtcaaactatcacaagccagggaccatcCATATGTATTTCATTCAGAAAATGCTGGAAAGAGCATTTCGGAGAATATCTAGATGAGAGAAGGTAGAAAGCCATGCACAAATTCACTGAGAGTTTAAAAAAATACATGCATATTGTGGAGATAGAAATCAAATCTATTTGTCTCCATCTGCTGTATTCTTCCCAAAATATTATCTCTTCTTATCCCATTGTACTATATTGCATTTCTTTGACCATTTATTGTGTATCTCTTAATATTTCCCACTTCATCATTACTAACCTCACTCACTCTGAACTTGATGAGAGCACCTGAGCATTAATTTTTCTTATAATTATTTAATGATTACCAGAATTCGTTCAGTATGGCCAGCTCTGGTCAAAGTGAGGCAGGCAAGATGCTTTGTCAACTGCCTGGATGGAATGTCTCAAAAGGTTTCCATTTCATGGTAGCATTATGCAAAGTTCAAGACGTTTAATCAAGACCCTTCACTTACTTAACTATACCTCCTTGAGAATCCCATCTATGAAAAAATTCTAGTCATTATAAAAATGATTGATTAAATGAGGGAAGTAGTAGAGTTCTTCATTTCTTTAGTTGGTTTAGTCTCCTATGAGTCAATCCTA-TTTTCAAAATTCTTAATAAACCATTTATTCCTTCAACTTTCTATGCCATTTGATGTTTTGTAAAAAAAAAAATATAATATGTATACAAAAAGATATTTCAAAATC

TAGAAAGAGAGCTTTAGAGCTTTGTAAAGCTCTTTTAAAAATCAAAAACAACTACTGTTAATTAACATGTTGTACTATGCAATTTGTTTACCATTATTACTCTTGGTATTTTTAAGAAAAGTCTTTCCATTGTTATTATAAATGCTTCTATTGATATTTATTTTAATAACTGTTATTACAGTCCGTCATGTACATACACTATACTTAAACCTAATGTTTGGTATTTAAATCGTTTCAAGATTTTATCACTGTCAACAAAGTATGATGAATATTTTTATGCTGAAAACTTCTGTAAAAatagaattccaagagtattattgcaccaaaaggcatggacttaaaattcttgatacatgatttcaaaatattttctttaaggtttgaatcagtctatattccctccagcagcgtataaaagtgccaatttctctgatccttaGCCAGTTTGGGTAATAATAATTGTAAAACttttttttcttttttttt-gagacagagtctccctctgtcgccaggctgaagtgcagtggcgcaatctcggctcactgcaacctccgcctcccggggtcaagctattctcctgcctcagcctcccaagtagctgggactacaggcatgcaccaccatgcccagctaatttttgttatttttagtagagatggagtttccccatgttggacaggatggtctcgatctcttgacctcgtgatccaccctcctcggcctcccaaagtgctgggataacaggcgtgaacaaccatgcccggccTGTAAAACTTTTTCCTAATTTAACAGAAAAATAATAGTATTATATTTTATCATATTTCTTTGATTTCTAAGacacacatacacacacacacacacaTATCTGTATATACAAATACACGTATAGCTTACATTTTAATTCTTCATTTCATTTGTTCATTTATTAGGTCTTGGAGATTTTGTGAAACTGTTTAAATTCTTTTTTATACTATGAAGATATCAACCT

TTTGTCTCTACAGCATTTCAAATTCAAGTATGATTCACGTGTTGGTTTGGGGTAGATCATTATAGGCACATGTAGGAAACAGCTTTCAGAGATGCCTTAACCGTAATTATGCATTTGTATTCTAATTTTTATTTAATGTTATTATTGATTGCATTTTTAAAGATTCTGTATTTTTTAAACCATTTATTTGTATATGTTGGTATACAATCTTGCCATTTTCTGGGATTTCATATTTCCTTATTTTTGTTTTTTACCTTTTTTGGCTTGAATTTTTTGAGTTTTTATGCATTCTTTTCCAGTTTCTTAAGATGCTAATAAGTTCATGTATTTGAGCAATTGAGAACATTTAAAGCAATAGACTGCCTCTGAGCACAGCTTTGTCCATATTACATTAACCTTTTATACCCTGGGTTCCCACTAGTTTTTAAATAATCTACTATCAAATAAAAGATTTGTTAATAATAAATTTTAAATCATTAACACTTAACGCATTATTTTCAGTCACACTAAGTTGATTCCTTCGTTTCTTTCAGGTTGCTTCAGAGTCTTCCCTTCTATCTGATTCAGTGGACCAAGTAAATGACTCTCTGGTAACAGAATTTGTATTACTTGGACTTGCACAATCCTTGGAAATGCAGTTTTTCCTTTTTCTCTTCTTCTCTTTATTCTATGTGGGAATTATCCTGGGAAAACTCTTCATTGTGTTCACAGTGATCTTTGATCCTCACTTACACTCCCCCATGTATATTCTGCTGGCCAACCTATCGCTCATTGACTTGAGCCTTTCATCTACCACAGTTCCTAGGTTGATCTACGATCTTTTTACTGATTGTAAAGTTATTTCCTTCCATAATTGCATGATACAAAAGTTCTTTATCCATGTTATGGGAGGAGTTGAAATGGTGCTGCTGATAGTCATGGCATATGATAGGTACACTGCGATCTGCAAGCCTCTCCACTATCCAACTATTATGAATCCCAAAATGTGC

ATGTTTTTGGTAGCAGCAGCTTGGGTCATTGGGGTGATTCATGCTATGTCTCAGTTTGTTTTTGTCATAAATTTACCCTTCTGTGGCCCTAATAATGTGGGGAGCTTTTATTGTGATTTTCCTCGGGTTATTAAACTTGCATGCATGGACACTTATGGGCTAGAATTTGTGGTCACTGCCAACAGTGGATTCATATCGATGGGCACCTTCTTTTTCTTAATTGTATCATACATTTTTATTCTGGTCACTGTCCAACGACATTCCTCAAATGATTTATCCAAAGCATTCTTCACTTCGTCGGCTCACATCACCGTAGTGGTTTTGTTTTTTGCTCCATGCATGTTTCTCTACGTGTGGCCTTTCCCTACTAAGTCATTGGATAAATTTTTTGCCATCATGAACTTTGTTGTCACCCCTGTCGTAAATCCTGCCATCTATACTTTAAGGAACAAAGATATGAAGTTTGCAATGAGAAGGCTGAATCAACATATTTTAAATTCTATGGAGACGACATAACACATTTGGTTGATGAGAGCACAGGATAAATGCCATGGACCATCAAGACTCCTGTGATCACCATGATCACTATGGAACGCGCACATTTTTAGTATTGCCTGAAAAAACTGAAAAATCTGCAAAAAGGATGCATTAAATCTAAGAATTGTATTTCAGATAAAGTTGCAACATTTTTTGTTAATCATAAAAAGTATATATTTCTATCTAATGTGTGTATCTAATTAACAGCAATGACTACCTTTAATTTTGATGTAGTTATTTTATATCTGTATATAAGCACATACACATATATATGACCTAGGTTTATTTATCAGTATTTTTATGCTGATAATAAGCATCACTGGAAATTAATTTTCTTATGGAAATTATGTGGATCCAATGGATAAAATATGAGTTTATATAAATTAGTAAATGCCAAAATCAAGGAAGAAACAATTTTTATTTTAATTGTACTTTAAGTTAGATAAATGGTA

AGGTCAACAGCTTGTTACAACCCTTAAGTATTATTTTCAGGCTGATTGTCAATATGTTTTGTACAatgttctcacttataggtgggaattgaa

+s panTro2.chrUn 9714242 5977 +  58616431
CTGGAATTTAGGAGGTCTGCCTTCTGATTCTGACTTCTTGAATGTATTGTTAGCCATTTAACCACACTGTGTTGTTTCTCATTCTACCTGTAGAATCTCAAAGTTCTTTCCCACTTCTATACAAAACTATAATTCTGAACATCCTTTTTGTTTAATATAAGTCTGCATTTCCTGTTTGAAGATATGTGTCCCAGACCCTAAATGACTGACAAATTTTAAATCTCCAATAGGAAAGATGACAAACTCTATGGAAATTTGGCTTCTGAAGAACTCCTAGAAGCTTTCCAAAGTCATCAGTGTTTCCTAAGAAGGCAGAGAAATCAAACACATGGTCTTTTCCTCCAGACAAGCTCCTTTGGGTCATCAGGATTTCTTCAACAATAAAATGTAATAATTCCAAATGTTTGTAACAGAATGGGTAGGACTTTCTTCACTTATTTAAATACTCCCTTTTTTATGCAACTGAGTTTTCATCAACAAGTACAAGCTTGTGAAGGAATACTTTAAAATGCAATTTCTCTCTATTTTTGTGGGGGCTAATATTTTATTTCTCATATTGACAATTTATTATGCTGTTTTTAGAAAGttcattcatcaagtatttcttgagctttttctatgagacaggcactgttttaggcaagtaattatgcactgaacaatgcaaaaagtttccctgcactcatggactttaattttaCATTTATGAAAAGCTACAAATATTAGAATAAGTAAAATACTGCCTGGAGGCTAAAGCATATTTTGATGACTTATTCCCTAATTCTTTTAGAAGAGAACTCACCTGTCGGTTAGCTGAACCACTACCAGTGATATCCAACTATACATTCAATCCCACCATACCTCATTATCACACCTATTCACTCACAAGCTTAAACTCTTAACTTTTCTCCACATATCAGTGACTATTTCCTACAGCTTTTCTTTTAC

TTTCCATGTTTGCAGTGACAATATACATAAACAGTGTATGAAAACTCAAGTAAAATCTACTCTCTCAGGTGTTCATAACGCATCAATATATATTGCTTTAAGCCTGAAGGTAACCTAAGTAAAGATGTACCATGTTCCACCAATGCTTCTTTTGATCATCATTTTATCCTGTTTTTTCTTTAGGATTCTTTCTTATTCCTTCCCGTGACCCTTCTTTTATTCTCCAAATTTCTTTTCAATGCATCTTTGTTCTTCCCTTTCCTTTTAACTCTCTTTAAACATTCTATCGACTCTGCCTCCTTCACACTGATATTGAATGCCCATAGTTTCATATTTTGGATTGCGATTGTTTTATTTTAAAATGGCAAATGTTCATGTTATAAAGAGAATTTTTCAGTCTTTAGACTAATAGGTTCATGTAGTTTGGGATTTTCCTCTTCAAGAAAATTAATTATCACTCACACTCCAAGACAAACACCATTTCAGTAGCAATATGAATTTCAGTAGTAATAGGAATCTCCAAATATGATAAAGTAATTCAGA-ATTAATTGCTTTTGTTTTGGAATTGCTCTTATAAGATGAAATATCACTTTCATGATGAGAGTCCTAGAGTGCTTGGTTTATATATTGTATCTTAGTTTTAACAGGATAAAACACTTGATCCTAAGCAGTAAACATGATTCTTCAGCTTCAACTTCATTTCTTTATAAATAAATATTTATGAATTGGTGTTGAGCTTAGTAAGTCACCAAACACCTTCTGCTCAGCAGCATAAAGGACATTTCCATGAAAACTCCCAGGGATAATCTTATTTACTCTATAATGTTTCCCGGGTTCAATTCCTCTCCCAAAATTCTTTGTTCTTAAGCCCCTGTGATCTGGGTGATCTAAATATGGGTAAGAAGTCCAGGGATAGCACTATGAATGAAGTGAAAATAGTAAAACATAGTTAAAAATGTAcagatgctctctgacttataatagggtt

atgtcctgataaatccatcataagtcaaaaatgcatttaatattcctaatgtacctcacatcatagtttagcctagcctaccttaaatgtgctcagaacactttcattagcttatataagatcacctaatacaaagcctattttataatacaatattgaatagctcacgtaatatactgactactatactcaagtacagttt--tctgaatgcatgtcactttctcaccattgtaaagtcaaacaattataagtcaaactgtcacaagccagggaccatcCATATGTATTTCATTCAGAAAATGCTGGAAAGAGCATTTAGGAGAATATCTAGACGAGAGAAGGTAGAAAGCCATGCACAAATTGACTGAGAGTTTAAAAAAATGCATGCATATTGTGGAGATAGAAATCAAATCTATTTGTCTCCATCTGCTGTATTCTTCCCAAAATATTATCTCTTCTTATCCCATTATACTATATTGCATTTCTTTGACCATTTATTGTGTATCTCTTAATATTTCCCACTTCATCATTACTAACCTCACTCACTCTGAACTTGATGAGAGCACCTGAGCATTAATTTTTCTTATAATTATTTAATGATTACCAGAATTCGTTCAGTATGGCCAGCTCTGGTCAAAGTGAGGCAGGCAAGATGCTTTGTCAACTGCCTGGATGGAATGTCTCAAAAGGTTTCCATTTCATGGTAGCATTATGCAAAGTTCAAGACGTTTAATCAAGACCCTTCACTTACTTAACTATACCTCCTTGAGAATCCCATCTATGAAAAAATTCTAGTCATTATAAAAATGATTGATTAAATGAGGGAAGTAGTAGAGTTCTTCATTTCTTTAGTTGGTTTAGTCTCTTATGAGTCAATCCTAGTTTTCAAAATTCTTAATAAACCATTTATTCCTTCAACTTTCTATGCCATTTGATGTTTTGTCAAAAAAATA-TATAATATGTATACAAAAAGATATTTCAAAATC

TAGAAAGAGAGCTTTAGAGCTTTGTAAAGCTCTTTTAAAAATCAAAAGCAACTACTGTTAATTAACATGTTGTACTATGCAATTTGTTTACCATTATTACTCTTAGTATTTTTAAGAAAAGTCTTTCCATTGTTATTATAAATGCTTCTATTGATATTTATTTTAATAACTGTTATTACAGTCCGTCATGTACATACACTATACTTAAACCTAATGTTTGGTATTTAAATCGTTTCAAGATTTTATCACTGTCAACAAAGTATGATGAATATTTTTATGCTGAAAACTTCTGTAAAAatagaattccaagagtattattgcaccaaaaggcatggacttaaaattcttgatacacgatttcaaaatattttctttaaggtttgaatcagtctatattccctccagcagcgtataaaagtgccagtttctctggtccttagccagtttggATAATAATAATTGTAAAACttttttttcttttttttttgagacagagtctccctctgtcgccaggctgaagtgcagtggcgcaatctcggctcactgcaacctccgcctcccggggtcaagctattctcctgcctcagcctcccaagtagctgggactacaggcatgcaccaccatgcccagctaatttttgttatttttagtagagacggagtttccctatgttggacaggatggtctcgatctcttgacctcgtgatccaccctcctcggcctcccaaagtgctgagataacaggtgtgaaccaccatgcccggccTGTAAAACTTTTTCCTAATTTAACAGAAAAATAATAGTATTACGTTTTATCATATTTCTTTGATTTCTAAGacacacatacacacacacaca----tatctgtatatacaaatacacgtataGCTTACATTTTAATTCTTCATTTCATTTGTTCATTTATTAGGTCTTGGAGATTTTGTGAAACTGTTTAAATTCTTTTTTATACTATGAAGATATCAACCT

TTTGTCTCTACAGCATTTCAAATTCAAGTATGATTCACGTGTTAGTTTGGGGTAGATCATTATAGGCACATGTAGGAAACAGCTTTCAGAGATGCCTTAACCGTAATTATGCATTTGTATTCTAATTTTTATTTAATGTTATTATTGATTGCATTTTTAAAGATTCTGTATTTTTTAAACCATTTATTTGTATATATTGGTATACAATCTTGCCATTTTCTGGGATTTCATATTTCCTTATTTTTGTTTTTTACCTTTTTTGGCTTGAATTTTT-GAGTTTTTATGCATTCTTTTCCAATTTCTTAAGATGCTAATAAGTTCATGTATTTGAGCAATTGAGAACATTTAAAACAATAGACTGCCTCTGAGCACAGCTTTGTCCATATTACATTAACCTTTTATACCCTGGGTTCCCACTAGTTTTTAAATAATCTACTATCAAATAAAAGATTTGTTAATAATACATTTTAAATCATTAACACTTAACGCATTATTTTCAGTCACACTAAGTTGATTCCTTCCTTTCTTTCAGGTTGCTTCAGAGTCTTCCCTTCTATCTGATTCAATGGACCAAGTAAATGACTCTCTGGTAACAGAATTTGTATTACTTGGACTTGCACAATCCTTGGAAATGCAGTTTTTCCTTTTTCTCTTCTTCTCTTTATTCTATGTGGGAATTATCCTGGGAAACCTCTTCATTGTGTTCACAGTGATCTTTGATCCTCACTTACACTCCCCCATGTATATTCTGCTGGCCAACCTATCGCTCATTGACTTGAGCCTTTCATCTACCACAGTTCCTAGATTGATCTATGATCTTTTTACTGATTGTAAAGTTATTTCCTTCCATAATTGTATGATACAAATGTTCTTTATCCATGTTACGGGAGGAGTTGAAATGGTGCTGCTGATAGTCATGGCATATGATAGGTACACTGCGATCTGCAAGCCTCTCCACTATCCAACTATTATGAATCCCAAAATGTGC

ATGCTTTTGGTAGCAGCAGCTTGGGTCATTGGGGTGATTCATGCTATGTCTCAGTTTGTTTTTGTCATAAATTTACCCTTCTGTGGCCCTAATAATGTGGGGAGCTTTTATTGTGATTTTCCTCGGGTTATTAAACTTGCATGCATGGACACTTACGGGCTAGAATTTGTGGTCACTGCCAACAGTGGATTCATATCTATGGGCACCTTCTTTTTCTTAATTGTATCATACATTTTTATTCTGGTCACTGTCCGACGACATTCCTCAAATGATTTATCCAAAGCGTTCTTCACTTCGTCGGCTCACATCACCGTAGTGGTTTTGTTTTTTGCTCCATGCATGTTTCTCTACGTGTGGCCTTTCCCTACTAAGTCATTGGATAAATTTTTTGCCATCATGAACTTTGTGGTCACCCCTGTCTTAAATCCTGCCATCTACACTTTAAGGAACAAAGATATGAAGTTTGCAATGAGAAGGCTGAATCAACATATTTTAAATTCTATGGAGACGACATAACAGATTTGGTTGATGAGAGCACAGGATAAATGCCATGGACCATCAAGACTCCTGTGATCACCATGATCACTATGGAACGCGCACATTTTTAGTATTGCCTGAAAAAACTGAAAAATCTGCAAAAAGGATGCATTAAATCTAAGAATTGTATTTCAGATAAAGTTGCAACATTTTTTGTTAATCATAAAAAGTATGTATTTCTATCTAATGTGTGTATCTAATTAACAGCAATGACTATCTTTAATTTTGATGTAGTTATTTTATATCTGTATATAAGCACATACACATATATATGACCTAGGTTTATTTATCAGTATTTTCATGCTGATAATAAGCATCACTGGAAATTAATTTTCTTATGGAAATTATGGGGATCCAATGGATAAAATATGAGTTTATATAAATTAGTAAATGCCAAAATCAAGGAAGAAACAATTTTTATTTTAATTGTACTTTAAGTTAGATAAATGGTA

AGGTCAACAGCTTGTTACAACCCTTAAGTATTATTTTCAGGCTGATTGTCAATATGTTTTGTACAatgttctcacttataggtgggaattgaa

+
+a score=104160
+s hg18.chr1       54316 1163 + 247249719
caatgagaacacatggacacaggaaggggaacatcacacaccggggcctgttgtggggtggggggaagggggagggatagcattaggagatataactagtgttaaatgacgagttaatgggtgcagcacacccacatggcacatgtatacatatgtaactaacctgcacattgtgcacatgtaccctagaacttaaagtataataa--aaaaaaaTAGACTCTAGTACTCTGTATTATGCAAAATTTGTCTATGTTACACTTTTTTAACAACACAATCCTATTGCCCTTGAAATCTTCTTCAAAGCATTTCTCGAGTCACTCTTAAAAAGCATCTACAACCTAAAAGTATAGGAAGAGATTTATTTCCTGGAGAAGAGACCCCATTGAGATCTTAAAAGCACATTTAATGTGCCTGTGCTTAACTTAAGGT----GCTTAGGACAAAGAAGGCGATTGACATCTTTCAGGTAAAACCTGGTAAGTTTGGTGGTCAAGGAACACAACTGAGACATCACTTGGATGTATTCCTATGACTATTTTAAGAAACATAAATTGTGGTGACTCACTCAGCTCACTTTTAACTACTGCATGGTAATTAAAGATGCAAAATAAAATAAGTTACAAGAAGTGAGGTTTTTTATTGGTTAAAGCAATTTTTCTATATTTTCTCCGCAAGTTGGTCATAAAAGTTCTAAGCATTCCTCTTTTTATAAAATCGAAGCATTATTACTTACTCTCTTGTTAACCTATCTGGATTTTAATTTTGTAACTTTATTATATTTGTTTTGCTGTGATTCTTTAAAAAGCACCTTTAGACTCAGTGAGATAGCAAAAATATCCAAATAGGCCAAAAAATTGTGGCAATGTCCTCTCACTCAGGAAAATTCTGTGTGTTTTCTCTAATGGCCAAGGGAAAACTTGTGAGACTATAAAAGTTAGTCTCAGT

ACACAAAGCTCAGACTGGCTATTCCCAGATCTCTTCAGGTACATCTAGTCCATTCATAAAGGGCTTTTAATTAACCAAGTGGTTTACTAAAAAGGACAATTCACTACATATTATTCTCTTACAGTTTTTATG-----------------------------------CCTCATTCTGTGAAAATTGCTGTAGTCTCTTCCAGTTATGAAGAAGGTAGGTGGAAACAAAGACAAAACACATATATTAGAAGAATGAA

+s panTro2.chrUn 9720505 1203 +  58616431
caatgagaacacatggacacaggaaggggaacatcacacaccggggcctgttgtggggtgggggaaggggggagggatagcattaggagatatacctaatgttaaatgacgagttaatgggtgcagcacacccacatggcacatgtatacatatgtaacaaacctacacattgtgcacatgtaccctagaacttaaagtataacaacaaaaaaaaaaGACTCCAGTACTCTGTATTATGCAAAATTTGTCTATGTTACACTTTTTTAACAACACAATCCTATTGCCCTTGAAATCTTCTTCAAAGCATTTCTCGAGTCACTCTTAAAAAGCATCTACAACCTAAAAGTATAGGAAGAGATTTATTTCCTGGAGAAGAGACTCCATTGAGATCTTAAAAGCACATTTAATGTGCCCGTGCTTAACTTAAGGTAGGTGCTTAGGACAAAGAAGACGATTGACATCTTTCAGGTAAAACCTGGTAAGTTTGGTGGTCAAGGAACACAACTGAGACATCACTTGGATGTATTTCTATGACTATTTTAAGAAACATAAATTGTGGTGACTCACTCAGCTCACTTTTAACTACTGCATGGTAATTAAAGATGCAAAATAAAATAAGTTACAAGAAGTGAGGTTTTTTATTGGTTAAAGCAATTTTTCTATATTTT-TCCGCAAGTTGGTCCTAAAAGTTCTAAGCATTCCTCTTTTTATAAAATCGAAGCATTATTACTTACTCTCTTGTTAACCTATCTGGATTTTAATTTTGTAACTTTATTATATTTGTTTTGCTGTGATTCTTTAAAAAGCACCTTTAGACTCAGTGAGATAGCAAAAATATCCAAATAGGCCAAAAAATTGTGGCAATGTCCTCTCACTCAGGAAAATTCTGTGTGTTTTCTCTAATGGCCAAGGGAAAACTTGTGAGACTATAAAAGTTAGTCTCAGT

ACACAAAGCTCAGACTGGCTATTCCCAGATCTCTTCAGGTACATCTAGTCCATTCATAAAGGGCTTTTAATTAACCAAGTGGTTTACTAAAAAGGACAATTCACTACATATTATTCTCTTACAGTTTTTATGCTTCAAGGCAGTGCAAATAAAGGGAAATTTGTACTCCTCATTCTGTGAAAATTGCTGTAGTCTCTTCCAGTTATGAAGAAGGTAGGTGGAAACAAAGATAAAACAAATATATTAGAAGAATGAA

+
+a score=43935
+s hg18.chr1       55740 675 + 247249719
TCTTTCCCCAGGTCCGGTGTTTTCTTACCCACCTCCTTCCCTCCTTTTTATAATACCAGTGAAACTTGGTTTGGAGCATTTCTTTCACATAAAGGTACAaatcatactgctagagttgtgaggatttttacagcttttgaaagaataaactcattttaaaaacaggaaagctaaggcccagagatttttaaatgatattcccatgatcacactgtgaatttgtgccagaacccaaatgcctactc-----------------------------------ccatctcactgaGACTTACTATAAGGACATAAGGCatttatatatatatatattatatatactatatatttatatatattacatattatatatataatatatattatataatatatattatat-tatataatatataatataaatataatataaattatattatataatatataatataaatataatataaattatataaatataatatatattttattatataatataatatatattatataaatataatatata---aattatataatataatatatattatat-aatata--atatattttattatataaatatatattatatt------atataatatatattttattatataatatatattatatatttatagaatataatatatattttattatataatatatattatataatatatattatatttatatataacat

+s panTro2.chrUn 9721736 704 +  58616431
TCTTTCCTCAGGTCCGGTGTTTTCTTACCCACCTCCTTCCCTCCTTTTTATAATACCAGTGAAACTTGGTTTGGAGCATTTCTTTCACATAAAGGTACAaatcatactgctagagttgtgaggatttttagagcttttgaaagaataaactcattttaaaaacaggaaagctaaggcccagagatttttaaatgatattcccatgatcacactgtgaatttctgccagaacccaaatgcctactcccaatatatattatataaatataacatatattttaCCATCTCACTGAGACTTACTATAAAAACATAATACATTTTtatatatatatataatatatataata----taaatataatacatattat-tatattatatatattatataa---atattatatatatttattatat--tatatatattatataa---atataatatattttattatataaatataatatatattatctaaatataatatatattttattatataatgt--tatatattatctaaatataatatatattttattatataa-atataatatattatctaaatataatatatattttattatataaatataatatatattatctaaatataatatatattttattatata--atataatatatattatctaaatataatatatattttattatatga-atataatatatattatatattatatttatatttattat

+
+a score=772400
+s hg18.chr1       56415 8433 + 247249719
atattattatataaaatatgtataatatatattatataaatatatttatatattatataaatatatatattatatataatTCTAATGGTTGAATTCCAAGAATAATCTATGGCATGAAAGATTTTACCTGTCAACAGTGGCTGGCTCTTCATGGTTGCTACAATGAGTGTGTAAGATTCTGAAGGACTCCTTTAATAAGCCTAAACTTAATGTTCAACTTAGAATAAATACAATTCTTCTAATTTTTTTTGAATAATTTTTAAAAAGTCAGAAATGAGCTTTGAAAGAATTATGGTGGTGAAGGATCCCCTCAGCAGCACAAATTCAGGAGAGAGATGTCTTAACTACGTTAGCAAGAAATTCCTTTTGCTAAAGAATAGCATTCCTGAATTCTTACTAACAGCCATGATAGAAAGTCTTTTGCTACAGATGAGAACCCTCGGGTCAACCTCATCCTTGGCATATTTCATGTGAAGATATAACTTCAAGATTGTCCTTGCCTATCAATGAAATGAATTAATTTTATGTCAATGCATATTTAAGGTCTATTCTAAATTGCACACTTTGATTCAAAAGAAACAGTCCAACCAACCAGTCAGGACAGAAATTATCTCACAATAAAAATCCTATCGTTTGTACTGTCAATGATTAGTATGATTATATTTATTACCGTGCTAAGCAGAAGAGAAATGAAGTGAATGTTCATGATTTATTCCACTATTAGACTTCTCTTTATTCTTAAAAATATTTAAGATCACTAAATTTTTATAGGACTTTAAAAACAGTAATGTGCTGCTTTGAGTGTGTAGGACTAAGAAATGGGATTCAGAGTAGTAAAGAGAAAAGTGGAATTTCCAAGCACTATGAATTACTGTTCTTTAAAAAACAGCAAAAATCAAATAACAGTATTCCTCCAAAAAAGATGGCAAGTGTAAACTCTATACCTTC

ATGTCTCCCGTGGAATGTTAGTGATCAATTTCCACTTCTCTCTTTTACATCTTACTTGCCCATTAACTCTTATACCTAATCCAAAGATTGTTAATATGGCTATGTCTCACTTTCAGGACACCTTTTATTTGTTACTTCTCTTCACTGCAAAACTTCTTGAAACAGTACTTATTTTCTCTCCTCCATACACAATTGAAATGGCTCTCAACTCATGCCCAGAAGTCAGTGTTCAGTCTCTCACCTGGCAGATAGCAACTTACAAAGATGCCCCAACAATACCTCCTTGTGTCTAGACAGTCATCATTATCCTTTACCTTTTTCTGTATTTATTTCTGCTCCTAAAAGGGATCTCTATGTAAAGTATTGTTATACTAGTGCTTGTTATAATTATTATCAGAGTTAAAGCCATCACAATGTTCCCAATTACTTAAAGACATTGGAATAACATTTTTTTTATTTTCCACATCTTGCCAAAAAATATTTTGTTATCAGTACCTTaataatggctattatatattgaccattactatttgctagaaaatttatatacctggtcgtatccaatcctcacagaacttctataaagttgtgctattatcacctatattttccagatgtggccgtaagactgaaatcacttaggtgacttgtctaaggtcattcagatacatagtagataacccaggatttgaacacaggcctcctagcacacaagctcatatcttaactactttaatacgttgctcGATGGGATCTTACAGGTCTTCATTCACCCCTTTCCTGCTCACACAACCACAACCTGCAGCTATTACCTATTGTTAGGCTTAAAATAATTACTTGGCTTCATTTCCAAGCTCCCTCCCTTCCAATTCACATTGAGTCCAGAGCTAAATTAAACAATCATTCAAAATTTTTCAGTAGTTCTTGTCTCTATAATAAAACAGAAATGCTTTAGAAAGCATTCCAAAATCTCTTACCAGTTTTATCTC

CTATGAAAGTCCTTCACactttctctcatttaaactttattgcattttcctcactttttctcacttcacttttgaattccctattcttttatcctctgttaatttttaagtattatatttgtgatattattttttctttttttctattttttatctttcatttcattttggcctatttttttctcttAAGAACTTTAATATCACCAAATAACATGTGTGCTACAAACTGTTTTGTAGTTCAAAGAAAAAGGAGATAAACATAGAGTTATGGCATAGACTTAATCTGGCAGAGAGACAAGCATAAATAATGGTATTTTATATTAGGAATAAACCTAACATTAATGGAGACACTGAGAAGCCGAGATAACTGAATTATAAGGCATAGCCAGGGAAGTAGTGCGAGATAGAATTATGATCTT-----GTTGAATTCTGAATGTCTTTAAGTAATAGATTATAGAAAGTCACTGTAAGAGTGAGCAGAATGATATAAAATGAGGCTTTGAATTTGAATATAATAATTCTGACTTCCTTCTCCTTCTCTTCTTCAAGGTAACTGCAGAGGCTATTTCCTGGAATGAATCAACGAGTGAAACGAATAACTCTATGGTGACTGAATTCATTTTTCTGGGTCTCTCTGATTCTCAGGAACTCCAGACCTTCCTATTTATGTTGTTTTTTGTATTCTATGGAGGAATCGTGTTTGGAAACCTTCTTATTGTCATAACAGTGGTATCTGACTCCCACCTTCACTCTCCCATGTACTTCCTGCTAGCCAACCTCTCACTCATTGATCTGTCTCTGTCTTCAGTCACAGCCCCCAAGATGATTACTGACTTTTTCAGCCAGCGCAAAGTCATCTCTTTCAAGGGCTGCCTTGTTCAGATATTTCTCCTTCACTTCTTTGGTGGGAGTGAGATGGTGATCCTCATAGCCATGGGCTTTGACAGATATATAGCAATATGCAAGCCCCTACACTACACTACAAT

TATGTGTGGCAACGCATGTGTCGGCATTATGGCTGTCACATGGGGAATTGGCTTTCTCCATTCGGTGAGCCAGTTGGCGTTTGCCGTGCACTTACTCTTCTGTGGTCCCAATGAGGTCGATAGTTTTTATTGTGACCTTCCTAGGGTAATCAAACTTGCCTGTACAGATACCTACAGGCTAGATATTATGGTCATTGCTAACAGTGGTGTGCTCACTGTGTGTTCTTTTGTTCTTCTAATCATCTCATACACTATCATCCTAATGACCATCCAGCATCGCCCTTTAGATAAGTCGTCCAAAGCTCTGTCCACTTTGACTGCTCACATTACAGTAGTTCTTTTGTTCTTTGGACCATGTGTCTTTATTTATGCCTGGCCATTCCCCATCAAGTCATTAGATAAATTCCTTGCTGTATTTTATTCTGTGATCACCCCTCTCTTGAACCCAATTATATACACACTGAGGAACAAAGACATGAAGACGGCAATAAGACAGCTGAGAAAATGGGATGCACATTCTAGTGTAAAGTTTTAGATCTTATATAACTGTGAGATTAATCTCAGATAATGACACAAAATATAGTGAAGTTGGTAAGTTATTTAGTAAAGCTCATGAAAATTGTGCCCTCCATTCCCATATAATTTAGTAATTGTCTAGGAACTTCCACATACATTGCCTCAATTTATCTTTCAACAACTTGTGTGTTATATTTTGGAATACAGATACAAAGTTATTATGCTTTCAAAATATTCTTTTGCTAATTCTTAGAACAAAGAAAGGCATAAATATATTAGTATTTGTGTACACCTGTTCCTTCCTGTGTGACCCTAAGTTTAGTAGAAGAAAGGAGAGAAAATATAGCCTAGCttataaatttaaaaaaaaatttatttGGTCCATTTTGTGAAAAACATAAAAAAAGAACTGTCACATCTTAATTTAAAAAATATATGCTTAGTGGTAAGGAGATATATGTCAACTTTTAAGA

GGTTGAAAAACAAACGCCTCCCATTATAAGTTTATACTTCACCTCCCACCACTATAACAACCCAGAATCCATGAGGGCATTATCAGGAGTGAGTGGAAGAGTAAGTTTGCCAATGTGAAATGTGCCTTCTAGGTCCTAGACGTCTGTGGTATAACTGCTCATAAGCAGTAGAAAGAATTTAGAGGGATCCAGGCTCTCATCACGTTGGCACAAAGTATATTACTTGGATCCATCTATGTCATTTTCCATGGTTAATGTTTaaaagcacaggctttaaagtaaaaaacaaagagctggattcaactctactgactcttattaatcatgattttgggcacattacgtagctttcatgagctttagtttctacatttataaacaggagattatacctattatgcatggttattatgaaggaaaatgacaaaatagatataaatcaaatagcccacttcgagacatattaagcatgaataaacattagatactattaAAATCCTATATATTAACAAAGCCAAAAGTTTCAAACTTTACTTTTTCCCAACATTCTTGTGAAATATGACACATCCCAATCTTAACAGATGCTCATTTGGGATACTGTACTTGTGAGTGGAAGTGTGTATATTTGTGTGCAAGTGTGTACTCATATACTTCCACCTTACCACCCTAGAAAGGCATGATGAAAATTTAAGATAGAAGGAAAATATAAATTGAAAAAAAAAAACCTTAACAAATGATTCTGACAAATATCTTCTCTTTCCAGGGAGAATCACTGAGCCAGAATAAAATTGAACACTAAATATTCTAAGAAAAAAGGAATCTAGTTTGTCAAAATGTGACTTGAATTAATAGATAAGGAGAGTCAGATGATAAGAGGGTCAAAATTATGTTTATCTTAGGAAAAGTAGAATAGAAAATTTATAAGCAGATTAAAAACACATAATAAAAGTAGTAAATAATAATGACAGTATCTCAAATcagtgcagggg

ggaaaggcctactaatgtgatggtgggataattggatagcaatatgggaaaagatatatttaatttatttgctacaccaaatgccaggacaatctctaagtgaattcaagacataactcttttttcaaaaaaactatgcaaatattaaaagaaaacaagttaatgtttttataatctatgaatatggtaaagatGGATAACATTGACTATCAAATTAATTTTTAATGCGTAATAAAACTATGAGAAAATTTAAAAGTGAGAAGAAACTACTTGTAACTCACATAATAGActagtacttctaacacatagggaacttctaaaacaaaacccaaaatattaataggaaaatgggcaaaacagttaaacttacagttcataCATAAGGAGAATCAGTCTTTTTTTTTTTTTTTACAGTTGTAGGCAGAAAACTTTTATTTTTCATTTATTTGTAAAATTTACCCCTAATTTATTCATAATTCATTTAACTGCTAAGGGCATTAATGTGTACAACGCCATGGGAGAAACCAGTATATTCAGAATTTCTCCTGAAATTTGACCAGAAGTTATGGGCATCCCTCCCCTGGGAAGGAGGCAGGCAGAAAAGTTTGGAATCTATGTAGTAAAATATGTTACTCTTTtatatatatacatatatgtgtgtatatgtgtatatatatatacac--------------acatatatacatacatacatacatacatatTATCTGAATTAGGCCTGGTCttttttaatactttaagttctgggatacatgtgcagaatgtacaggtttgttacacaggtatacacctgccatggttgtttgctgcacccatcaactcaccatctacattaggtatttctcctaacgttatccctctccttgcctcccacctcccgacaggccctggtgtgtgatattcccttccctgtgcccatatgttctcattggtcaactcccatttatgagtgagaacatgcggtgt

ttggttttctgttcttgtgttagtttgcggagaatgatggtttccagcttcatccatgtccctgcaaaggacatgaactcattcttttttatggctgcaagaaatgcaaatcaaaaccacaatgagatgccatctcacaccagttagaatggcaatcattaaaaagtcaggaaacaatagatgctggagaggatgtggagaaataggaatgcttttacactgttggtgggagcgtacattagttcaaccattgtggaagacagtgtggtgtttcctcaaggatctaaaactagaaataccatttgacccagcaatcccattactgggtatatacccaaacgattgtaagtcattctactacaaagacacatgcacaggtatgtttattgcagcactattcacaatagggaagacttggaaccaacccaaatgcccgtcaatgttagactagataaaatgtggcacatagacCTGGTCTTAAAATCAAGAACAGAGATTGTTACTTTTACATCCATTCCTAATTGATAAACCATTCAGTTATACCACATCTTAGCTTCTGGACTACAATGACCATATTTGGGGttttctttctaatttcattataggttcagagggtacatgtgcaggtttgagacaaaggtatattgcatgatactaaggtttggagtacaaatgattccacctcccaggtagcaagaataatacccaatatgtagtttttcaactctttcccctcttcctccatcctccctctgctactctgtggtgtctgtttttctcatctttatgtccatgtgtactcgatgtttagctcccccttgttaggtgagaacatgtggtatttggttttctgtttcagtgttaattcacttaggataatggcctccaactgcattcatgctgctgcaaaggatgtgactttcttcttattagctgcatatattttgtggtggatttgtaccacatttactttatctagtccaaagttg

ttgggcacccaggtggattccatgtctttgctattgtgaatagcactgggacaacccatacaagttcatgtgtctttttggtaaaacaatgtattttcctttgggcatatatgcggtgatggaattgctggatcgagtggtagtttaactcttagttctttgagaaatccccagactgttctccacagtggctggactaagttgcattcccaccagcagtgtagaagtgttccccattctctgtagcctcaccagcacatgttAAACTATCTttaaatatatgaaaaaaatgttcaagtctctcagattaagatgcatgcaaagtaaaatgatacttaaatatcagttctaacctataaaatatcaaatatctgacctcaatatttgataatccaacctgttgatgaagctgtagagagaggcaccctTtttttttttttt-----aattatactttaagttttagggtacatgtgcaccttgtgcaggttagttacatatgtatacatgtgccatgctggtgcgctgaacccactaactcgtcatctagcattaggtatatctcccaatgctatccctcccccctccccccaccccacaacagtccccagagtgtgatattccccttcctgtgtccatgtgatctcattgttcacttcccacctatgagtgagaatatgcggtgtttggttttttgttcttgcgatagtttactgagaatgatgatttccagtttcatccatgtccctacaaaggacatgaactcatcattttttatggctgcatagtattccatggtgtatatgtgccacattttcttaatccagtctatcattgttggacatttgggttggttccaagtctttgctattgtgaataatgccgcaataaacatacgtgtgcatgtgtctttatagcagcatgatttatagtcctttgggtatatacccagtaatgggatggctgggtcaaatggtatttccagttcg

agatccctgaggaatcgccacactgacttccacaatggttgaactagtttacagtcccaccaacagtgtaaaagtgttcctatttctccacatcctctccagcacctgttgtttcctgactttttaatgattgccattctaactggtgtgagatgatatctcattgtggttttgatttgcatttctctgatggccagtgatgatgagcattttttcatgtgttttttggctgcatagatgtcttcttttgagaagtgtctgttcatgtccttcgcccacttgttgatggggttgtttgtttttttcttgtaaatttgtttgagttcattgtagattctggatattagccctttgtcagatgagtaggttgcaaaaattttctcccattttctgggttgcctgttcactctgatggtagtttcttttgctgtgcagaagctctttagtttaattagatcccatttgtcaattttgtcttttgttgccattgcttttgTCccaccgatcccacagaaatacaaactaccatcagagaatactacaaacacctctacgcaaataaactagaaaatctagaagaaatgga

+s panTro2.chrUn 9723596 8444 +  58616431
atattattatataaaatatgtac--tatatattatataaatatatttatatattatataaatatatatattatatataATTCTAATGGTTGAATTCCAAGAATAATCTATGGCATGAAAGATTTTACCTGTCAACAGTGGCTGGCTCTTCATTGTTGCTACAATGAGTGTGTAAGATTCTGAAGAACTCCTTTAATAAGCCTAAACTTAATGTTCAACTTAGAATAAATACAATTCTTCTAAATTTTTTTGAATAATTTTTGAAAAGTCAGAAATGAGCTTTGAAAGAATTATGGTGGTGAAGGATCCCCTCAGCAGCACAAATTCAGGAGAGAGATGTCTTAACTACGTTAGCAAGAAATTCCTTTTGCTGAAGAATAGCATTCCTGAATTCTTACTAACAACCATGATAGAAAGTCTTTTGCTACAGATGAGAACCCTCGGGTCAACCTCATCCTTGGCATATTTCATGTGAAGATATAACTTCAAGATTGTCCTTGCCTATCAATGAAATGAATTAATTTTATGTCAATGCATATTTAAGGTCTATTCTAAATTGCACACTTTGATTCAAAAGAAACAGTCCAACCAACCAGTCAGGACAGAAATTATCTCACAATAAAAATCCTATCATTTGTACTGTCAATGATTAGTATGATTATATTTATTACCGTGCTAAGCAGAAGAGAACTGAAGTGAATGTTCATGATTTATTCCACTATTAGACTTCTCTTTATTCTTAAAAATATTTAAGATCACTAAATTTTTATAGGACTTTAAAAACAGTAATGTGCTGCTT-GAGTGTGTAGGACTAAGAAATGGGATTCAGAGTAGTAAAGAGAAAAGTGGAATTTCCAAGCACTATGAATTACTGTTCTTTAAAAAACAGCAAAAAACAAATAACAGTATTCCTCCAAAAAAGATGGCAAGTGTAAACTCTATACCTTC

ATGTCTCCCGTGGAATGTTAGTGATCAATTTCCACTTCTCTCTTTTACATCTTACTTGCCCATTAACTCTTATACCTAATCCAAAGATTGTTAATATGGCTATGCCTCACTTTCAGGACACCTTTTATTTGTTACTTCTCTTCACTGCAAAACTTCTTGAAACAGTACTTATTTTCTCTCCTCCATACACAATTGAAATGGCTCTCAACTCATGCCCAGAAGTCAGTGTTCAGTCTCTCATCTGGCAGATAGCAACTTACAAAGATGCCCCAACAATACCTCCTTGTGTCTAGACAGTCATCATTATCCTTTACCTTTTTCTGTATTTATTTCTGCTCCTAAAAGGGATCTCTATGTAAAGTATTGTTATACTAGTGCTTGTTATAATTATTATCAGAGTTAAAGCCATCACAATGTTCCCAATTACTTAAAGACATTGGAATAACATTTTTTTTATTTTCCACATCTTGCCAAAAAATATTTTGTTATCAGTACCTTaataatggctattatatattgaccattactatttgctagaaaatttatatacctggtcgtatccaatcctcacagaacttctataaagttgtgctattatcatctatattttccagatgtggccataagactgaaatcacttaggtgacttgtctaaggtcattcagatacatagtagataacccaggatttgaacacaggcctcctagcacacaagctcatatcttaactactttaatacgttgctcGATGGGATCTTACAGGTCTTCATTCACCCCTTTCCTGCTCACACAACCACAACCTGCAGTTATTACCTATTGTTAGGCTTAAAATAATTACTTGGCTTCATTTCCAAGCTCCCTCCCTTCCAATTCACATTGAGTCCAGAGCTAAATTAAACAATCATTCAAAATTTTTCAGTAGTTCTTGTCTCTATAATAAAACAGAAATGCTTTAGAAAGCATTCCAAAATCTCTTACCAGTTTTATCTC

CTATGAAAATCCTTCACactttgtctcatttaaaatttattgcattttcctcactttttctcacttcacttttgaattccctattcttttatcctctgttaatttttaagtattatatttgtgatattattttttctttttttctattttttatctttcatttcattttggcctatttttttctcttAAGAACTTTAATATCACCAAATAACATGTGTGCTACAAACTGTTTTGTAGTTCAAAGAAAAAGGAGAAAAACATAGAGTTATGGCATAGACTTAATCTGGCAGAGAGACAAGCATAAATAATGGTATTTTATATTAGGAATAAACCTAACATTAATGGAGACACTGAGAAGCCGAGATAACTGAATTATAAGGCATAGCCAGGGAAGTAGTGCGAGATAAAATTATGATCTTTGGTTGTTGAATTCTGAATGTCTTTAAGTAATAGATTATAGAAAGTCACTGTAAGAGTGAGCAGAATGATATAAAATGAGGCTTTGAATTTGAATATAATAATTCTGACTTCCTTCTCCTTCTCTTCTTCAAGGTAACTGCAGAGGCTATTTCCTGGAATGAATCAACGAGTGAAACGAATAACTCTATGGTGACTGAATTCATTTTTCTGGGTCTCTCTGATTCTCAGGAACTCCAGACCTTCCTATT-ATGTTGTTTTTTGTATTCTATGGAGGAATCGTGTTTGGAAACCTTCTTATTGTCAGAATAGTGGTATCTGACTCCCACCTTCACTCTCCCATGTACTTCCTGCTAGCCAACCTCTCACTCATTGATCTGTCTCTGTGTTCAGTCACAGCCCCCAAGATGATTACTGACTTTTTCAGCCAGCGCAAAGTCATCTCTTTCAAGGGCTGCCTTGTTCAGATATTTCTCCTTCACTTCTTTGGTGGGAGTGAGATGGTGATCCTCATAGCCATGGGCTTTGACAGATATATAGCAATATGCAAACCCCTACACTACACTACAAT

TATGTGTGGCAACGCATGTGTCGGCATTATGGCTGTCGCATGGGGAATTGGCTTTCTCCATTCGGTGAGCCAGTTGGCCTTTGCCGTGCACTTACCCTTCTGTGGTCCCAATGAGGTCGATAGTTTTTATTGTGACCTTCCTAGGGTAATCAAACTTGCCTGTACAGATACCTACAGGCTAGATATTATGGTCATTGCTAACAGTGGTGTGCTCACTGTGTGTTCTTTTGTTCTTCTAATCATCTCATACACTATCATCCTAATGACCATCCAGCATCGCCCTTTAGATAAGTCGTCCAAAGCTCTGTCCACTTTGACTGCTCACATTACAGTAGTTCTTTTGTTCTTTGGACCATGTGTCTTTATTTATGCCTGGCCATTCCCCATCAAGTCATTAGATAAATTCCTTGCTGTATTTTATTCTGTGATCACCCCTCTCTTGAACCCAATTATATACACACTGAGGAACAAAGACATGAAGACGGCAATAAGACGGCTGAGAAAATGGGATGCACATTCTAGTGTAAAGTTTTAGATCTTATATAACTGTGAGATTAATCTCAGATAATGACACAAAATATAGTGAAGTTGGTAAGTTATTTAGTAAAGCTCATGAAAATTGTGCCTTCCATTCCCATATAATTTAGTAATTGTCTAGGAACTTCCACATACATTGCCTCAATTTATCTTTCAACAACTTGTGTGTTATATTTTGGAATACAGATACAAAGTTATTATGCTTTCAAAATATTCTTTTGCTAATTCTTGGAACAAAGAAAGGCATAAATATATTAGTATTTGTGTACACCTGTTCCTTCCTGTGTGATCCTAAGTTTAGTAGAAGAAAGGAGAGAAAATATAGCCTAGCttataaa-ttaaaaaaaaatttatttGGTCCATTTTGTGAAAAACATAAAAAAAGAACTGTCACATCTTAATTTAAAAAATACATGCTTAGTGGTAAGGAGATATATGTCAACTTTTAAGA

GGTTGAAAAACAAACGCCTCCTATTATAAGTTTATACTTCACCTCCCACCACTATAACAACCCAGAATCCATGAGGGCATTATCAGGAGTGAGTGGAAGAGTAAGTTTGCCAATGTGAAATGTGCCTTCTAGGTCCTAGACATCTGTGGTATAACTGCTCATAAGCAGTAGAAAGAATTTAGAGGGATCCAGGCTCTCATCATGTTGGCACAAAGTATATTACTTGGATCCATCTATGTCATTTTCCATGGTTAATGTTTaaaagcacaggctttaaagtaaaaaacaaagagctggattcaactctactgactcttattaatcatgattttggacacattatgtagctttcatgagctttagtttctacatttataaacaggagattatacctattatgcatggttattatgaaggaaaatgacaaaatagatataaatcaaatagcccactttgagacatattaagcatgaataaacattagatactattaAAATCCTATATATTAACAAAGCCAAAAGTTTCAAACTTTACTTTTTCCCAACATTCTTGTGAAATATGACACATCCCAATCTTAACAGATGCTCACTTGGGATACTGTACTTGTGAGTGGAAGTGTGTATATTTGTGTGCAAGTGTGTACTCATACACTTCCACCTTACCACCCTAGAAAGGCATGATGAAAATTTAAGATAGAAGGAAAATATAAATTG-AAAAAAAAAACCTTAACAAATGATTCTGACAAATATCTTCTCTTTCCAGGGAGAATCACTGAGCCAGAATAAAATTGAACACTAAATATTCTAAGAAAAAAGGAATCTAGTTTGTCAAAATGTGACTTGAATTAATAGATAAGGAGAGTCAGATGATAAGAGGGTCAAAATTATGTTTATCTTAGGAAAAGTAGAATAGAAAATTTATAAGCAGATTAAAAACACATAATAAAAGTAGTAAATAATAATGACAGTATCTCAAATcagtgcagggg

ggaaaggcctactaatgtgatggtgggataattggatagcaatatgggaaaagatatatttaatttatttgctacaccaaatgccaggacaatctctaagtgaattcaagacataactcttttttcaaaaaaactatgcaaatattaaaagaaaacaagttaatgtttttataatctatgaatatggtaaagatGGATAACATTGACTATCAAATTAATTTTTAATGCGTAATAAAACTATGAGAAAATTTAAAAGTGAGAAGAAACTACTTATAACTCACATAATAGActagtacttctaacacatagggaacttctaaaacaaaacccaaaatattaataggaaaatgggcaaaacagttaaacttacagttcataCATAAGGAGAATCAGTC--TTTTTTTTTTTTTACAGTTGTAGGCAAAAAACTTTTATTTTTCATTTATTTGTAAAATTTACCCCTAATTTATTCATAATTCATTTAACTGCTAAGGGCATTAATGTGTACAACGCCATGGGAGGAACCAGTATATTCAGAATTTCTCCTGAAATTTGACCAGAAGTTATGGGCATCCCTCCCCTGGGAAGGAGGCAGGCAGAAAAGTTTGGAATCCATGTAGTAAAATATGTTACTCTTTtatatatatacatatatgtgtgtatatgtgtatatatatatacacacacacatatacatacatacatacatacatacatacatacatatTATCTGAATTAGGCCTGGTCttttttaatactttaagttctgggatacatgtgcagaatgtacaggtttgttatacaggtatacacgtgccatggttgtttgctgcacccatcaactcatcatctacattaggtatttctcctaacgttatccctctccttgcctcccaccccccgacaggccctggtgtgtgatattcccttccctgtgcccatatgttctcattggtcaactcccacttatgagtgagaacatgcagtgt

ttggttttctgttcttgtgttagtttgcggagaatgatggtttccagcttcatccatgtccctgcaaaggacatgaactcattcttttttatggctgcaagaaatgcaaatcaaaaccacaatgagatgccatctcacaccagttagaatggcaatcattaaaaagtcaggaaacaatagatgctggagaggatgtggagaaataggaatgcttttacactgttggtgggagcgtacattagttcaaccattgtggaagacagtgtggtgtttcctcaaggatctaaaactagaaataccatttgacccagcaatcccattactgggtatatacccaaacgattgtaagtcattctactataaagacacatgcacaggtatgtttattgcagcactattcacagtagggaagacttcgaaccaacccaaatgcccatcaatgttagactagataaaatgtggcacatagacCTGGTCTTAAAATCAAGAACAGAGATTGTTACTTTTACTTCCATTCCTAATTGATAAACCATTCAGTTATACCACATCTTAGCTTCTGGACTACAATGACCATATTTGGGGttttctttctaatttcattataggttcagagggtacatgtgcaggtttgagacaaaggtatattgcatgatactaaggtttggagtacaaatgattccacctcccaggtagcaagaataatacctaatatgtagtttttcaactctttcccctcttcctccatcctccctctgctgctctgtggtgtctgtttttctcatctttatgtccatgtgtactcgatgtttagctcccccttg-taggtgagaacatgtggtatttggttttctgtttcagtgttaattcagttaggataatggcctccatctgcattcatgctgctgcaaaggatgtgactttcttcttattagctgcatatattttgtggtggatttgtaccacatttactttatctagtccaaagttg

ttgggcacccaggtggattccatgtctttgctattgtgaatagcactgggacaacccatacaagttcatgtgtctttttggtaaaacaacgtattttcctttgggcatatatgcggtgatggaattgctggatcgagtggtagtttaactcttagttctttgagaaatccccagactgttctccacagtggctgaactaagttgcattcccatcagcagtgtagaagtgttccccattctctgtagcctcaccagcacctgttAAACTATCTttaaatatatgaaaaaaa-gttcaagtctctcagattaagatgcatgcaaattaaaatgatacttaaatatcagttctaacctataaaatatcaaatatctgaccccaatatttgataatccaacctgttgatgaagctgtggagagaggcactctTTTTtttttttttttttaaattatactttaagatttagggtacatgtgcaccttgtgcaggttagttacatatgtatatatgtgccatgctggtgcgctgaacccactaactcgtcatctagcattaggtatatctcccgatgctatccctcacccctccccccaccccacaacagtccccagagtgtgatattccccttcctgtgtccatgtgatctcattgttcaattcctacctatgagtgagaatatgcggtgtttggttttttgttcttgtgatagtttactgagaatgatgatttccaatttcatccatgtccctacaaaggacatgaactcatcctttttaatggctgcatagtatgccatggtgtatatgtgccacattttcttaatccagtctatcattgttggacatttgggttggttccaagtctttgctattgtgaataatgccgcaataaacatacgtgtgcatgtgtctttatagcagcatgatttatagtcctttgggtatatacccagtaatgggatggctgggtcaaatggtatttccagttct

agatccctgaggaatcgccacactgacttccacaatggttgaactagtttacagtcccaccaacagtgtaaaagtgttcctatttctccacatcctctccagcacctgttgtttcctgactttttaatgattgccattctaactggtgtgagatggtatctcattgtggttttgatttgcatttctctgatggccagtgatgatgagcattttttcatgtgttttttggctgcataaatgtcttcttttgagaagtgtctgttcatgtccttcgcccactttttgatggggttgtttgtttttttcttgtaaatttgttttagttcattgtagattctggatattagccctttgtcagatgagtaggttgcgaaaattttctcccattttgtaggttgcctgttcactctgatggtagtttcttttgctgtgcagaagctctttagtttaattagatcccatttgtcaattttgtcttttgttgccatttgctttGTCccaccgatcccacagaaatac-aactaccatcagagaatactacaaacacctctacacaaat-aactag-aaatctagaagaaatgga

+
+a score=362262
+s hg18.chr1       66429 4062 + 247249719
aaaaatcaattcaagatggattaaagacttaaacgttagacctcaaaccataaaaaccctagaagaaaacctaggctttaccattcaggacataggcatgggcaaggacttcatgtctaaaacaccgagagaggcactcttatgcattgttggtgagaatacaaaatggtacaactcttggcaatatcttaaaaaatttacatggtactgacttttggtctagcaatcctacttctatcctaaagatatattggcaaaaatacaaaataattgatgcactcaagtctattcattgaagcattgtttttcatagtaaa---cggaaagtaggccgggcgtggtggctcatgcctgtgatcccagcattttgggaggctgaggcgggcagatcacttgaggccaggaattcaagaccagcgtggctaacatggcgaaaccccatctctaccaaaaatacaaaaattagctgggcgtggtggtgcacacttgtaattccagctacttgagaggctgaggtgggaggatcgcttgaacctgggaggcagaagtttcagtgagcccagaacgtgcctctgcactccagccaggatgacagagcaagactccatctcaaaaaaaaaaaaaaaaaaaaaggaaaataaccaaatgacaattagtgagtactacttgcaaaacttgtacgcaatagagtatgaagcaactataaaatgagagagaaatatctccaaatactactctaaagtaatctacaaggtataccttaactgaaaagaaacaaaaaagtgacaccagaatgctatttttatgttaaaacagggataaataCATTGGATTTACATGCatatataagtatatattttataaatgtttaaataaGCATACTTAAAATGGCAAAAACGTAATACATATATAATTTTCTTATGGCAGGAGGAGGAAACAGGGCAAGGC

ACAGGGATAAAAGTTATTCTGAATACATCTTATTTTATATTTTTGACTTTGAAATCCTGTAGCTGTTTTATGTAATATAAAAATGTAATTAAATTAACAGAAAAAAATTACAACTGCTAAAAATCAAGATCTGGCATTTTAATTAAGTTATAAAACATCGGAGAAAAGAATTGTTTCATGGGACACTAACATACAGACAAATTCATTTGGAACCCAATGAATTAATGGGCCTAAGATAACAACCAATAGAAGCTAAAATGACGAATAACTGTTTCAGAAGAAAACATATATGGAATGAATCAGCTGAAAATACCTGAACCTACTGATCAATTTTTATATCACATGAAGTGAATACACATAAAGTATAATATGGAGCACATAGAACCAACTAGAAATGAGCCTAATTGTTAAATATTCTCTATTTTATGAcaatatacaggaaatatgtcgaagagagaaacatgcaagaacaccgtagggtttaataagataatcacaaggtatggaatattcaacaggatgagtatcctggattattcagcaaatacacagagctaaaaagcaggagaaaggaattcatatatatttttaaaaactaaaaagatatattagctgatgcaactttgaaacttctttagatcctgattcaaatagagcaaatttaacaaatatatttgaaactattaaaataatttaaaaatgaccaagtatttgattatatcaaatatagacaataataaccttgaatgtacatggattaaatgtccacttaGGggctgggtgtggtggctcatgactataattccagcactttgggaggccaaggcagaaggattgcttgaggtcagaggttcaagtgcagcctggtcaacacagtgaaaccctatctctacaaaaaacaaacaaaaataaaaaaTT-AACtaattttaaaaaatatatatttCTTCtaaattctccacctgaaagatatagactgactgaatgaatt

ttaactatgatctgactatgtgcttccctgaacaaatgcactttacctgt-aaaacacatattaactaaaagaaaagagatggaaaaaggtattccatgaacagaaaccaaaatgagtaggagtagctatacttctgtcagacaaaacagactttaagtcaaaactagctttagaaaaaagacaaaaatgcttattatacaacgataaaggaatcaatccagaaagaggatataacaattttaaatatatatgcagccaacactggagcagccagattcataaagcaaatactactagatcaaaacagagaggtagactcaaatataataatagtgaaggacttcaacaccccactttcagcattaaacagatcatctaataagaaaaccaatctcgcagccctcaccctggagagtccacaggtaccaggggttggtctgaacccccagcacagagcacctgcctcacagaagagtggctgcatttttcttcctgcagttttcagtcctcacttctccttaccaagcagggccacctggcctgggactccggtacaactaccctgccccccacctgacgacttcaataagaagtagcccagcatttctccaaggaggaaataccagagtcaattcacaaccactgcaattgcagtggtaccaccataacagcccttgggctgcagaaggaactaagagtctagtcactacagtggcaccttcagcacaccacagccaccatacagagaggaatccagccccctcccctgggaacccccaccacccactccaccaggcacagcacccagctcataactgcagatcagttgccccacccacagctgagcttacctactggcagtggcccagactttccctagggagaggctcccagaggcaaacggcagcctctctgcccgtgtcacagcagcagttctatccatgctgtcctcaggcttggaaagaaacaaagcgcctgaaggctgcac

ctgaacttacagcatgccacagttcccatatggagaggagaccagtctctcctcccagtgagccctaaaccccctgatccccaacaagcagagccctaacctcacaccagcagtacagctgccccatcccccaggctgaacattcccagtaatagcagctccacctggagatggaacccccagggtcaactaaaagcccctctgccactgcctctacagtggtactacccctgctacccttgaactaacaaaggagcaaagaccccagtgctttatccacacctccaacaagctgcagtcgaccacaaagaagaaacacgtctgtctcccatgggtcctacccacaccccctgctgttcaccatggatgatagagtcaacagtgtgaaaacgaccatactgccaaaagcaacctacaaattcaatgcaattcccatcaaaataccaccatcattcttcacagaactagaaaaaacaaggctaaaattcacatggaaccaaaaaagagcccacatagccaaagcaagactaagcaaaaagaataaatctagaggcatcacattactcgacttcaaactatactataaggccatagtcaccaaaacagcatggtactggtataaaaataggcatatagaccaatggaatagaataaagaacccagaaataaagccaaatactttcagccaactgatctttgacaaagcaagcaaaaacataaagtggggaaaggacaccctattcaacaaatggtgctggtataattggcaagccacatgtagaagaatgcaactggatcctcatctctcaccttataaacaaatcaactcaagatggttcacagacttaaatctaagacctgaaaccataaaaattctagaagataagattggaaaaacccttctagacattggcttaggcaaagacttcacaatcaagaacccaaaagcaaacacaacaaaacaaagataaatagatgggacttaatta

aactgaaagccttctgcacatcaaaataaataatcagcagagtaaacagacaacccacagagtgggagaaaatcttcacaaactatgcatccaacagaggactaatatccagaatctacaaagaattggaacaaatcagcaagaaaaaaaac

+s panTro2.chrUn 9734145 4062 +  58616431
aaaaatcaattcgagagggattaaagaattaaacattggacttaaaaccataaaaaccctagaagaaaacctaggcattaccattcaggacataggcatgggcaaggacttcatgtttaaaacactgagagaggcccttttatgcattgttggtgagaatacaaaatggtacaactcttggcaatattttaaaaaatttacatggtactgacttttggtctagcaatcctacttttatcctaaagatatactggcaaaaatacaaaataattgatgcacacaagtttattcattgaagcattgtttttcatagtaaagaatggaaagtaggccgggtgtggtggctcatgcctgtaatcccagcattttgggaggctgaggtgggcagatcacttgaggccaggaattcaagaccagcgtggctaacatggcgaaaccccatctttaccaaaaatacaaaaattagccaggcatggtggtgcacacttgtaattccagctacttgagaggctgaggcgggaggatcgcttgaacctgggaggcagaggtttcagtgagcccagaacatgcctttgcactccagccaggatgacagagcaagactccatctcaagaaaaaaaaaaaaaaaaa-ggaaattaaccaaatgacaagtagtaagtactacttgcaaaacttgtacgcaatagagtatgaagcaaccataaaatgagtgagaaatatctccaaatactactctaaagtaatctacaaggtataccttaactgaaaagaaacaaaaaagtgacaccagaatgttattttt--gttaaaacagggataaataCACTGGATTTACATGCatatataagtatatattttataaatatttaaataaGCATACTTAAAATGGCAAAAACATAATACATATATAATTTTCTTATGGCAggaggaggaaacagggcaaggc

acagggataaaagttattctgaatacatcttattttatatttttgactttgaaatcatgtagctgttttacataatttaaaaatgtaattaaagtaacagaaaaaaattacaactgccaaaaATCAAGATCTGGCATTTTAATTAAGTTATAAAACATCGGAGAAAAGAATTGTTTCATGGGACACTAACATACAGTCAAATTCATTTGGAACCCAATGAATTAATGGGCCTAAGATAACAACCAGCAGAAGCTAAAATGACGAGTAACTGTTTCAGAAGAAAACATATATGGAATGAATCAGCTGAAAATACCTGAACCTACTGATCAATTTTTATATCACATGAAGTGAATACACATAAAGTATAATATGGAGCACATAGAACCAACTAGAAATGAGCCTAATTGGTAAAGATTCTCTATTTTATGAcaatatacaggaaatatgtcgaagagagaaacatgcaagaacaccgtaggatttaataagataatcacaaggtatggaatattcaacaggatgaatatcctggattattcagcaaatacacagagcgaaaaagcaggagaaaggaattcatatatatttttaaaaactaaaaagatatattagccaatgcaactttgaaacttctttagatcctgattcaaatagagcaaatttaacaaatatatttgaaactattaaaataattttaaaatgactaagtatttgattatatcaaatatagacaataataaccttgaatgtacatggattaaatgtccacttaGGggctgggtgtggtggctcatgactataattccagcactttgggaggccaaggcagaaggattgcttgaggtcagaggttcaagtgcagcctggtcaacacagtgagaccctatctctacaaaaaacaaacaaaaataaaaaaTTAAACtaatttttaaaaaaatatatttCTTCtaaattctccacctgaaagatatagactgactgaatgaatt

ttaactatgacctgactatgtgcttccctgaacaaatgcactttacctgtaaaaacacatattaactaaaagaaaagagatggaaaaaggtattccatgaacagaaaccaaaatgagtagaagtagctatacttatgtcagacaaaacagactttaagtcaaaactagctttagaaaaaagacaaaaatgcttattatacaatgataaaggaatcaatccagaaagaggatataacaattttaaatatatatgcagccaacactggtgcagccagattcataaagcaaatactactagatcaaaacagagaggtagactcaaatataataatagtgaaggacttcaacaccccactttcagcattaaacagatcatctaataagaaaaccaatctcgcagccctcaccctggagagtccacagggaccaggggttggtctgaacccccagcacagagcacctgcctcacggaagagtggctgcatttttcttcatgcagttttccgtcctcacttctccttaccaagcagggccgcctggcctgggactcctgtacaactaccctgcccctcacctgaccacttcaataagaagtagcccagcatttctccaaggaggaaataccagagtcaattcacaaccactgcaattgcagtggtaccaccataacagcccttgggctgcagaaggaactaagagtctagtcactacagtggcaccttcagcacaccacagccaccatacagagaggagtccacccccctcccctgggaacccccaccacccactccaccaggcacagcccccagctcataactacagatcagttgccccacccacagctgagcttacctactggcagtggcccagactttccccagggagaggctcccagaggcaaacggcagcctctctgcccctgtcacagcagcagttctatccatgctgtcctcaggcttggaaagaaacaaagcgcctgaaggctgcat

ctgaacttacagcatgccacagttcccatatggagaggagaccagtctctcctcccagtgagccctaaaccccctgatccccaacaagcagagccctaacctcacaccagcagtacagctgccccatcccccaggctgaacattcccagtaatagcagctccacctggagatggagcccccagggtcaaccaaaagcccctctgccactgcctctacggtggtactactcctgctacccttgaactaacaaaggagcaaagaccccagtgctctatccacacctccaacaagcttcagtcgaccacaaagaaaaaaccagtctgtctcccatgggtcctacccacaccccctgctgttcaccatggatgatagagtcaacagtgtgaaaacaaccatactgccaaaagcaacctacaaattcaatgcaattccaatcaaaataccaccatcattcttcacagaactagaaaaaacaatgctaaaattcacatggaaacataaaagagcccacatagccaaagcaagacttagcaaaaagaacaaatctagaggcatcacattacttgacttcaaactatactataaggccatagtcaccaaaacagcatggtactggtataaaaataggcatatagaccaatggaatagaatagagaacccagaaataaagccaaatacttacagccaacttatctttgacaaagc-agcaaaaacataaagtggggaaaggacaccctattcaac-aatggtgctggtataattggcaagccacatgtagaagaatgcaactggatcctcatctctcaccttataaaaaaatcaactcaagatggttcacagacttaaatctaagacctgaaaccataaaaattcttgaagataacattggaaaaacccttctagacattggcttaggcaaagacttcacaatcaagaacccaaaagcaaacacaacaaaacaaagataaatagatggcacttaatta

aactgaaaagcttctgcacagcaaaataaataatcagcagagtaaacagacaacccacagagtgggaggaaatcttcacaaaccatgcatccaacagaggactaatatccagaatctacaaagaattggaacaaatcatcaagaaaataaac

+
+a score=285297
+s hg18.chr1       70493 3253 + 247249719
aacaCAAGGATGACAGTGGAAATACAAAAACAAGACATAAATATTCTGAATAGTGATAATAAAACAGTGCATACCAGAATAcaaactgtttccaagttacaatggttcaaccatttttcagctttatggtggtgtgaaagtgatatccattcattagaaaccatgctccaggatgggcgcagtgggtcacgcctgtaatcctagcactttgggaggccgaggagggcggatcacaaggtcaagagatcaagaccatcctggccaacatggtgaaaccccgtctctcctaaaaatacaaaaattagctgggcattgtggtgcgtgcctgtaatcccagctattcgggaggctgaggcaggagaatcacttgaaccagggagtcggaggtgttgcagtgagccgagatcgtgccactgcctccagcctggcaacagagtgagactccatctcaaaaaaaagaaagaaaccctactccgaattttgaattttgatattttcctggactaccaatatgtggcacaatgctctctcacaatgttgtgcaacagcggtgagctgcagcttccagtcagctaaatgataataaaggtagataatccatcttgatatcttcctgaagaacataatgcctgcctaccatcaacaggcatcaatactttctaccagctattctcaaccctcatgatcggaagagacagagactgactgtgtcaaagtattagtcccatcattcagcaattaactttagctcaatgcttcaaaaattcttcaggccctgtgtaatttcagctacgtacattaatgatgagtacccatacaaccattctgtttcttattttcagtaccatatttaataaatatcagttattcaatactttatttagacattttgttagattattttgaccaactgaagtctaatctaaatgttctgagcatgttcaaagt

aagctaggccaacctataattttcggtgtgctaaatgcatttttaacttatgatattttcagtttacgggggtttgttgagacataacttcatcatacatcaaggagcatctgTAtatgggatatagttaaagcagtgatcagaggaaaatctatagccttaacacatttattaataaaagtgtaggaattaaattatcagctgaaaaatgtaaaaagtatctaaaagagtaagcagaaagtacaagaaagaacccaaagtagaaaaaagtgaaaattaataaaataagaagccaaaaaacagatcaaatcagtaaaccaaaaatcttgttctttaaacaaatcaacaaagttgacaaaaaaattagatcttttaatcatgaataaaaaaaagagaaagcacaaaaatgaataaggaatggtgagagaaataactattgataatcagcaaataaaaaatcattaaaaacaatgttgttcacatctatgaaaaacattgaaagctagagggaatgggtaattttctagaaaaatacaattcaccacaactgacttcaaaaaaaaaaaaaaaaAAAAAGAAGTACCGCACTTATGTGAGCAATTTCCATAGAGAAATACAGTTGTCATGGAATTATAACACACACACAAACACTAGGTTTAGATGTTTTCACAGAGAATTCCACCAAACCTTTAGAAATCAGATCGTCCAaaggcaaattaacaactctcagccatttgaggcaaaatattacaattgaggcaagatatactgtactgaaaacttgaggaaaaagcaggagagaaagttcctttgggaaattcgaatactcaaaagtgcttacatacaatgaaaaatttggaaatccataagcatggccaaggtgggacacatgctcagaaaaggcctgagaagacactaataactcacctttagtaattcctaggctcacagc---aagaaaaaatgaaggctaaggcagaattatatat

ggctccgctaagtgttgagggagccccaatacagagtcagtaagcaaagtctgggagaagtttttcata-tttttttctttcttggctccttgcagtcaaggaaatcatttttaaatcactaaatgctaaatgaacacaagctaaaggaaccgagccttcaaacatcaaatataaaaaagaatgcagatattacaaaaccagtttacaaaagttactaaacaaataaaaactacatcccacagtgggtaacaaaaataaccttgaagaagggaaaaatttggtttccagaataaacacattataatatccaaaatgtccagttttcaacaaaaattaagaagcatgcaaataaacacaaaactatggcccatttacagaagaaataaatgagactctccctgagtaag--cagatattgaaaatattagacaaaaactttatataactgtcttaaataaacttaaagagctaaagaaacccaagagaatgacatataaataaataagaaatatgaatttttttaaaggtacaaaaaaattctgaggctgaaaagtacaa----taagtaaaaagttactttttacttagggttccaatagaagatttgagcagctggaaaaaagaatcagtgaacttgatagatcaaatgaaatgattcagtctgaagagcaggaaaatgaaagaatgacaacaaaaaagaatagagcctaaagacctgtgtaacaacatcaagaatgcctacatacagaatcctggtggggagtgaggggcaggaagactatttgaagaaatgtgtttgaaagcttcccaaatttcactaaaaacaaatatatacattcaaaaagctcagtgaacttcatcaaggaaatatacaaagatattcacaccaagacacactatgtttcaaattgtcaaaaggcaaagcgaatgtttgaaagcagcaagagaaaggcaacgcgtcatttacaaaggatcctcaataagtttg

acagcagatagtgcattataagccatggatgccagaagagcttaggaaaaaggcaacgcgtcatttacaaaggatcctcagtaagtttgacagcagagagctcattataaaccatgggtgccagaagagcttaggatgacattttaaagttctgaaagaaaaaaacactgtcaaccaaaaattctataacttggaagatgccccttcaagtattaaggataaattacacattcccagattaaaaaaaagaaagagagagagagagaaagagaaagaaagaaag--agaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaagagaaagaaa

+s panTro2.chrUn 9741371 3254 +  58616431
AACACAAGGATGACAGTGGAAATATAAAAACAAGACATAAATATTCCGAATAGTGATAATAAAACAGTGCATACCAGAATAcaaactgtttccaagttacaatggttcaaccatttttcaactttatggtggtgtgaaagtgatagccattcattagaaaccatgctccaggatgggcacagtgggtcacgcctgtaatcctagcactttgggaggccgaggaaggcagatcatgaggtcgagagatcaagaccatcctggccaacatggtgaaaccccgtctctcctaaaaatataaaaattagctgggcattgtggtgcgtgcctgtaatcccagctatttgggaggctgaggcaggagaatcacttgaaccagggagttggaggtattgcagtgagccaagatagcaccactgcctctagcctggcaacagggtgagactccatctcaaaaaaaaggaagaaaccctactccgaattttgaattttgatattttcctggactaccaatatgtggcacaatgctctctcacaatcttgtgcaacagcggtgagctgcagcttccagtcagccaaatgataataaaggtagataatccatctttatatcttcctgaagaacataatgcctgcctaccatcaacaggcatcaatactttctaccagctattctcaaccctcatcatcggaagagacagacactgactgtgtcaaagcattagtcccatcattcagcaattaactttagctcaatgcttcaaaaattcttcaggccctgtgtaatttcagctacatacattaatgatgagtacccatacaaccattctatttcttattttcagtaacatatttaataaatatcagttattcaatactttatttagacattttgttagattattttgaccaactgaagtctaatctaaatgttctgagcatgttcaaagt

aagctaggccaacctataattttcggtgtgctaaatgcatttttaacttatgatattttcagtttacgggggtttgttgagacataacttcatcatacatcaaggagcatctgTAtatgggatatagttaaagcagtgatcagaggaaaatctatagccttaacacatttattaataaaagtgtaggaattaaattatcagctgaaaaatgtaaaaagtatctaaaagagtaagcagaaagtacaagaaagaacccaaagtagaaaaaagtgaaaattaataaaataagaagcc-aaaaacagatcaaatcagtaaaccaaaaatcttgttctttaaacaaatcaacaaagttgac-aaaaaattagatcttttaatcatgaataaaaaaaagagaaagcacaaaaatgaatacggaatggtgagagaaataactattgataatcaacaaataaaaaatcattaaaaacaatgttgttcacaactatgaaaaacattgaaagctagagggaatgggtaattttccagaaaaatacaattcaccaaaattgacttc-------aaaaaaaaaaaaaagaagtacagcacttatgtgagcaatttccatagagaaatacagttgtcatggaattataacacacacacaaacactaggtttagatgttttcacagagaattccaccaaacctttaGAAATCAGATcatccaaaggcaaattaacaaccctcagccatttgaggcaaaatattacaattgaggcaagatatactgtactgaaagcttgaggaaaaagcatgagagaaagttcctttgggaaattcgaatattcaaaagtgtttacatgtaatgaaaaatttggaaatccatgagcatggccaaggtgggacacatgctcagaaaaggcctgagaaaacactaataattcacctttagtaattcctaggctcacggcaaaaaaaaaaaacgagggccaaggcagaattatatat

ggcttggctaagtgttgagggagccccaatacagagtcagtaagcatagtctgggagaggtttttcatattttttttcttttttggctccttgcagtcaaggaaatcatttttaaatcactaaatgctaaatgaacacaagctaaaggaactgagccttcaaacagcaaacataaaaaagaatgcagatattaaaaaaccagtttacaaaagttactaagcaaataaaaactacatcccacagtgggtaacaaaaataaccttgaag-agggggaaatttggtttccagaataaacacattatactatccaaaatgtccagttttcaataaaaattaagaagcatgcaaataaacacaaaagtatggctcatttacagaagaaataaatgagactctccctgagtaagcacagatattggaaatattagacaaaaactttatataactgtcttaaataaacttaaagagctaaagaaacccaagagaatgacatatgaataaataggaaatgtgaattttttaaaaagtacaaaaaaattctgaggctgaaaagtacaataactaagtaaaaagtaactttttacttggggttccaatggaagatttgagcaggtggaaaaaagaatcagtgaacttgatagatcaaatgaaatgattcattctgaagagcaggaaaacgaaagaatgacaacaaaaaagaatagagcctaaagacctgtgtaacaacatcaagaatgcctacatgcagaatcctggtggggagtgaggggcaggaagactatttgaagaaatgtgtttgaaagctccccaaatttcactaaagacaaatatacacattcaaaaagctcagtgaacttcatcaaggaaatatacaaagatattcacaccaagacacactatgtttcaaactgtcaaaaggcaaagtaaatgtttgaaagcagcaagagaaaggcaatgcatcatttacaaaggatcctcaataaatttg

acagcagatagcacattataagccatggatgccagaagAGCTTaggagaaaggcaacacatcatttacaaaggatcctcagtaagtttgacagcagagagctcattataaaccatggatgccagaagagcttaggatgacattttaaagttctgaaagaaaaaaacactgtcaaccaaaaattctataacctggaatatgccccttcaagtattaaggataaattacacattcccagattaaaaaaaAAaaaga-agagagggagagagagaaataaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaagaaagaaa

+
+a score=24006
+s hg18.chr1     73836 305 + 247249719
aaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaag-aaagaaagaaagaaagaaagaa--aagcaagcaagctttaaaagttcatgtttggtaggctgtacttcaagatacacttttaaaaaaaagactccttcagatacaaactaaaaaacactagaaagtaactcaaaaccacataaagaaataactccagtaaagataactacataggtaaatataaaagcaattatcacattttttgtaagtcttttttaatattctatat--gttttaaaacaaatgtgtaaaataatgactata

+s panTro2.chr15 87759 308 - 100063422
aaaagaaagaaagaaagaaagaaaagaa--aagaaaaaaggaaaggaaaggaagaaaaagaaaagcaagcaagcaagcaagctttaaaagttcatgtttggtaggatgtacttcaagatacactttaaaaaaaaagactcctgcagatacaaactacaaaacactagaaagtaactcaaaaccacataaagaaataactccagtaaaggtaactacataggtaaatataaaagcaattatcacattttttgtaagtcttttttaatattctatataagttttaaaacaaatgcgtaaaataatgactata

+
+a score=250753
+s hg18.chr1       74141 2820 + 247249719
aatctatgttaatgaagcatgatgtatacagatgtggtttgtgaaattaccaacataaagaaattcataggaaactaaataataatagagattttgtata-ctattgaagtt--gtttcaatttactctaaattgttccaaattaagaatgttaattgtaaatccccatggtaacc-actaagttaatatcttttgaaaatacagaaaaggaaagcacagggtaaacacagtgatatgctacaaaatagcaactaaacacaaaagaaggcgataattgaggaaattaggaacaaaggaggtataagacatacagaaaacaaaagcaaaatggtaggagtaagcccctctttatcagtaattacattaaatacaaatgaattaaactctccaatccaaagaaagagattaacagaatggattttttaaaaatgatccaactatattgtccacaagatactcactttagatcaaaatacacaatgagttgaaatgaaaggatgggagaaaatattccatgtaagtaataaccaaaggagatctgaggcaaatatacttatatcagacaaaatagactttaagtcaaaaactgttacaaaatacaaagaacagtatatattgatttcaaaattaattaagaagatataacaattataaatatatgtacaccaactaacagggctccaaaatatataatgtaaccattgagagaattaaagggagagacagacaattccacgaaaattgttgggcatttgaaaacccaactttaaataaaagataaaacatctagagcaaatatcaagggaggaattagaggatttgaataaaactataagcaataactatagataacacttctctcaaaaactgcagagtacacattcttctcaagtgaacatggaacattctccagcacagatgatatgttaggccataagataagctca

ataaacttaaaaagattgaaatcatgcaaagtatcttcactggccacaatggaatgaaataagatatcaataacaaaagaaaaactagaaaatttacaaatatttggaaattaaacaacacagtatttaccaaccaatgaatcaaagaacaaatcatgagggaaattagaaaatgtttagagacgattgaaaacaaatatataacaagatgggtgtgatatatcaaaagcagtgctcagagttgtaacacctacattttaaaaaagaaacatgtcaaatcaataaccaaactttactcaataaaccgtaaaaggaagagcaaacaaaatccagagctagcagaaggaaggaaatgaagattagagcagagataaatgaaattgagaattaaaaaattatacagagatcaacaaaattaaaagttggttcttttaaaatatcaataaaattaatatacttttacatagactaagcaaaacatctctattcagctgactttttttacaagggagccaacattattcagtggggaataatagctttttcaacaaaaagtgctgggaatactgaatattcatatgcaaaaaaaatgaagctggacccctacctcacattatatacaaaatctagattggatcaataatgtaaatataagagtgaaaaccatacatgcttagaagaaaacatggaaataaaacattgctgtggattggcaatgcgttcttagataatacaccaaaaatacaagcatgaaacaaacaaatGCAGCCAAAATGTACCAGAATCTGAAAACATCTATTATCTATGAAGAATTAGAGGGGAATTTGGTGAAAGAAATatgggagaatgggacattgctctgtgaatgcttttgtgcataattgtacatttttaattaagttaatcttttacactctcaaagtgtgatattaagcaagcaaagataagttattacaagactctaaaaccgaatgcaatgagaaacaagt

gaatccaaatatatttcaaatgaatgaatgacataatcaaacttaaggggaaaataataattaatctgattaatttttgactgttcttttagttcaaattgacttttgaacatacttggactacataccattgcttgaaaaaataaaatatctgcaaaaaattattaaatcttcatgataggcttttttctttttatattagtataaatataacaattctgaaacaaatgtatgtgcattgtaagattaagccaatgagtaaatattaatatatttgtattgctagaaccccagattctcactgtgaaaggacagagatacagatatggaataagacaaggaaagaagcagcccactgagttacattagaatcagtattatcaacataaaTATGCAATGTGCTCTCTCACATGCTCTTTCCTTCTCTTAAAAAAATATA--ATATGGACATATTATATATTATATGCATAGACACACGTGTGTCTATACATATCCTATCTATACATATTGAGGATTAACAGGTGCTAGTAGAAAATATTAACTTTCTTTGTATTAACAGGTGTTAGTAGAAAGTAGTAGTAGGTGCTAAGATAAAAGCCATAATTAAAcctcctggtgaatgaacacaccatcacctacaatcttaccaaaaatagaatcaagcacgtgtcctagtcaaacctctggattcaactgtcatttggataaaacgcaaaggatagtgaaaatgtcgatcttcactgagagtctaaccagcaaatttcacagtgtggacatcaagtgacaaaaatcccaaatttttcaacaaatatattgtatgggaaagaaaactttgaaaagaaacctgtatgttagaagagattttaaaaacatgacaaATGAAAAAAAA

+s panTro2.chrUn 9745125 2821 +  58616431
AATCTTTGTTAATggagcatgatgtatcaagatgtggtttgtgaatttagctacatcaagaaattcgttggcagctaggtaataatnccgattttgtataactattgaaggttggtttcaatttatgctaaattgttccaaattaagaatgttaattgtaaatccccagggtaacccactaagttaatatcttttgaaaatacagaaaaggaacgcagagggtaaacacagtgatatgctacaaaatagcaactaaacacaaaagaaggcgataattgaggaaattaggaacaaaggaggtataagacatacagaaaacaaaagcaaaatggtaggagtaagcccctctttatcagtaatgacattaaatacaaatgaattaaactctccaatccaaagaaagagattgacagaatggatttttaaaaaatgatccaactatattgtccacaagatactcactttagatcaaaatacacaatgagttgaaatgaaaggatgggagaaaatattccatgtaagtaataaccaaaggagatctgaggcaaatatacttatatcagacaaaacagactctaagtcaaaaactgttacaaaatacaaagaacagtatatattgatttcaaaattaattaagaagatataacaattataaatatatgtacaccaactaacagggctccaaaatatataatgtaaccattgagagaattaaagggagagacagacaattccacgaaaattgttgggcatttaaaaatccaactttaaataaaggataaagcatctagagcaaatatcaagggaggaattagaggatttgaataaaactataagcaataactataggtaacacttctctcaaaaactgcagaatacacattcttctcaagtaaacatggaacattctccagcatagatgatatgttaggccataagataagctca

ataaacttaaaaagattgaaatcatgcaaagtatcttcactgaccacaatggaatgaaataagatatcaatatcaaaagaaaaactagaaaatttataaatatttggaaattaaacaacacagtatttaccaaccaatgaatcaaagaacaaaccatgaggcaaattagaaaatgtttagagacgattgaaaacaaagatataacaagatgggtgtgatatatcaaaagcagtgctcagagttgtaacacctacattttaaaaaagaaacatgtcaaatcaataaccaaactttactcaataaaccataaaaggaagagcaaacaaaatccagagctagcagaaggaaggaaataaagattagagcagagataaatgaaattgagaattaaaaaattatacagagatcaacaaaactaaaagttggttcttttaaaatatcaataaaattaatatacttttacatagactaagcaaaacatctctattcagctgactttttttacaagggagccaacattattcagtggggaataatagctttttcaacaaaaagtgctgggaatactgaatattcatatgcaaaaaaaatgaagctggacccctacctcacattatatacaaaatctagattggatcaataatgtaaatataagagtgaaaaccatacatgcttagaagaaaacatggaaataaaacattgctgcagattggcaatgcgttcttagataatacaccaaaaatacaagcatgaaacaaacaaatGTAGCCAAAATGTACCAGAATCTGAAAACATGTATTATCTATGaagaattagagaggaatttggtgaaagaaatatgggagaatgggacattgctctgtgaatgcttttgtgcataattgtacatttttaattaagttaatcttttacactctcaaagtgtgatattaagcaagcaaagataagttattacaagactctaaaaccgaatgcaatgagaaacaagt

gaatccaaatatatttcaaatgaatgaatgacataatcaaacttaaggggaaaataataattaatctgattaatttttgactgttctcttatttcaaattgacttttgaacatactttgactacataccattgcttgaaaaaataaaatatctgcaaaaaactattaaatcttcatgataggcttttttctttttatattagtataaatataacaactctgaaacaaatgtatatgcattgtaagattaagccaatgagtaaatattaatatatttgtattgctagaaccccagattctcactgtgaaaggacagagatacagatatggaataagacaaggaaagaagcagcccactgagttacattagaatcagtattatccacataaaTATGCAATGTGCTCTCTCACATGCTCTTTCCTTCTCTTAAAAAAATATATAATATGTGCATAT-----ATTATATGCATAGACACACGTGTGTCTATACATATCCTATCTATACATATTGAGGATTAACAGGTGCTAGTAGAAAATATTAACTTTCTTTGTATTAACAGGTGTTAGTAGAAAGTAGTAGTAGGTGCTAAGATAAAAGCCATAATTAAAcctcctggtgaatgtacacaccatcacctacaatcctaccaaaaatagaatcaagcacgtgtcctactcaaacctctggattcaactgtcatttggataaaacgcaaaggatagtgaaaatgtcgatcttcactgagagtctaaccagcaaaattcacagtgtggacatcaagtgacaaaaatcccaaatttttcaacaaatatattgtatgggaaagaaaactttgaaaagaaacctgtatgttaaaagagattttaaaaatatgacaaATGAAAAAAAA

+
+a score=163295
+s hg18.chr1        76976 1815 + 247249719
CTTTTAAAAAAGtttgagacagggtctcactctgtcacccaggctggagtgcagtggtgtgaccatggctcactgtggcctcaacctcctggctcaagtgatcctaccacctcagtcttccatgtagctgggactacagctgcgtgccaccacatctggctcatttttttttcttttttaagtagagacggggacttgctatgttgcccaggctagtctcaaactcctaagcacaagcgatcctcccgcctcggcccctgaaagtgctgggattgcaggcatgagccaccacacccggccAAAAGTTGCTTTTGAGGAGTTATTGCTGTGTGGATGTGATATAACCCTTTCTGTCATCTCTTCACAAAACTTTCTGTAAAACATAAAAATCACCTGGACCTTCAGAGATGAGTTTGtttatttttttattttttaaaaaattGCTAATTTACAGAACATGGAGATGAGTATGTTTTGAAGGCTTGGAAGCATGCAAGTGGGAGAAGAAAGGAGTCAGCTACATTCTGGCTGTGTGCAGAGGCAGGTCACTGTGGTGGGAGTGTTCCTGTTTCATGGACTCTGCAAATCGCAATGCTTGGCATGGCCTCCCGACCCTGATGGCAGAGAAGCAAACACCAGTCGGAGAGCTGGGGTCCTCCCAGCCCTCTTGGCCCTGTGGCCAATTTTTTCTTCAATAGCCTCATAAAATCACATTATTTGAGTGCCCATGGCTCCAAAACAAGCAGGGATGCCCATGGACCCTGATTATCCATTGTCACCCTTCCCTCCAAACAGCCACCTCTCCCCTGGAGACAGCCCCATACTCCACTCAGACCTGTGCACTTTCTGGTATCCTTGTCACCTGCTTTTTATGTCTCATTTTACAAACACCAAATTGGAAGACAGCAGGAGCTGCCCCATAATACCAGTAAAGTGAGAAGCAGAGA

TAAACTAGTCCTAGACAGCCGACTCATGTTGGGGGCAGCCCACTCACAGTGGCCCTGACCCAACTCTGACTAGAGGCCACTTGctctcaacaccagggtgctcaatggcccgtcctggtactctgctcttctctctccaccttcgctttcctgcaatctatgcagcctgtgactccatccatgggctagtgacccccagaccttctcctgggaccacaggcctgtgtctctatctgctgctcaatacctcccctcgaacatccatggctaaaactgagctcctgatactctctccctacccgcttctctgtggattccccacctccgcgaaggacagcttcatcctttcagctactcaggccagaagattgaagtcatctccttctccaggaaatcgtattgagggagctacaaatatccaaaatccgatcgcttctcctccactacacccgaggcccgccacccatttttgcctgaattgctgcagcagcctcctaaccgatctctgctttcacgtgggcacctcagttttttccagaacaacaaccagagagatctgctcacacccaagtcagaccaggttactcctctgctctcatagcatttggaggaaa-----------------------------------------------------------------------------------------------acccagagtgctcgtgttggccggcagagccggcccccatctcctctgacctcctccccacctcttgccctcagcacccagagtgctcgtgacggccagcagagccagcctccatctcctctgacctcccacctctcgccctcagcaccCAGAGTGCTCGTGTTGGCCAGCAAAGCCGGCCCCCATCTCCTCTGACCTCCCACCTCTCGCCCTCTGCACCCAGAGTGCTCGTGACGGCCAGCAGAGCCGGcccc

+s panTro2.chrUn 56815378 1906 -  58616431
cTTTTAAAAAAGtttgagacagggtctcactctgtcacccaggctggagtgcagtggtgtgatcatggctcactgtagcctcaacctcctggctcaagtgatcctaccacttcagtcttccatgtagctgggactacagctgcgtgccaccacatctggctcttttttttttcttttttaagtagagatggggacgtgctatgttgcccaggctagtctcaaactcctaagcacaagcgatcctcccgcctcggcccctgaaagtgctgggattgcaggcatgagccaccacacccggccAAAAGTTGCTTTTGAGGAGTTATTGCTGTGTGGATCTGATATAACCCTTTCTGTCATCTCTTCACAAAACTTTCTGTAAAACATAAAAATCACCTGGACCTTCAGAGATGAGTTTGtttatttttttattttttaaaaaattGCTAATTCACAGAACATGGAGATGAGTATGTTTTGAAGGCTTGGAAGCATGCAAGTGAGAGAAGAAAGGAGTCAGCTACATTCCGGCTGTGTGCAGAGGCAGGTCACCGTGGTGGGAGTGTTCCTGTCTCATGGACTCTGCAAATCGCAATGCTTGGCATGGCCTCCCGACCCTGATGGCAGAGAAGCAAACACCAGTCGGAGAGCTGGGGTCTTCCCAGCCCTCTTGGCCCTGTGGCCAATTTTTTCTTCAATAGCCTCATAAAATCACATTATTTGAGTGCCCATGGCTCCAAAACAAGCAGGGATGCCCATGGACCCTGATTATCCATTGTCACCCTTCCCTCCAAACAGCCACCTCTCCCCTGGAGACAGCCCCATACTCCACTCAGACCTGTGTACTTCCTGGTATCCTTGTCACCTGCTTTTTATGCCTCATTTTACAAACACCAAATTGGAAGACAGCAGGAGCTGCCCCATAATACCAGTAAAGTGAGAAGCAGAGA

TAAATTAGTCCTAGACAACCGACTCATGTTGGGGGCAGCCCACTCACAGTGGCCCTGACCCAACTCTGACTAGAGGCCACTTGctctcaacaccagggtgctcaatggcccgtcctggtactctactcttctctctccaccttcgctttcctgcaatctatgcagcctgtgactccatccatgggctagagacccccagaccttttcctgggaccacaggcctgtgtctctatctgctgctcaacacctccccttgaacatccatggctaaaactgagctcctgacactctctccatacccgtttctctgtggattccccacctccacgaaggacagcttcatcctttcagctactcaggccagaagattgaagtcatctccttctccaggaaatcgtattgggggagctacaaatatccaaaatccgatcgcttctcctccactacacccgaggcccgccacccatttttgcctgaattgctgcagcagcctcctaaccaatctctgctttcacgtgggcacctcagttttttccagaacaacaaccagagagatctactcacacccaagtcagaccaggttactcctctgctctcatagcatttggaggaaaacccagagtgctcttgccctcagcacccagagtgctcgtgacggccagcaaagccggcccccatctcctctgacctcccacctctcgccctctgcacccagagtgctcgtgacggccagcagagccggcccccgtctcctctgacctcc----cacctctcgccctctgcacCCAGAGTGCTCGTGACGGCCAGCAAAGCCGGCCCCCGTCTCCTCTGACCTCCCACCTCTCGCCCTCAGCACCCAGAGTGCTCGTGACGGCCAGCAAAGCCGGCCCCCATCTCCTCTGACCTCCCACCTCTCGCCCTCTGCACCCAGAGTGCTCGTGACGGCCAGCAAAGCTGGcccc

+
+a score=108492
+s hg18.chr1        78793 1178 + 247249719
tctcctctgacctcccacctctctccctcagctagtcctcgaacatgtctgatgtggtcccaccttgggacccacattgctactcctctgcctgtaggggtacccacagttatccacacagttcactcctgtctttcaggtctttgtgcaaatatcaccttctcagtggagacTACaccttcaggacttaggctgtgcctggcacatagtaggtgctcagtagacactggttgtaggaaggaatCTACAGGTTGAAATAAGGAGATCATTTCCCTGAGGTTCCGAAGCTCATATTTACTCACCATTTGTTGTTTACTGCTAATATTGAGCACTATCAGTAAAATACATAAAACCCtttgccaatccaggaagtgaaaatgacactttactgttttagtttgcatttctctgcttacaaatggattacacgcattttcatgtgctgttggctacttATTCATTCAGAAAACATACTAAGTGCTGGCTCTTTTTCATGTCCTTTATCAAGTTTGGATCATGTCATTTGCTGTTTTCTTTCTGATGTAAACTCTCAAAGTTTGAAGGGTATTGTCTTTTCCTGACACATACGTTGTAAATAATTTTCTGGCTTACATTTTGACTTTTAATTTCATTCACGATGTTTTTAATGAATAATTTTAATTTTTATGAATGCAAGTTAAAATAATTCTTTCATTGTGGTTTCTGACATGTCATGCCAATAAGGGTCTTCTCCTCCAAGAGCACAGAAATATTTGCCAATACTGTCCTTAAAATCGGTCACAGTTTCATTTTTTATATATGCATTTTACTTCAATTGGGGCTTCATTTTACTG---GCCCTATTTGAAGCAAGTTTCTCAGTTAATTCTTTTCTCAAAGTGCTAAGTATGGTAGATTGCAAACATAAGTGGCCACATAATACTCCCACCTCctttgcctcctctccc

aggaggagatagcctccatctttccactccttaatctgggcttggccaagtgacttacactggccaatgggatattaacaagtctgatgtgcacagaggctgtagaatgtgcactggggcttggtctctcttgctgccctggagaccagctgccCCACGAAGGAAACAGAGCCAACCTGCTGCTTCCTGGGGGGAGACAGTCCCTCAGTCCCTCTGTCTCTGCCAATCAGTTAA

+s panTro2.chrUn 56817286 1178 -  58616431
tctcctctgacctcccacctctctccctcagctagccctccaacatgtctgatgtggtcccaccttgggacccacattgctactcctctgcctgtaggggtacccacagttatccacacagttcactcctgtctttcaggtctttgtgcaaatatcaccttctcagtggagacTACaccttcaggacttaggctgtgcctggcacatagtaggtgctcagtagacactggttgtaggaaggaatCTACAGGTTGAAATAAGGAGATCATTTCCCTGAGGTTCCGAAGCTCATATTTACTCACCATTTGTTGTTTACTGCTAATATTGAGCACTATCAGTAAAATACATAAAACCCtttgccaatccaggaagtgaaaatgacactttactgttttagtttgcatttctctgcttacaaatggattacacacattttcatgtgctgttggctacttATTCATTCAGAAAACATACTAAGTGCTGGCTCTTTTTCATGTCCTTTATCAAGTTTGGATCATGTCATTTGCTGTTTTCTTTCTGATGTAAACTCTCAAAGTTTGAAGGGTATTGTCTTTTCCTGACACATACGTTGTA---AATTTTCTGGCTTACATTTTGACTTTTAATTTCATTCACGATGTTTTTAATGAATAATTTTAATTTTTATGAATGCAAGTTAAAATAATTCTTTCATTGTGGTTTCTGACATGTCATGCAAATAAGGGTCTTCTCCTCCAAGAGCACAGAAATATTTGCCAATACTGTCCTTAAAATCGGTCACAGTTTCATTTTTTATATATGCATTTTACTTCAATTGGGGCTTCATTTTACTGAATGCCCTATTTGAAGCAAGTTTCTCAGTTAATTCTTTTCTCAAAGTGCTAAGTATGGTAGATTGCAAACATAAGTGGCCACATAATACTCCCACCTCctttacctcctctccc

aggaggagatagtctccatctttccactccttaatctgggcttggccatgtgacttacactggccaatgggatattaacaagtctgatgtgcacagaggctgtagaatgtgcactggggcttggtgtctcttgctgccctggagaccagctgccCCACGAAGGAAACAGAGCCAACCTGCTGCTTCCTGGAGGAGGACAGTCCCTCAGTCCCTCTGTCTCTGCCAACCAGTTAA

+
+a score=133824
+s hg18.chr1        79971 1468 + 247249719
CCTGCTGCTTCCTGGAGGAAGACAGTCCCTCAGTCCCTCTGTCTCTGCCAACCAGTTAACCTGCTGCTTCCTGGAGGAAGACAGTCCCTCAGTCCCTCTGTCTCTGCCAACCAGTTAACCTGCTGCTTCATGGAGGAAGACAGTCCCTCAGTCCCTCTGTCTCTGCCAACCAGTTAACCTGCTGCTTCCTGGAGGAAGACAGTCCCTCTGTCCCTCTGTCTCTGCCAACCAGTTAACCTGCTGCTTCCTGGAGGAAGACAGTCCCTCTGTCCCTCTGTCTCTGCCAACCAGTTAACCTGCTGCTTCCTGGAGGAAGACAGTCACTCTGTCTCTGCcaacccagttgaccgcagacatgcaggtctgctcaggtaagaccagcacagtccctgccctgtgagccaaaccaaatggtccagccacagaatcgtgagcaaataagtgatgcttaagtcactaagatttgggCAAAAGCTGAGCATTTATCCCAATCCCAATACTGTTTGTCCTTCTGTTTATCTGTCTGTCCTTCTCTGCTCATTTAAAATGCCCCCACTGCATCTAGTACATTTTTATAGGATCAGGGATCTGCTCTTGGATTTATGTCATGTTCCCACCTCGAGGCAGCTTTGTAAGCTTCTGAGCACTTCCCAATTCCGGGTGACTTCAGGCGCTGGGAGGCCTGTGCATCAGCTGCTGCTGTCTGTAGCTGAGTTCCTTCACCCCTCTGCTGTCCTCAGCTCCTTCGCCCCTGGGCCTCAGGAAATCAATGTCATGCTGACATCACTCTAGATCTAAAACTTGGGTTCTTGgaccaggtgcggtggctcacatctgtaatcccagcaatttgggaggccgaggcgggtggatcacaaggtcaggagatcaagacgatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaaaatt

agccgggtttggtggcaggtgcctgtagccccagctacttgggaggctgaagcaggagaatggcgtgaacctgggaggtggagctggcagtgagccaagatcacgccactgcactccagactgggagagagagcgagactttctcaaaaaa----aaaaaaaTCTTAGGTTCTTGGATGTTCGGGAAAGGGGGTTA-TTATCTAGAATCCTTGAAGCGCCCCCAAGGGCATCTTCTCAAAGTTGGATGTGTGCATTTTCCTGAGAGGAAAGCTTTCCCACATTATACAGCTTCTGAAAGGGTTGCTTGACCCACAGATGTGAAGCTGAGGCTGAAGGAGACTGATGTGGTTTCTCCTCAGTTTCTCTGTGTGGCACCAGGTGGCAGCAGAGGTCAGCAAGGCAAACCCGAGCCCAGGGATGCGGGGTGGGGGCAGGTACATCCTCTCTTGAGCTACAGCAGATTAACTCTGTTCTGTTTCATTGTGGTTGTTTAGTTTGCGTTTTTTTTTCTCCAACTTTGTGCTT

+s panTro2.chrUn 56818581 1471 -  58616431
CCTGCTGCTTCCTGGAGGAAGACAGTCCCTCTGTCCCTCTGTCTCTGCCAACCAGTTAACCTGCTGCTTCCTGGAGGAGGACAGTCCCTCAGTCCCTCTGTCTCTGCCAACCAGTTAACCTGCTGCTTCCTGGAGGAAGACAGTCCCTCAGTCCCTCTGTCTCTGCCAACCAGTTAACCTGCTGCTTCCTGG-GGAGGACAGTCCCTCTGTCCCTCTGTCTCTGCCAACCAGTTAACCTGCTGCTTCCTGGAGGAGGACAGTCCCTCTGTCCCTCTGTCTCTGCCAACCAGTTAACCTGCTGCTTCCTGGAGGAAGACAGTCACTCTGTCTCTGCcaacccagttgaccgcagacatgcaggtctgctcaggtaagaccagcacagtccctgccctgtgagccaaaccaaatggtccagccacagaatcgtgagcaaataagtgatgcttaagtcactaagatttgggCAAAAGCTGAGCATTTATCCCAATCCCAATACTGTTTGTCCTTCTGTTTATCTGTCTGTCCTTCTCTGCTCATTTAAAATGCCCCCACTGCATCTAGTATATTTTTATAGGATCAGGGATCTGCTCTTGGATTTATGTCATGTTCCCACCTCGAGGCAGCTTTGTAAGCTTCTCAGCACTTCCCAATTCCAGGTGACTTCAGGCGCTGGGAGGCCTGTGCATCAGCTGCTGCTGTCTGTAGCTGAGTTCCTTCACCCCTCTGCTGTCCTCAGCTCCTTCACACCTGGGCCTCAGGAAATCAATGTCATGCTGACATCACTCTAGATCTAAAACTTGGGTTCTTGgaccaggtgcggtggctcacacctgtaatcccagcaatttgggaggccgaggtgggtggatcacaaggtcaggagatcaagacgatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaaaatt

agccgggtgtggtggcaggtgcctgtagccccagctacttgggaggctgaggcaggagaatggcgtgaacctgggaggtgtagcttgcagtgagccaagatcatgccactgcattccagactgggagagagagcgagactttctcaaaaaaaaacaaaaaaaaCTTAGGTTCTTGGATGTTCGGGAAAGGGGGTTCTTTATCTAGGATCCTTGAAGCGCCCCCAAGGGCATCTTCTCAAAGCTGGATGTGTGCATTTTCCTGAGAGGAAAGCTTTCCCACATTATTCAGCTTCTGAAAGGGTTACTTGACCCACAGATGTGAAGCTGAGGCTGAAGGAGACTGATGTGGTTTCTCCTCAGTTTCTCTGTGTGGCACCAGGTGGCAGCAGAGGTCAGCAAGGCAAACCCGAGCCCAGGGATGCGGGGTGGGGGCAGGTACGTCCTCTCTTGAGCTACAGCAGATTAACTCTGTTCTGTTTCATTGTTGTTGTTTAGTTTGCG-TTTTGTTTCTCCAACTTCGTGCTT

+
+a score=75360
+s hg18.chr1             81439 811 + 247249719
CATCGGGAAAAGCTTTGGATCACAATTCCCAGtgctgaagaaaaggccaaactctggaaaaaatttgaatattttgagccaaatgtgaggaccacaacctgtgagaacggaaaataaatcctgggaccccagactcactaagccaaagggaaaagccaagctgggaactggcttatgcaaacctgcttcccatctggttcctaaataagatagctattacacaaagacaaaaaagctacatccctgcctctacctccatcgcatgcaaaatgtgtattcagtgaacgctgaccaaagacagaagaatgcaaccatttgcctctgatttacccacacccattttttccacttcttcccctttccccaatacccgcacttttcccctttacttactgaggtccccagacaacctttgggaaaagcacggaccacagtttttcctgtggttctctgttcttttctcaggtgtgtccttaaccttgcaaatagatttcttgaaatgattgagactcaccttggttgtgttctttgattAGTgcctgtgacgcagcttcaggaggtcctgagaacgtgtgcacagtttagtcggcagaaacttagggaaatgtaagaccaccatcagcacataggagttctgcattggtttggtctgcattggtttggtctggaaggaggaaaattcaaagtaatggggcttacaggtcatagatagattcaaagattttctgattgtcaattggttgaaagaattattatctacagacctgctatcaatagaaaggagagtctgggttaagataagagactgtgg

+s panTro2.chr1_random 1070246 811 -   9420409
CATCCGGGAAAGCTTTGGATCACAATTCCCAGtgctgaagaaaaggccaaactctggaaaaaatttgaatattttgagccaaatgtgaggaccacaacctgtgagaatggaaaataaatcctgagaccccagactcactaagccaaagggaaaagccaagctgggaactggcttatgcaaacctgcttcccatctggttcctaaataagatagctattacacaaagataaaaaagctacatccctgcctctacctccatcgcatgtaaaatgtgtattcagtgaacgctgaccaaagactgaagaatgcaaccatttgcctctgatttacccacacccattttttccacttcttcccctttccccaatacccacacttttcccctttacttactgaggtccccagacaatctttgggaaaagcacggaccatagtttttcctgtggttctctgttcttttctcaggtgtgtccttaaccttgcaaatagatttcttgaaatgattgagactcaccttggttgtgttctttgattAGTgcctgtgacgcagcttcaggaggtcctgagaacgtgtgcacagtttagtcggcagaaacttagggaaatgtaagaccaccatcggcacataggagttctgcattggtttggtctgcattggtttggtctggaaggaggaaaattcaaagtaatggggcttacaggtcatagatagattcaaagattttctgattgtcaattggttgaaagaattattatctacagacctgctatcaatagaaaggagagtctgggttaagataagagactgtgg

+
+a score=13698
+s hg18.chr1        82250 144 + 247249719
agaccGTGCATAGTTGCTTCCTGATCAGCTCTTTATTTGATTGAGAGTGAGGCAGGGAAGATTAGAGGGAAGCTTACAGTGGAATTCAGGGCTGAGGCTGCTATTCTTTTGCTCCTTGTAACTTCCTACAGTGTTGTCAGCATC

+s panTro2.chr1 223987967 144 + 229974691
AGACCGTGCATAGTTGCTTCCTGATCAGCTCTTTATTTGATTGAGAGTGAGGCAGGGAAGATTAGAGGGAAGCTTACAGTGGAATTCAGGGCTGAGGCTGCTATTCTTTTGCTCCTTGTAACTTCCTACAGTGTTGTCAGCATC

+
+a score=27022
+s hg18.chr1             82394 321 + 247249719
CACATACTTCTCTG-TGGGGTTggtctcagagccaggttaccttgtcttaggtccagtggcaccctgactggcttggtgtccttgaacaagttacctaacctctccaaacctcagtccctcagttgtaaaattaaaaaaaaaaaaaagaagaagaagagtacctactgtatagcattgatttgaagattgaatgagctggtattatacaacgtttagaagcagtgcctgacacgcaaaaggctctcaacaaatACTATCCTTTACTAATATCCTGTGTGTCTGTATCAGAGCTGGTGGGGTGGAGGGACAGAAACAAGTGGG

+s panTro2.chr1_random 7070572 317 +   9420409
CACATAATTCTCTGGTGGGGTTGGTCTCAgagccaggttaccttgtcttaggtccagtggcaccctgactggcttggtgtccttgaacaagttacctaacctctccatacatcagtccctcagctgtaaaatttaaaaaaaaaaaaa--agaagaagagtacctactgtatagcattgatttgaagattgaatgagctggtattatac---gtttaaaagcagcgcctgacacgcaaaagactctcaacaaatACTATCCTTTACTAATATCCTGTGTGTCTGTATCAGAGCTGGTGGGGTGGAGGGACAGAAAGAAgtggg

+
+a score=198719
+s hg18.chr1        82715 2225 + 247249719
AGAAGGTaaagagatggacaaatgatctctaaagtctctctggcactaacaCAATTCTTTATTATGTGTTTTGTCTGGCTCTTTATATTGATAGCTGTTCCAGAGGCAATCAATAGCTATTAGTCGGTTTTATTCTTATTTTTCTGTCTGATCTTACAGGGGAGCAAACTGTGGCAAAGTATGAACTTACTTCTCAGGAAATTAACCATTATATTGGCAATCACTGTGATTATTTGAACTTCAGCGTCTGGACAAATTTAGTCACATGAAATACAGAAGAGAGATTTCTCATGGTTAAAACGAAGCTCTCTTTATTTGCTTCTGCTAATTAAAAAATCAGAGCTAAAGATACTTAAACACTACAGTTAAAATGCCATGGTTGTCTATTGGCTTAACGAATTCTCTTATGAAATCAACTCTAAAATGCTATCCATCATAAATCATGAAACGCAATTTTTCTTATTCTCTTTAGAGCTTTACAATTCATCTTAAAGACCAGTGTTTACACTCTCTTCTGTAGGTTGTACAATAACTTTTGGCGAGAAAAAATAAAAGTCTGGCTTTCTGACTCATAGGTGTGTTCCCTTTAACAGAAAAAGAAAATATGTCCTCTTTAAAACTGATGATCATTGGTCACCTCAATTTTATTGAAGTTCACTTCTGACCTCTTTAGATGTAGTTCTCTACATAAAACTGCCCAACAGAATTCTCTGTCTGAATGTCTCCTCCACAAACAAAATTTTAAGAACTAAAATTATCATCTTTCCTTCCAAATATGCTCTCCCTATGTCCCCAGGGCTCTCCATGTGTAGAGCTGAGACCATTTGCCACTCAGTTTCCTCACCCAATTAATTACAAGTCCCAACAATTTTCCGGtttttttgtttttgtttttgtttttagacggagtcttgctctgtcaccaggctggtgtgcggtggtgcaat

ctcagctcactgcaacctccgctgcctgtgttcaagcgattctcctgcctcagcttcccaagtagctgggattataggtgtgtgccactacatccagataatttttgtatttttagtagagaggggatttcaccatattggcccagatgatctcaatctcttgacctcatgatctgcccaccttggcctcccaaagtgctgggattacaggtgtgagccgccatccctggccCAGTTTTGCCTTTTTAACATCCCTCAGCTCTTCAAATCCATTTTCTcttctctaacacctccccattccccagctcgtaatgaactcgtaagtagattactacaatcacctcccaaatggtcttcctggctccatcagccttgtgaccttcaagttcattttccacatggatgtcagagtaactttctaaaatgaaaatctgaccacgttactctcttgcctaaatccgcctatggccgctgttaggatcaagtctaaactcccgaccctggaacatcaggtcttcgtgctctgttcactgcttctctacctcacctgcaaccaACACCACTCCCACATCCATATGCTGCTCACCGTGTATCAACATGAACAGGAGGTGGGTGTTTCAGTCCCCAGGAAGACACTGGGCCTTTTCAATCATCTACTGCTGTGTAATAACCACCCCGCAAACTGACCACATGATTTCATTTTGCAAGGGTTCCTTCCTTgggctgtgttcagcaaaagggtttactgagctggcaggtccaagatggcctcactcacaggactggctgttgatgggagccttgatgctcttgggctcaccccttatcctccagtaggttagagcttcttacagtggtttcaggcagcatctgaagacagtaaaagcagaagctccaaggcttcttacattctagcctggaaaatcacatcacattgcttccttcata-tttttttggcaaatcaggttgcaaggcttgcccagattag

ggtaaagaggcaaagaggctccttttcttTTCttttctttttttttttttttttttttttgagtcagaatctcgctctgttgcccaggctggagtgcagtggtgcaatctaggctcactgcaagctctgcctcctgggttcacgtcattctcctgcctcaggctcccaagtagctgagactacaggcacctaccaccacgcctggctaatttttttttattttt------tattttttagtagagactgtgtttcactgtgttagccaggatggtctccatctcctgacctcgtga

+s panTro2.chr1 223988426 2212 + 229974691
AGAAGGTAAACAGATGGGCAAATGATCTCTAAAGTCTCTCTGGCACTAACACAATTCTTTATTATGTGTTTTGTCTGGCTCTTTATATTGATAGCTGTTCCAGAGGCAATCAATACCTATTAGTCGGTTTTATTCTTATTTTTCTGTCTGACCTTACAGGGGAGCAAACTGAGGCAAAGCATGAACTTACTTCTCAGGAAATTAACCATTATGTTGGCAATCGCTGTGATTATTTGAACGGCAGCATCTGGACAAATTTAGTCACATGAAGTACAGAAGAGAGAGTTCTCATGGTTAAAACGAAGCTCTCTTTATTTGCTTCTGCTAATTAAAAAATCAGAGCTAAAGATACTTAAACACTACAGTTAAAATGCCATGGTTGTCTATTGGCTTAATGAATTCTCTTATGAAATCAACTCTAAAATGTTATCCATCATAAACCATGAAACACAATTTTTCTTATTCTCTTTAGAGCTTTACAATTCATCTTAAAGACCAGTGTTTACACTCTCTTCTGTAGGTTGTACAATAACCTTTGGCGAGAAAAAATAAAAGTCTGGCTTTCTGACTCATAGGTGTGTTCCCTTTAACAGAAAAAGAAAATATGTCCTCTTTAAAACTGATGATCATTGGTCACCTCAATTTTATTGAAGTTCACTTCTGACCTCTTTAGATGTAGTTGTCTACGTAAAACTGCCCAACAGAATTCTCTGTCTGAATGCCTTCTCCACAAACAAAATTTTAAGAACTAAAATCATCATCTTTCCTTCCAAATGTGCTCTCCCTATGTCCCCAGGGCTCTCCATGTGTAGAGCTGAGACCATTTGCCACTCAGTTTCCTCACCCAATTAATTGCAAGTCCCAACAAttttcc------------tttttttttttttttaaatggagtcttgctctgtcaccaggctggtgtgcggtggtgcaat

ctcagctcactgcaacctccgctgcctgggttcaagcgattctcctgcctcagcttcccaagtagctgggattataggtgtgtgccactacatccagataatttttgtatttttagtaaagaggggatttcaccatattggcccagatgatctcaatctcttgacctcatgatctgcccaccttggcctcccaaagtgctgggattacaggcatgagccaccatccctggccCACTTTTGCCTTTTTAACATCCCTCAGCTCTTCAAATCCATTTTCTcttctctaacacctccccattccccagctcgtaatgaactcttaagtagattactacaatcacctcccaaatggtcttcctggctccatcagccttgtgaccttcaagttcattctccacatggatgtcagagtaactttctaaaatgaaaatctgaccacgttactctcttgcctaaatctgcctatggccgctgttaggatcaagtctaaactcccgaccctggaacatcaggtcttcgtgctctgttcactgcttctctacctcacctgcaaccaacaccactcccacatccatattctgctcACCGTGTATCAACATGAACAGGAGGTGGGTGTTTCAGTCCCCAGGAAGACACTGGGCCTTTTCAATCATCTACTGCTGTGTAATAACCACCCCGCAAACTGACCACATGATTTCATTTTGCAAGGGTTCCTTCCTTgggctgtgttcagcaaaagggtttactgagctggcaggtccaagatggcctcattcacaggactggctgttgatgggagccttgatgctcttgggctcaccccttatcctccagtaggttagagcttcttacagtggtttcaggcagcatctgaagacagtaaaaacagaagctccaaggcttcttacattctagcctggaaaatcacatcacattgcttccttcatattttttttggcaaatcaggtttcaaggcttgcccagattag

ggt--------aaagaggctccttttcttttcttttcttttcttttctttttttttgtttgagtcagaatctcgctctgttgcccaggctggagtgcagtggcacgatctaggctcactgcaagctctgcctcctgggttcacgccattctcctgcctcaggctcccaagtagctgagactacaggcacctgccaccacgcccggctaattttttttttttttttttttgtattttttagtagagactgtgtttcactgtgttagccaggatggtctccatctcctgacctcgtga

+
+a score=51505
+s hg18.chr1             84940 586 + 247249719
tccTTGCAAAGGGACATGCAGACCACATTAGTGAGAATATGTGCCTGTATTTTGCAATCTGTAACATGGGCATAAACTAAATGTTTTCCAAAGGGAATAGGGCAAAACAAAAAGGACCTTGACCACTCCTT-GGCCCTGAATAAATCCAGGAAGCCTAAGAGTATGACTATCCTGAGGTAGAAAGAGGGTCACATGCTGGATAAGAGGTACCTGGGCTCTCCACTTACAAGAAGAGAGCATGGTTACATTTATAATCACCATTCCCAACATGCTGTGAGTGCAGGCAGCTACCAGGAGGAGAACAAAGGAAATAACCAGGACACTCATCTCTAAACCTGTTAATTTAATCACACGGAACACTTCTATTTAAAATTCCCGAGAGTTAAGATGTAAGAATGCTTATCAAGGTAAATGCTGTTCACACTGCTTGGAGTGTCAGGCCTAGATCTCTATCCATCAGAaacaacaatatcaataacaacaacagcaacaTGATGATGGGGCAATTTCTTAAAAGCACCATGTATTTTATCGATACATGTCCGTTGCAGAAAATCCAGGTGAATCCAAAGAAGAAATAAATGTC

+s panTro2.chr1_random 7071473 587 +   9420409
TCCTTGCAAAGGGACATGCAAACCACATTAGTGAGAGTATGTGCCTGTATTTTGCAATCTGTAACATGGGCATAAACTAAATGTTTTCCAAAGGGAATAGGGCAAAACAAAAAGGACCTTGACCACTCCTTTGGCCCTGAATAAATCCAGGAAGCCTAAAAGTATGACTATCCTGAGGTAAAAAGAGGGTCACATGCTGGATAAAAGGTACCTGGGCTCTCCACTTACAAAAAGAAAGCATGGTTACATTTATAATCACCATTCCCAACATGCTGTGAGTGCAGGCAGCTACCAGGAGGAGAACAAAGGAAATAACCAGGACACCCATCTCTAAACCTGTTAATTTAATCACATGGAACACTTCTATTTAAAATTCCCGAGAGTTAAGATGTAAGAATGCTTATCAAGGTAAATGCTGTTCACACTGCTTGGAGTGTCACGCCTAAATCTCTATCCATCAAAAACACCCATATCAGTAACAACAACAGCAACCTGATGATGGGGCAATTTCTGAAAAGCCCCATGTATTTTATCAAAACATGTCCGTTGCAAAAAATCCAGGTGAATCCAAAAAAAAAATAAATGTC

+
+a score=89302
+s hg18.chr1        85526 984 + 247249719
TTCCACAATCCCATAGCCCAGAGCTAACTAACCACTATAAAGAACCCAGCGTGGTTTTAACTAATGGATCAAAAGATGCTCATCAAAGGCTCTGAGCTTTCCTGAGTGCTAACAGGAAACATCCAGCATCACTGGTCTCTCCAAGGCTGCAGGTGTCTTTGCCCATAGTGCCTGTTTTGTGTCAGGGAAAGAATCAACCTGGGAGCCAAGCCCAGGAATCAGGATGACCAAGACATACTGCACAAGGAGGGAACAAACCCATCCAAGGACACTCAAGGACAAATCAAGCAAATGAATTTAAGGGAGACGTGCTCATGGTCTGCTTTGCTGCTCAGCATGGCTGGGAGGCACAGTGGAAGATCATGCATCCTGCCCCTGGGACTCCTCTGCCAGAGCCTGAGAGCTTTCTCCTGCCCACAGGCTAGGGGTAGGGCAGTTGGAATTGATCCATGCCTTCTAGCTAGACTGTGGGTCCCCTCAGTCTTGGGCATGGTGACAGCCCAGCATCAGACAGAGGTCAGTATCAAACTAGAAAATTTAATAAATACTGTCAGATTTGTAGACCCAAGAAAATATAAACTGCCAATCACGGAGGAAAAAAA-TCTCTCAATGATCTTATCTTTATATGATTCCCTTGCTGCCTGGAGATTGACATTTCCTTGGGGATAATCTGGTCATAGGATTGGTGAAGGTGGAAGGGAGGCAACCTCCAAAGGTGGGGCCCTCTGCTCACCTGGGACAGGGAGGGCCTGAGGTAGGTGTCTGTGTGGGCTGGGGAGGAGGATGGGAGCAGTGCTTCTAGATGTTTCCACTTTCTCCTCATTAGATAATAACGAATGGGTGATTTCCCTAGTCACTGCAGTGTGAGGAAATCTACAAAATTAATTTCACAATACGCTTTACAGGATAGGTGGAGAAACACATGAAGTACAACTGCAGTGGGTTAT
 AAAAAACGGCCTTTCGAGTTGAGCAATAAATTCGTTC 
+s panTro2.chr1 223991333 983 + 229974691
TTCCACAATCC-ATAGCCCAGAGCTAACTAACCACTATAAAGAACCC-GTGTGGTTTTAACTAATGGATCAAAAGATGCTCATCAAAGGCTCTGAGCTTTCCTGAGTGCTAACAGGAAACATCCAGCATCTCTGGTCTCTCTAAGGCTGCAGGTGTCTTTGCCCATAGTGCCTGTTTTGTGTCAGGGAAAGAATCAACCTGGGAGCCAAGCCCAGGAATCAGGATGACCAAGACATACTGGACAAGGAGGGAACAAACCCATCCAAGGACACTCAAGGACAAATCAAGCAAATGAATTTAAGGGAGACCTGCTCATGGTCTGCTTTGCTGCTCAGCATGGCTGGGAGGCACAGTGGAAGATCATGCATCCTGCCCCTGGGACTCCTCTGCCAGAGCCTGAAAGCTTTCTCCTGCCCACAGGCTAGGGGTAGGACAGTTGGAATTGATCCATGCCTTCTAGCTAGACTGTGGGTCCCCTCAGTCTTGGGCATGGTGACAGCCCAGCATCAGACAGAGGTCAGTATCAAACTAGAAAATTTAATAAATGCTGTCAGATTTGTAGACCCAAGAAAATATAAACTGCCAATCACAGAGGAAAAAAAATCTCTCAATGATCTTATCTTTATATGATTCCCTTGCTGCCTGGAAATTGACATTTCCTTGGGGATAATCTGGTCATAGGATTGGTGAAGGTGGAAGGGAGGCAACCTCCGAAGGTGGGGCCCTCTGCTCACCTGGGACAGGGAGGGCCTGAGGTAGGTGTCTGTGTGGGCTGGGGAGGAGTATGGGAGCAGTGCTTCTAGATGTTTCCACTTTCTCCTCATTAGATAATAACGAATGGGTGATTTCCCTAGTCACTGCAGTGTGAGGAAATCTACAAAATTAATTTCCCAATACACTTTACAGGATAGGTGGAGAAACCCATGAAGCACAACTGCAGTGGGTTAT
 AAAAAATGGCCTTTCAAGTTGAGCAATAAATTCATTC 
+
+a score=248118
+s hg18.chr1             86510 2747 + 247249719
AAGCAGCCATTCTGAAGGACAAAC-TGGCTCTGTATTTAAGAGGGGCATTCCAGCACTTCTCTAGCCACTGGGTTGACAATGACTCACCAAAGCCTCTGGTAGCCACCACAGGACACCCAGAGCATATGTTTTAAAGCTGAACACCAAACTGCGGACTTCGGGAGTAAGTGAACTGACTGGTTTTTATTTTGTTTTACTGCTTTTAACATTACAGTAACTGTTACAGGTTCCAGCAGGCTAACTGGGTGGAAATGAGTTTGGTTTCACTTAGTCTCTCTAAAGAGAAAGCAAGTCGGTAGACTAATACCTAATAAAAGCAAAGCTGCCAACAATTGAAATTGCCTAGGCTGCTCTGTGTGTCCCACAtgcatgggtgtgggtgccagtgtgtgtgcgtgtgtgcatgcatgtgcatgtgtgtTGGGATAGAGTGGTAAGAAAATGGGAAATAATAAGAATGTTCAGTCCATAGCCCTTCATTATAAAAAGGTGAGCTGTAATAAATACTAGTGCCACATTTAGCCAAAACTTTACTCCAGCCAAAGGTGATATTTTCATGATAACATCCTGTGATTGCTTTGTTCTTCGTCTTTTATGTTCTTCCTAGATGGGCTCAGAACATACAAGAATTAAGTACACATCTTATTTTCCAGTGATAATGCTACCGGCAAATTCTGTTGTTTGTATAAACATCAGCCATGTTTATATAACTAAACTAGTGTTTTGTTTTGTCAATTCAGCAAGAAATTAGACCAAATGGTGGCTTAATGCTGCATTGATTTGGCTATCAATTTGTTTTCACTTTTCTGCAAAATAATTAATACATTATTAAATTGAATTGTGCTGATGCCACAGTTGTTCTTATCTCAAGTGTCTTAAAATTCATTTAATTTGTTTTTCCTTTGGTTTCATTATTCAAATTTTAACTTCAGTTCTCAAGA

TTTTATCTGATGGAAGAGATGGAGTCCATTACTAAGGACTCCATTGTGCTCCATCATGCCAGAGTTGTAAAATAGATCTTTTAAAGGAAATTTACTGTGATTTTTTTTCTATTTAAGAGCTTCCTCTCCAGTTGAGCATGTAAGAAAATTATACCAGGAGAATACAGTAAACTCTATGAGGCAAGCTATAAACATGTAGCATTGTGATTAGGGctggttctccttctagagacatggtaggattgcaatttcataccatccttgaagttagagagagccacgtgactcatttagccaatgaactgtgagcagaatgacatgtcacttccagctgaagctttaaCAATCTGAGAGACATTCATACATTTTCCATGTGCTGTAGCCTTATACCCAAAGCCTGGGTCCCAAGTGACCATGACAGGCAGAGCTCCCTGttgagccacagagatttagagaatggctgttaacacagcataatccagcccatcctgactaatCTGATATTAACATGTATAATAAAGAATTCTATCAATGCTGAGGGAAGATGACTAGTTAAGGTCCTAGGTTGCAAGTCTCAAAACCTCTTCTAAGGATTGTAGACAGGAAATTAAATGACTTCTAGTCCCTAGAGTTCCCAATCTCCTACCATCCCATCCTAATATGACAGAAGTAATTCCTGAGTTGCTTCTGAAACCAGAGCTTCCCTCAGAACCCTTAGCCTGCCAGATGGCTTCTTGGAGAGCCCTCACTCACTTTTCTCCTTCTGCTATTGCTGCTCATTCATTCCAGTTTTTAAAAATTCATCTTTATCCAGGAACCTCGCTTCTAGAAAAGTCATACAGGTGCTTCCAGGAGGCTACATGGGCACCCATATTTTTCTAGCCACTTTCATTAGACCAATGCAGCAGAGAAGAAAAGCCTCAATAATTATTATGACATGGCATGTTAGGATACCAAGTAAATTGCATTTGTAAAATGTGATTTTCTGT

TGGTGTTCACTTCAGCTCTACTGACATTTGGTAAGTATTATTGACTGACTGACTAACTAATGTGGTCATTAGTCTTCATAAAGAAAGGCTCTCTACAAAAACGGAGGGATGCCCTTTTTCTGGCATTTAATACGTAAGAAATTGCCTCCAATAGAAACCAGAGTTGCCTGATTACTATCAGCACAGGAGAAATGTATTAATGTGCCTTTCTAGTAACAGGTTTTTAGAAAGTCAAATATAAACAAATCTGTCTATTTGTGTGTGTGCATGTGGTAGTGGGGAGGGAAGAAAAAAGGAGGGGGAGAGAAAGAGAAATAAGAACCAAGTTTATTATACTGTATTCAGGGGGAAAAAATTTTCCCAAGGTCCTAACAGAAGAGCAAAGTGCCACTGTCAATAGCCTCAGTAGTGTTAGGGTTGCTtttatttatttatttatttatttatttatttatttatttatttttcc--ttttttttctttctctttttttcttcttttttttttcttttctttc------ttttttttttttttttttttttttggacagagtctcacactgtcacctgggctggagtgcattggtgcaatctcgactcactgcaacttctgcctcccaggttcaagtgattctcctgcctcagccgcccaagtagctgggattacaggtgtctgccaccgtgcctagctaatttttttgtatttttagtagagatgaggtttcactatgttggccaggctggtctcaaactcctgacctcatgatccacccacgttggcctcccaaagtgctgggattacaggcgtgagccaccgcccctg

+s panTro2.chr1_random 7073124 2744 +   9420409
AAGCAGCCATTCTGAAGGACAAACGTGGCTCTCTATT-AAGAGGGGCATTCCAGCACTTCTCTAGCCACTAGATTGACAATGACTCACCAAAGCCTCTGGTAGCCACCACAGGACACCCAGAGCATATGTTTTAAAGCTGAACACCAAACTGCGGACTTCGGGAGTAAGTGAACTGACTGGTTTTTATTTTGTTTTACTGCTTTTAACATTACAGTAACTGTTACAGGTTCCAGCAGGCTAACTGGGTGGAAATGAGTTTGGTTTCACTTAGTCTCTCTAAAGAGAAAGCAAGTCGGTAGACTAATACCTAATAAAAGCAAAGCTGCCAACAATTGAAATTGCCTGGGCTGCTCTGTGTGTCCCACAtgcatgggtgtgggtgccagtgtgtgtgcgtgtgtgcatgcatgtgcatgtgtgtTGGGATAGAGTGGTAAGAAAATGGGAAATAATAAGAATGTTCAGTCCATAGCCCTTCATTATAAAAAGGTGAGCTGTAATAAATACTAGTGCCACATTTAGCCAAAACTTTACTCCAGCCAAAGGTGATATTTTCATGATAACATCCTATGATTGCTTTGTTCTTCGTCTTTTATGTTCTTCCTAGATGGGCTCAGAACATACAAGAATTAATTACACATCTCATTTTCCAGTGATAATGCTACCGGCAAATTCTGTTGTTTGTATAAACATCAGCCATGTTTATATAACTAAACTAGTGTTTTGTTTTGTCAATTCAGCAAGAAATTAGACCAAATGGTGGCTTAATGCTGCATTGATTTGGCTATCCATTTCTTTTCACTTTTCTGCAAAATATTTAATACATTATTAAATTGAATTATGCTGACGCCACAGTTGTTCTTATCTCAATTGTCTTAAAATTCATTTAATTT-TTTTTCCTTTGGTTTCATTATTCAAATTTTAACTTCAGTTCTCAAGA

TTTTATCTGATGGAAGAGATGGAGTCCATTACTAAGGACTCCATTGTGCTCCATCATGCCAGAGTTGTAAAATAGATCTTTTAAAGGAAATTTACTGTGATTTTTTT-CTATTTAAGAGCTTCCTCTCCAGTTGAGCATGTAAGAAAATTATACCAGGAGAATACAGTAAACTCTATAAGGCAAGCTATAAACATGCAGCATTGTGATTAGGGctggttctccttctagaaacatggtaggattgcaatttcataccatccttgaagttagagagagccacgtgactcatttagccaatgaactgtgagcagaatgacatgtcacttccagcagaagctttaagaatctgagagacattcatacgttttccatgtgctgtagccttatacccaaagcctgggtcccaagtgaccatgacaggcagagctccctgttgagccacagagatttacagaatgtctgttaacacagcataatccagcccaacctgactaatCTGATGTTAACATGTATAATAAAGAATTCTATCAATGCTGAGGGAAGATGATTAGTTAAGGTCCTAGGTTGCAAGTCTCAAAACCTCTTCTAAGGATTGTAGACAGGAAATTAAATGACTTCTAGTCCCTAGAGTTCCCAATCTCCTACCATCCCATCCTAATATGACAGAAGTAATTCCTGAGTTGCTTCTGAAACCAGAGCTTCCCTCGGAACGCTTAGCCTGCCAGATGGCTTCTTGGAGAGCTCTCACTCACTTTTCTCCTTCTGCTATTGCTGCTCATTCATTCCAGCTTTTAAAAATTCATCTTTATCCATGAACCTCGCTTCTAGAAAAGTCATACAGGTGCTTCCAGGAGGCTACATGGGCACCCATATTTTTCTAGCCACATTCATTAGACCAATGCAGCAGAGAAGAAAAGCCTCAATAATTATTATGACATGGCATGTTAGGATACCAAGTAAATTGCATTTGTAAAATGTGATTTTCTGT

TGGTGTTCACTTCTGCTCTACTGACATTTGGTAAGTATTATTGACTGACTGACTAACTAATGTGGTCATTAGTCTTCATAAAGAAAGGCTCTCTACAAAAACGGAGGGATGCCCTTTTTCTGGCATTTAATACGTAAGAAATTGCCTCCGACAGAAATCAGAGTTGCCTGATTACTATCAGCACAGGAGAAATGTATTAATGTGCCTTTCTAGTAACAGGTTTTTAGAAAGTCAAATATAAACAAATCTGTCTATTTGTGTGTGTGCATGTGGTAGTGGGGAGGGAAGAAAAAAGGAGGGGGAGAGAAAGAGAAATAAGAACCAAGTTTATTATACTGTATTCAGGGGGAAAAAATTTTCCCAAGGTTCTAACAGAAGAGCAAAGTGCCACTGTCAATAGCCTCAGTAGTGTTAGGGTTGC--------atttatttatttatttatttatttatttatttatttttccttttttttttctttctctttttttcttcttttttttttcttttctttctttcttttttttttttttttttttttttttggacagagtctcacactgtcgcctgggctggagtgcattggtgcaatcttgactcactgcaacctctgcctcccaggttcaagtgattctcctgcctcagccgcccaagtagctgggattacaggtgtctgccaccatgcctagctaatttttttgtatttttagtagagatgaggtttcactatgttgg-caggctggtctcaaactcctgacctcgtgatccacccaccttggcctcccaaagtgctgggattacaggcgtgagccaccgcccctg

+
+a score=206892
+s hg18.chr1             89257 2260 + 247249719
gccAGGATTGCTTTTACAGCCAGTCTTCAGGTGCCCACTGTAGGAACAATGTCATTTAACCCTCGGGATTATTCTGTGCCAAATATGGATAATGACTAATATCCAACACAGATATTCTCAGCTCAGAAGAGCAATTAGCAAATTCATAAATTAAGTGCTTGCTTCCTCTTTAGTCAAATACAAACGTTTGTTAAAAGATATTATTTTGCTTTACACTTTTTCTCTCAGAAATAAGCAGATGCTTGAATTCCCACAGTGCTGCTTGAGCCTCACACCATGTCATCCTGCCAGGCACCCAGATCCAGTTCTAGAGTTTCACATGATCGTGAgtgttggttaataagtcaatgtgaactgggaggggagatttttcaggagtgccacagggctctccctttaatcACATACACTCCCTGCTTTCATTGGAAAGTGTATAATGATGTCAGAGTGCCCCAGAATGGAGCTAGTTGGAAGACTGCCGTCATAGGGATGCCTTAGTGAATTAATAAGGTTTTAATTTCTGGCTCTCAACTTTGTAGATGTAAAAGTTGATTTATCAATATGTGAGAAAGGATGAATCTTTCTGAAGGTTATGTCATCACACTCACTAAGCACACAGAGAATAATGTCTAGAATCTGAGTGCCATGTTATCAAATTGTACTGAGACTCTTGCAGTCACACAGGCTGACATGTAAGCATCGCCATGCCTAGTACAGACTCTCCCTGCAGATGAAATTATATGGGATGCTAAATTATAATGAGAACAATGTTTGGTGAGCCAAAACTACAACAAGGGAAGCTAATTGGATGAATTTATAAAAATATGCCTCAGCCAAAATAGCTTAATTCACTCTCCCTTATCATAAGGATAATCTTGCCTAAAGGGACAGTAATATTAAAGACACTAGGAATAACCTCTGTACTTTGGACAGTAGACCTGC

ATAGCCCATTAGGCCTCAATGAAGTCTTATGCAAGACCAGAAGCCAATTTGCCA-TTTAAGGTGATTCTCCATGTTTCTGCTCTAACTGTGCTTCACAATACTCAAAACACTAAATCAGGATGTTTCCTGGAGTTCAGGGAGCTGTCCGTGTTACTGAGCAGTTCTCAGCAACACAAAGATCCTACTGACTCCTCATCAGACTTCTTTCTCACTGGAATTTTACACCTGGGCTGTTAACACCAGGCCAGGTCAAATTCAAAGGAGAGAAAAAAGCTCATTATGAAGGGTAAAATCCAAAACACTGTGCATAAAGATATG---GCACAATTTTTATACATAAAGATTTCATAAAACCAAAGCATCAGGAAATGAAAAGAGATACAGAAAGAAAAATGATGGTAAATGAGACATTAATTTACCCTTCTAATCTCTATCACAGCAAAAAGATAATTAAAAAATCTATATGAGGACCACAAAATACACAAAAATTATGTAGCAAAGCCTATAGCCTGAAAAAGTAAACATTGAAATTTGTATGTCCATAAAATGTTTACAAAATTCAGTACATATTACACACCCCACCCTAAAAACATCTAAGCAAAGTAGAGAATGTAGAAATGCTACAGATTATATTCTCTGATTATGACACAACAAAACTAGAAATTACAGCATGGAAATTTAAAAGCTTTCTCTTAAATAATTCTATGTCAAAAAGAAATCCAggccgggtacagtggctcatgcctgtaattccagtactttgggaggccaaggtgggcaggtcacttgaggtcagcagttcaagaccagcctcgtcaacatggtaacaccctgtctctactaaaaatacaaaaattagctgggcctggtggctcatgcctgtaatcccagctacttaggaggctgaggcaggagaattccttgaacccagaaggtggaggttgcagtgagctgagattgcaccactgcactccagcctaggtgacac

agcaagactctgtcaaaaaaaaaa--aaagaaaTCCAAATAAAATTTCCAGAATATGTGGAAAATAGTGACAATAAAAATATTAcacatgtgtaatcccagcattttgagatgccaaggtggcaggatcacttgagaccaggagttcgcaaccagcctggacaacatagggagactccatctccacacacgcc-aaaaaaaattttaaatagccaggtatagtggtacttcctgtaatcccatctacttgggaggctaaggtgggagaatcacccaacctcaggagttcagggcttcagcaagccatgatcatatcactgcactccagcctcagca

+s panTro2.chr1_random 7087943 2267 +   9420409
GCCAGGATTGCTTTTATAGCCAGTCTTCAGGTGCCCACTGTAGGAACAATGTCATTTAACCCTCGGGATTATTCTGTGCCAAATATGGATAATGACTAATATTCAACACAGATATTCTCAGCTCAGAAGAGCAATTAGCAAATTCATAAATTAAGTGCTTGCTTCCTTTTTATTCAAATACAAACGTTTGTTAAAAGATATTATTTTGCTTTACACTTTTTCTCTCAGAAATAAACAGATGCTTGAATTCCCACAGTGCTGCTTGAGCCTCACACCATGTCATCCTGCCAGGCACCCAGATCCAGTTCTAGAGTTTCACATGATCATGAgtgttggttaataagtcaatgtgaactgggaggggagatttttcaggagggacacagggctctccctttaatcACATACACTCCCTGCTTTCATTGGAAAGTGTATAATGATGTCAGAGTGCCCCAGAATGGAGCTAGTTGGAAGACTGCCATCATAGGGATGCCTTAGTGAATTAATAAGGTTTTAATTTCTGGCTCTCAACTTTGTAGATGTAAAAGTTGATTTATCAATATGTGAGAAAGGATGAATCTTTCTGAAGGTTATGTCATCACACTCACTAAGCACACAGAGAATAATGTCTAGAATCTGAGTGCCATGTTATCAAATTATACTGAGACTCTTGCAGTCACACGGGCTGACATGTAAGCATCGCCATGCCTAGTACAGACTCTCCCTGCAGATGAAATTATATGGGATGCTAAATTATAATCCGAACAATGTTTGGTGAGCCAAAACTACAACAAGGGAAGCTAATTGGATGAATTTATAAAAATATGCCTCAGCCAAAATAGCTTAATTCAGTCTCCCTTATCATAAGGATAATCTTGCCTAAAGGGACAGTAATATTAAAGACACTAGGAATAACCTCTGTACTTTGGACAGTAGACCTGC

ATAGCCCATTAGGCCTCAATGAAGTCTTATGCAAGACCAGAAGCCAATTTGCCATTTTAAGGTGATTCTCCATGTTTCTGCTCTAACTGTGCTTCACAATACTCAAGACACTGAATCAGGATGTTTCCTGGAGTGCAGGGAGCTGTCCGTGTTACTGAGCAGTTCTCAGCAACACAAAGATCCTACTGACTCCTCATCAGACTTCTTTCTCACTGGAATTTTACACCTGGGCTGTTAACACCAGGCCAGGTCAAATTCAAAGGAGAGAAAAAAGCTCATTATGAAGGGTAAAATCCAAAACACTGTGCATAAAGATATGTGTGCACAATTTTTATACATAAAGATTTCATAAAGCCAAAGCATCAGGAAATGAAAAGAGATACAGAAAGAAAAATGATGGTAAATGAGACATTAATTTACCCTTCTAATCTCTATCACAGCAAAAAGATAATTAAAAAATCTATATGAGGACCACAAAATACACAAAAATTATGTAGAAAAGCCTATAGCCTGAAAAAGTATACATTGAAATTTGTGTGTCCATAAAATGTTTACAAAATTCAGTACATATTACACACCCCACCCTAAAAACATCTAAGCAAGGTAGAGAATGTAGAAATGCTACAGATTATATTCTCTGATTATGACACAACAAAACTAGAAATTACAGCATGGAAATTTAAAAGCTTTCTCTTAAATAATTCTATGTCAAAAAGAAATCCAggccgggtacagtggctcatgcctgtaattccagtactttgggaggccaaggtgggcaggtcacttgaggtcaggagttcaagaccagcctcatcaacatggcgacaccctgtctctactaaaaatacaaaaattagctgtgcctagtggcgcatgcctgtaatcccagctacttaggaggctgaggcaggagaattccttgaacccagaaggtggaggttgcagtgagctgagattgcaccactgcactccagcctacgtgacac

agcaagactctgtcaaaaaaaaaaagaaagaaaTCCAAATAAAATTTCCAGAATATGTGGAAAATAGTGACAATAAAAATATTACACATGtgtaatcccagcattttgagatgccaaggtggcaggatcacttgagaccaggagttcgcaaccagcctggacaacatagggagactccatctccacacacgccaaaaaaaaattttaaatagccaggtatagtggtacttcttgtaatcccatctacttgggaggctaaggtgggagaatcacccaacctcaggagttcagggcttcagcaagccatgatcatatcactgcactccagcctCAGCA

+
+a score=160884
+s hg18.chr1        91517 1775 + 247249719
acagagcaagatcctatctcaaaaaaaaaaaaaaaaTCACATGTGGGAAATAGCTATAGCACAAtaaaaataaatgtattaagtatgaacaacaaaaaagctagtaaaggttgaacaacaactatccttaggaaagtggaaataatgtattaataaatatgaaagcaggctagccacggtgactcacatctgtaatcccagcactttgggaggctgaggcaggcagatcacctgaggtcaggagttccagaccagcctggccaacatggtgaaatcttgtctctcctacaaatacaaaaactagccaggcttggttgtgcactcctgtaattcgagctacttgggaggctgaggcaggagaatctcttgaacctgagaggcagaggttgcagtgagccaagatcatgccactgcactccagctggggcaacagagtgacactccatctcaaaataaataaataagaaagcagaaactaataaactagaaaacagaaacatagaactaatttataaatcaaagcactatgccttgaaaagaGGGAGAAAAATTGTGAATTAAGGAAGGGAAGAGATGGTTGGAGAGGAGGTGGGAGAAGGCAGAGATAATTGAAGGAGCAAAAGCATCTGGAGAAGCAAAGCCACTGAAAGATGAACAGGGCTCTGAAAGAGATGCTTGACTGCTATCTTTTCAAATGACTGCAGTTCCCAGTGACATCATTTTTCTCCTCCCTGGAAGTCTGAGGGGCAGTTCACTTATCTCCTCCCCTCCCCTACTCCTCACCCCACACTCAAAACCTGTCTATGCTCCTTTCATTCTCATATGACAGATTTCAGATGGCATTCTTATTTCCCTGATTTCTTTTTGAGATAGCTTGCATTTCCCTCCTCTATataaagccaccgtttatcaaatgcctacatggaccaagcagtccacaagggctt

cacagacagttttactaaactcatgccaaaactttcaggttttatacctaccttatagataaagaaattgaagcttatagagtttaagtaatgttcccaaagcctcgtggctagtaattcaaacctaatttctgcctactccaaagtctatttttccttatgatactctactgcctctcCAtggataaagacagagatcacatattaataaaatttgcacaaagtcggcaaattgttgaaagggaaggctaagatgattaataaaatcaagagccagatgatctcaacaacctgaaataactggctgacaaccaatttgaataactccctgcgggtgaagttcaaagtactatttgggtttttttttaaagtttggctgggtgcagcggctcacgcctgtaatccaagcacttagggaagccaaggtgggcagatcatgaagtcaggagttgaagaccagcccggtcaacatggtgaaaccccatctctactaaaaataaaaaattagccgggcctgctggtggatgcctgtagtcccagctactcgggaggctaaggcaggagaatcgcttgaacccaggaggtggaggttgcagggagccgagatcgcaccactgcactccagcctgggcgacagagcgagattccgtctcaaaaagtaaaataaaataaaataaaaAATAAAAgtttgatatattcagaatcagggaggtctgttgggtgcagttcatttgaaaaattcctcagcattttagtGATCTGTATGGTCCCTCtatctgtcagggtcctagcaggaaattgttgcactctcaaaggattaagcagaaa

+s panTro2.chr1 223998133 1767 + 229974691
acagagcaagatcctatctc---aaaaaaaaaaaaaTCACATGTGGGAAATAGCTATAGCACAAtaaaaataaatgtattaagtatgaacaacaaaaaaactagtaaaggttgaacaacaactatccttaggaaagtggaaataatgtattaataaatatgaaagaaggctaggcacggtgactcacatctgtaatcccagcactttgggaggctgaggcaggcagatcacctgaggtcaggagttccagaccagcctggccaacatggtgaaatcttgtctctcctacaaatacaaaaactagccaggcttggttgcacactcctgtaattccagctacttgggaggctgaggcaggagaatctcttgaacctgggaggcagaggttacagtgagccgagatcatgccactgcactccaactggggcaacagagtgacactccatctcaaaataaataaataagaaagcagaaactaataaattagaaaacagaaacatagaactaattcat-----aaagcactatgccttgaaaagaGGGAGAAAAATTGTGAATTAAGGAAGGGAAGAGATGGTTGGACAGGAGGTGGGAGAAGGCAGAGATAATTGAAGGAGCAAAAGCATCTGGAGAAGCAAAGCCACTGAAAGATGAACAGGGCTCTGAAAGAAATGCTTGATTGCTATCTTTTCAAATGACTGCAGTTCCCAGTGACATCATTTTTCTCCTCCCTGGAAGTCTGAGGGGCAGTTCACTTATCTCCTCCCCTCCCCTACTCCTCACCCCACACTCAAAACCTGTCTATGCTCCTTTCATTCTCATATGACAGATTTCAGATGGCATTCTTATTTCCCTGATTTCTTTTTGAGATAGCTTGCATTTCCCTCCTCTATataaagccaccgtttatcaaatgcctacatggaccaagcagtccaaaagggctt

cacagacagttttactaaactcatgccaaaactttcaggttttatacctaccttataggtaaagaaattgaagcttatagagtttaagtaatgtttccaaagcctcgtggctagtaattcaaacctaatttctgcctactccaaagtctatttttcctcatgatactatactgcctctcCAtggataaagacagagatcacatattaataaaatttgcacaaagtcagcaaattgttgaaagggaaggctaagatgattaataagatcaagagccagatgatctcaacaacctgaaataactggctgacaaccaatttgaataattccctgcgggtgaagttcaaagtactatttggggtttttcttaaagtttggctgggtgcagcggctcacgcctgtaatccaagcacttagggaagccaacgtaggcggatcatgaagtcaagagttgaagaccagcctggtcaacatggtgaaaccccgtctctactaaaaataaaaaattagccgggcgtgctggtggatgcctgtagtcccagctactcgggaggctaaggcaggagaatcgcttgaacccaggaggtggaggttgcagggagccaagatcgcaccactgcactccagcctgggcgacagagcgagattccgtctcaaaaaattaaataaaataaaataaaaaataaaagtttgatatattcagaatcagggaggtctgttgggtgcagttcatttgaaaaattcctcagcattttagtGATCTGTATGGTCCCTCtatctgtcacggtcctagcaggaaattgttgcactctcaaaggattaagcagaaa

+
+a score=258242
+s hg18.chr1             93292 2826 + 247249719
gagtttaatgaagggtctctttccagggttaagggaactgctagggtttggatatttgaccactccaaactcatgttgaaatgtgatccccattgttggaggtggggcctaatgggaggtgttttggtcctgagtgtggacctctcacgaatgtcttggtgccatccaagtgagttcttgctcgctcttttttttctttttgagatgtagtttcactcttgctgcccaggttggaatgtagtggtgcgatcttggctcactgcaacatccacctcacgggttcaacccattctcctgtgtcagcctccagagtagctaggattacaggtgcccaccactatgcccagctaatttttggtatttttagtagagacggggtttcaccatgttggccaggctggtctcaaactcctgacctcaggtgatacacctgcctcggcctcccaaagtgctgggattacaggtgtgagccaccatgcctacctagttctagctctcttaattcccacaagagctggttgttaacaagagcctggcacaaacccctctctctc--gccacgtgatctctgcacatgccagcttcccttccccttctgccatgagtggaaacagcctaacgccctcaccagaagcaaatggtggcaccatgcttcttgcacaccttcagaactgtgagccaaataaacctctcttctttaaaattattcagcctctggtattcctttataacaacacacacacacacacacacacacatacacacacacgcaaaagcagactaaaacaggaactaattagaaatggtgatgcaccgagggattggcaCCGAGGCTCCCCAACAGGAACTGAGGTCATGGATAGAAGGACACATTCATGTTATTTTTTTCTAATGGTTAAGTAATTATTTGctcttactctcaaaatttctgccaaggcctcc

catggaccaaactcaactagaatctaggaagcagagaacctgagtgttgcattcagcagaagtcagcttcctagggaatcttgcaggaagggtgaaggtagagaatctggtggggaagcaagcaaatgcccatcacaTGCACTTTCCTccaacagagcgactcagatgctataaaacttgctaacacagtctcagggtctgatcacagtaacatacaatccaggttttaatcatcagaaatcacagtcctattgtcttctgcacagacccaaacacacttggaggtcatgttcaatatgaatacctcacagagaaggaaatttacacgcgagaagtacatctgcagaaagccagctggcatgtcaaccattcaaaaactcagggtgttctggataaagaagactcaggaagacaagtatgaagcataatctgtgacattccatgcggcagacattagacacatacaagagagttgttggaaagcggaatttatcttcatataaacaacactgagctaaatctcaatatttcagatctctagaactatccatcagtgaaatggattgcaaatacaaagagtaataccatgtcacttaagaatagaatcatggacgaggctgccacctgctgttgggggccactgcagaagaaattccagaacactggactggagagcacctcactttccttacagctctaagtttctgACTCAGTGACCTGATTCACTACCATATACACAAAGACCCACTTACACAAATGACTGTTCTTCACACTAGGCCCATGGAGACAGGGATAAAATTCTGAATTTGCTCAGATACCTTCTCCGCTACTGACATCTAGGCATTACACAATTCATCTCTTCATATTTAACCTTTGAAGTTTGCTACTTCTCAGAGAGACTAATGAGTAGTGAGCAAATATCCTGAAGCTGAGAATGCTTCTACCTCCTCTCAAAACAACGGAATATTCATCAAAACACAGCAGTTCTG

CACTTAACTTTAGGCCTTTTCTAACACCTTGTTTCTTGGCAGTAACTGTGGCCAGAATAGCTCTTTCCACAGATAAAGGACCTTTTGAAAGGATAGGGTCTCTAGATAGAAAAGCAAATGCCTCATTCCAGAAGGTCTTCAAGAAGAAAATGTTGTGGTGATAACAAACATAACTGATTATAATCTATTCTGTGAAAAAAGCTTATGAAACAGTAGATGTGTGTATCTAGTACATAAGAGCTGAATGTCAATATATATATA--GATATATACacacactcaaataaataatagttatctctaactagagaaattctagttgccttatattttcttctttttccttactatattttctacaataaacatgtgtttttaacaagaaaaGTCTTTTCTGGTGTGCTTTTTAATTTTCTTTGTTTAAGTGAGAGTGAGGCTACATAACTACATGGCTAGGTAGACTTTTAGAAAACTTGGCTGCTCTAGAAAATTGACATATCCTGATTTCTTCCATAGCTTGGATCTTGACCTAGAGGGAAATATAAAAGTGTTGACTTGAACCTGAGGGGTGCCATTTTCACTGCTGAAGTAGTTTCATGGATCATGAATTGGAGAAATGACTTCAGCAACATGGGTGTTAAAATCAGAAAGCACAAGTGACCCACAACAGATGATGGAGAACAAAGAGCAAGCTGGGAAA-GCAGTGGCCTTTAATACAGAAAAGAAGAAGTATAGCCACAATAAATATTAGGCAGACAGCAGTTCAGCAGTTTATACTATTAAGCTGTTGTTTAGGGGAATAGTAAACTGACATGACCCTTGAGGTAGGTATATATAGGTAAATTCTATGTGTCCCTTGAAATAGGTGTATGACACAACTTCTGGCATCTACATGGATTT

+s panTro2.chr1_random 7090211 2818 +   9420409
gagtttaatgaagggtctctttccagggttaagggaactgctagggtttggatatttgaccactccaaactcatgttgaaatgtgatccccattgttggaggtggggcctaatgggaggtgttttggtcctgagtgtggacctctcacgaatgtcttggtgccatccaagtgaattcttgctcgctcttttttttctttttgagatgtagtttcactcttgctgcccaggttggaatgtagtggtgcgatcttggctcactgcaacatccacctcatgggttcaacccattctcctgtgtcagcctccagagtagctaggattacaggtgcccaccactatgcccagctaatttttggtatttttagtagagatggggtttcaccatgttggccaggctggtctcaaactcctgacctcaggtgatccacctgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgtgcctacctagttctagctctcttaattcccacaagagctggttgttaacaagagcctggcacaaacccctctctctctcgccaagtgatctctgcacatgccagcttcccttccccttctgccatgagtggaaacagcctaaagccctcaccagaagcaaatggtggcaccatgcttcttgcacaccttcagaactgtgaaccaaataaacctctcttctttaaaattattcagcctctggtattcctttataacaacacacacacacacacacacacacat----------gcaaaagcagactaaaacaggaactaattagaaatggtgatgcaccgagggattggcaCCGAGGCTCCCCAACAGGAACTGAGGCCATGGATAGAAGGACACATTCATGTTATTTTTTTCTAATGGTTAAGTAATTATTTGctcttactctcaaaatttctgccaaggcctcc

catggaccaaactcaactagaatctaggaagcagagaacctgagtgttgcattcagcagaagtcagcttcctagggaatcttgcaggaagggtgaaggtagagaatctggtggggaagcaagcaaatgcccatcacaTGCACTTTCCTccaacagagcgactcagatgctataaaacttgctaatgcagtctcagggcctgatcacagtaacatacaatccaggttttaatcatcagaaatcacagtcctattgtcttctgcacagacccaaacacacttggaggtcatgttcaatatgaatacctcacagagaaggaaatttacacacgagaagtacatctgcagaaAGCCAGCTGGCATGTCAACCATTCAAAAATTCAGGGTGTTCGGGATAAAGAAGACTCAGGAAGACAAGTATGAAGCATAATCTGTGACATTCCATGCGGCAGACGTTAGACACATACAAGAGAGTTGTTGGAAAGCGGAATTTATCTTCATATAAACAACACTGAGCTAAATCTCAATATTTCAGATCTCTAGAACTATCCATCAGTGAAATGGATTGCAAATAGAAAGAGTAATACCATGTAACTTAAGAATACAATCATGGACAAGGCTGCCACCTGCTGTTGGGGGCCACTGCAGAAGAAATTCCAGAACACTGGACTGGAGAGCACCTCACTTTCCTTACAGCTCTAAGTTTCTGACTCAGTGACCTGATTCAGTACCATATACACAAAGACCCACTTACACAAATGACTGTTCTTCACACTAGGCCCATGGAGACAGGGATAAAATTCTGAATTTGCTCAGATACCTTCTCCGCTACTGACATCTAGGCATTACACAATTCATCTCTTCATATTTAACCTTTGAAGTTTGCTACTTCTCAGAGAGACTAATGAGTAGTGAGCAAATATCCTGAAGCTGAGAATGCTTCTACCTCCTCTCAAAACAACGGAATATTCATCAAAACACAGCAGTTCTG

CACTTAACTTTAGGCCTTTTCTTACACCTTGTTTCTTGGCAGTAACTGTGGCCAGAATAGCTCTTTCCACAGATAAATGACCTTTTGAAAAGATAGGGTCTCTAGATAGAACAGCAAATGCCTCATTCCAGAAGGTCTTCAAGAAGAAAATGTTGTGGTGATAACAAACATAACTGATTATAATCTATTCTGTGAAAAAAGCTTATGAAACAGTAGATGTGTGTATCTAGTACATAAGAGCTGAATGTCAATATATATATATAGATATATACACACACTCAAATAAATAATAGTTATCTCTAACTAGAGAAATTCTAGTTGCCTTATATTTTCTTCTTTTTCCTTACTATATTTTCTACAATAAACATGTGTTTTTAACAAGAAAAGTCTTTTCTGGTGTGCTTTTTAATTTTCTTTGTTTAAGTGAGAGTGAGGCTACATAACTACATGGCTAGGTAGACTTTTAGAAAACTTGGCTGCTCTAGAAAATTGACATATCCTGATTTCTTCCATAGCTTGGATCTTGACCTAGAGGGAAATATAAAAATGTTGACTTGAACCTGAGGGGTGCCATTTTCACTGCTGAAGTAGTTACATGGATCACGAATTGGAGAAATGACTTCAGCAACACGGGTGTTAAAAACGGAAAGCACAAGTGACCCACAACAGATGATGGAGAACAAAGAGCAAGCTGGAAAAAGCAGTGGCCGTTAATACAGAAAAGAAG---TATAGCCACAATAAATATTAGGCAGACAGCAGTTCAGCAGTTTATACTATTAAGCTGTTGTTTAGGGGAATGGTAAACTGACATGACCCTTGAGGTAGGTATATATAGGTAAATTCTATGTGTCCCTTGAAATAGGTGTATGACACAACTTCTGGCGTCTACATGGATTT

+
+a score=207872
+s hg18.chr1     96118 2256 + 247249719
GGTCACTCTAAAGTAGCCATGAGGCTTAAGATAGTTCAGCTGTTTGGGGATAAGTTAAATCATTTGCCATTGTCTTTCTGCAATTTGCATATCCTACAGTTATCATTGCCATTACTGAATGGCACAGAGAAAAATTCTGGTCTAAAGTGGTTCTCAAACCTGGTtgctggagggccaccctcagtgatgatgatttaatctgtagaagaatagaacattgatagtttttatatatctccaggtaattttaatatataactggggtgagaatcattgACATAATTGTAACAGGATAATATTCAGGAAATATGGAGATAAATAATTTTCTTCTCGACATTAAAAAAATCTAATAAAAAGTTTTATGTTTTCCCCTAACTCAGGGTCATCAGCCTTCAAGCTTCAGTCTCTGTGTGTTCACAGGTGCTGTAAACACACGCATCACTACTAATATCCCACTTCAGTGCTATTGCTGCTCCCAAAACTCCAGGTATTTTTAACCTTATAAACCTCCAGAATAATGAGACCACTGGGTTCAGTAAATTGCTTTGTTTTGAAGCACTATTAGACAAAGTGGGAGACTAGAAGATAAATCTGTCAATGACATGTCCTTTAAGACTACTTAGATTTTGTTGAATTTGTGGATCATTCCTTACTTGAGCAAATGGTAAATTAACTCTCTCTTTTCTCTCTCTCTCTAGCTGGCACACTTTTTCCAGTAGCCATTCTACTTGGTATGCTTACTTATCAGCTGTCCTCCAGGGGCCTCACATTAGATGTTTCTC-TGACTAACCAAACATGACACACAGCTGAAGTCAGAAAAACCAGATTGATAATTTCACTCAAACTATTTTCCTTCATTCTAACAATTTACTGGAGTACACAATTGTGACTATTTTTAGCCATAGGAACTCATAGAAAGACCAACTTCATTAGACCTACAAAATCGAAT

TGTGTAACAGTATATGCAGTATGTGTAGGAATAAAAAGCATTTCTCAAATATGCAGTACTGGATTTTGCAAAAGCACCTTACACTTAGCTATAAAGGAGTGGAAAACACAAAGATGAGTAACTGCACTTTTCAAAAGACTAGAGCTATACCAATAATACAAAGGTGTAAACAAATAATGATGAGATGACAAAGGCTGAGTGTTTTCTATTTGGAAGCTATGTTGTTGAGTTATTTATGTATATAATTTCATGCAATCTTCATGTTATGGGGATGTTctaatccactgtgactctgtccttaaataaaagggagatttggacatagagagaggcacacggggaggatgccatatgagaattgacactgtgctgtcacaagccaaggaactactggaaggagagaaagaggactggaacagttccttccttagcaccttttcaggcagcctagccctgccagcttcttgatctggacttctcacctctagaattgtgaggcaataaatctctgttgcttaagttacccagtttgtggtaccttattacaggagccctaggaaaataattcaTTATataatctgctaaggtagatatgatcattgtctccaatttccatatgaagaaactatgcctcaggcattgtgtcagttgtccaaaatcatacattcctgactcacttcaatgaattcttcattcagcaaaatttttaaggtaccttaaaaaaattatgttaactcttagggccttgctttaaagcttcaatgggcttttcctttgcaaagaataaaatcctaatacttaagcatagctctctttcctggctatgtttctgacatcctcttgtaccatgctcctccttaatcattctgaggttacatcttaagtcctttccccttgccattcccacttcttggaatactttcccatcaactcttcaaagaactgccttctttaagtatttggtctcagttccaatgtcacttccctgt

aaaagcttcctggccatcaagccttctttacacactctattttattttttcatggttcctataacaacctaatatattctcaattgattaactgttttgctgaatactgccttccataagaatggaaagaaaacatggccaggtgcagtggctcacacctgtaatcccaccacttcaggaggctgaggcaacatggcaaaaccttctcttcaaaaaattttttaaaagttagctggatgttgtggaggcaagaggatcacttgaggatcacttgagtccatgaggtcaaggctgcagtgagtcatgtttgcaccactg

+s panTro2.chr1 243304 2257 + 229974691
GGTCACTCTAAAGTAGCCATGAGGCTTAAGATAGTTCAGCTGTTTGGGGATAAGTTAAACCATTTGTCGTTGTCTTTCTGCAATTTGCATATCCTACAGTTATCATTGCCATTACTGAATGGCACAGAGAAAAATTCTGGTCTAAAGTGGTTCTCAAACCTGGTtgctggagggccaccctcagtgatgatgatttaatctgtagaagagtagaacattgatagtttttatatatctccaggtaattttaatatataactggggtgagaatcattgACGTAATTGTGAGAGGATAATATTCAAGAAATGTGGAGATAAATAATTTTCTTCTCGACATTAAAAAAATCTAATAAAAAGTTTTATCTTTTCCCCTAACTCAGGGTCATCAGCCTTCAAGCTTCAGTCTCTGTGTGTTCACAGGTGCTGTAAACACACACATCATTACTAATATCCCACTTCAGTGCTATTGCTGCTCCCAAAACTCCAGGTATTTTTAACCTTATAAACCTCCAGAATAATGAGACCACTGGGTTCAGTAAATTGCTTTGTTTTGAAGCAGTATTAGACAAAGTGGGAGACTAGAAGATAAATCTGTCAATGACATGTCCTTTAAGACTACTTAGATTTTGTTGAATTTGTGGATCATTCCTTACTTGAGCAAATGGTAAATTAACTCTCTCTTTTCTCTCTCTCTCTAGCTGGCACACTTTTTCCAGTAGCCATTCTACTTGGTATGCTTACTTATCAGCTGTCCTCCACGGGCCTCACATTAGATGTTTCTCTTGACTAACCAAACATGACACACAGCTGAAGTCAGAAAAACCAGATTGATAATTTCACTCAAACTATTTTCCTTCATTCTAACAATTTACTGGAGTACACAATTGTGACTATTTTTAGCCATAGGAACTCATAGAAAGACCTACTTCATTAGACCTACAAAATCGAAT

TGTGTAACAGTATATGCAGTATGTGTAGGAATAAAAAGCATTTCTCAAATATGCAGTACTGGATTTTGCAAAAGCACCTTACACTTAGCTATAAAGGAGTGGAAAACACAAAGATGAGTAACTGCACCTTTCAAAAGACTAGAGCTATACCAATAATACAAAGATGTAAACAAATAATGATGAGATGACAAAGGCTGAGTGTTTTCTATTTGGAAGTTATGTTGTTGAATTATTTATGTATATAATTTCATGCAATCTTCATGTTATGGgggtgttctaatccactgtgactctgtccttaaataaaagggagatttggacatagagagaggcacacggggaggatgccatatgagaattgacactgtgctgtcacaagccaaggaactactggaaggagagaaagaggactggaacagttccttccttagcaccttttcaggcagcctagccctgccagcttcttgatctggacttctcacctctagaattgtgaggcaataaatctctgttgcttaagttacccagtttgtggtactctattacaggagccctaggaaaataattcaTTATataatctgctaaggtagatatgatcattgtctccaatttccatatgaagaaactatgcctcaggcattgtgtcggttgtccaaaatcatacattcctgactcacttcaatgaattcttcattcagcaaaatttttaaggtaccttaaaaaaattatgttaactcttaggtccttgctttaaagcttcaatgggcttttcctttgcaaagaataaaatcctaatactcaagcatagctctctttcctggctatgtttctgacatcctcttgtaccatgctcctccttaatcattctgaggttacatcttaagtcctttccccttgccattcccacttcttggaatactttcccatcaactcttcaaagaactggcatctttaagtatttggtctcagttcaaatgtcacttccctgt

aaaagcttcctggccatcaagccttctttacacactctattttattttttcatggttcctataacaacctaatatattctcaattgattaactgttttgctgactactgccttccataagaatggaaAGAAAACATggccagatgcagtggctcacacctgtaatcccaccacttcaggaggctgaggcaacatggcaaaaccttctcttcaaaaaattttttaaaagttagctggatgttgtggaggcaagaggatcacttgaggatcacttgagtccatgaggtcaaggctgcagtgagtcatgtttgcaccactg

+
+a score=94883
+s hg18.chr1             98374 1036 + 247249719
cactctagcctaggtgacagagctagtcactatcaaaaaaaaaaaaaaaa---gaatggagagaatgctacatgagagaaaggatcttatctatcatgttcacctcccaagaggtgaacatatcccccaaagcctgatagagagaagatgctcattaatatttaatgcatgaCCATGTGCAGACTTGGGAGGAAAAATATGCCTCAGCCTATCAATATTGGATCCTTAATAAACAAGGATGTTTCTGCATCATTTCCCCACAACACCGAACAAGTGTGGCTCACTGTGGATGTTTAAGCAAATGCATTGTTTTTCCAGTTATATATCTGGTAGAGATGAGGCCATTGATAGGAATGGGAAGACGATCTCCTTTTATTTTGATGACCCAGCATGGCTGAACACTCAGTGACTACCACTGCACTTTGTTGTACTTTCAGCATTAGAGATGCCAGCCCTGTAGGATATAAAACAGGAACATCTAGTCCTCAATTATATTCAGAATTACTCAAGTCTTAGAAGCACCACTTGTCTTTTTTCAAGGGAGAGAAATGCTCAAGTGATGGGCTGAAGTGAAGGGAGGGAGTCACTCACTTGAACGGTTCCCTTAGGCTGTGTGGATGCAAACAGCATTAGACAATGACACTGACAGTGGGAAATGCACTGGAGACGATGACTGGCAAAGCCCTCCTTTTCTCCCCATCCACTATAGATACTGACAGCAAAGGGTTTGTCACAATGACAACTATACACTCCCAATATCACAGAAGAAGGAGGAATAAAAGGGTATATTATGAGTGACTGAAGTTTAGAATAAATTAATAAATATTATGTCCCTCATCCATAGAAACCACAAAGGTCTAGTAAGGCTAAGGATATAACAAGAAAATAATATGAATATTTGCTTCCCCTTCCTAGTGTAATAGAGTAAGTTACAAATGGCTT

CAGGAAGGGGAGAGAGGAAGAAGAGTGGATGAGATACGTAAGAGTGCTTGAGGGCTAATTTTATGAAAGCTTTGGGAAGTTTTAAGAAAAAGAAAAG

+s panTro2.chr1_random 7095288 1039 +   9420409
cactctagcctaggtgacagagctagtccctatcaaaaaaaaaaaaaaaaaaagaatggagagaatgctacatgagagaaaggatcttatttatcatgttcacctcccaagaggtgaacatatcccccaaagcctgatagagagaagatgctcattaatatttaatgcatgaCCATGTGCAGACTTGGGAGGAAAAATATGCCTCAGCCTATCAAAATTGGATCCTTAATAAACAAGGATGCTTCTGTATCATTTCCCCACAACACCGAACAAGTGTGGCTCACTGTGGATGTTTAAGCAAATGCACTGTTTTTCCAGTTATATATCTGGTAGAGATGAGGCCATTGATAGGAATGGGAAGACGATCTCCTTTTATTTTGATGACCCAGCATGGCTGAACACTCAGTGACTACCACTGCACTTTGTTGTACTTTCAGCATTAGAGATGCCAGCCCTGTAGGATATAAAACAGGAACATCTAGTCCTCAATTATATTCAGAATTACTCAAGTCTTAGAAGCACCACCTGTCTTTTTTCAAGGGAGAGAAATGCTCAAGTGATGGGCTGAAGTGAAGGGAGGGAGTCACTCACTTAAACGGTTCCCTTAGGCTGTGTGGATGCAAACAGCATTAGACAATGACGCTGACAGTGGGAAATGCACTGCAGACGATGATTAGCAAAGCCCTCCTTTTCTCCCCATCCACTATAGATACTGACAGCAAAGGGTTTGTCACAATGACAACTATACACTCCCAATATCACAGAAGAAGGAGGAATAAAAGGGTATATTATGAGTGACTGAAGTTTAGAATAAATTAATAAATATCATGTCCCTCATCCATAGAAACCACGAAGGTCTAGTAATGCTAAGGATATAACAAGAAAATAATATGAATATTTGCTTCCCCTTCCTAGTGTAATAGAGTAAGTTACAAATGGCTT

CAGAAAGGGGAGAGAGGAAGAAGAGTGGATGAGATACATAAGAGTGCCTGAGGGCTAATTTTATGAAAGCTTTGGGAAGTTTTAAGAAAAAGAAAAG

+
+a score=182569
+s hg18.chr1     99410 2041 + 247249719
CTATTTTTCAAGGTACAtgtgtgtatgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgAAAGACAGAAGAAAGAGGGAGACCTTAGAAGACTATGAGACACTAAGAGAAAAATTAAGGTAAAAAAGACACACACTTAGAAAAACACACATAGGGAGGAGGGAGGAGGTTAAGACATTTTACTATGTGCTGTGAATGGAAACTACAAACCATTTTTGATatatgcaatatatatacatatatacacacatatacatatGTATTTAAATATTTAAATTACAttttctctttttttagagatatggtttcactatgtcactctgcccaggctgcagtacagtggttgttcacagtcatgatcatagcacattatagccttgaactcctgggctcaagcaaccctcctgtattagtctccccagtagttgggattactagcatatgccaccatgtccACCTTTATGCTTTTTAAAGTGAAAAACCATACTAAGAATGAGGCAGCTCAACTTAATAATAAAAACATTTCAAATGtaaagaaatttacaaaagaaaaacaatcaaccccattaaaattgggcaaagggaatgaacagacacttttcaaaagaatacatgcatgcagccaacaaacatacaaaaaaaaagttcaacatcactgatcattagagaaatgcaaatcaaaaccataatgagataccatctcacaccagtcagaatagctatcattaaaaagtcaaaaaataacagatgctagtgaggctatggagaaaagggaatgcttatacactgttgttgggtgtgcaaatcagttcaatcattgtgcaaggaa-agtgattcctcaaagagctaaaagcagagctaccattcgacccagtaatcccactactgggtatatacccagatgaatataaaccattctaccataaagacacatgcatacaa

atgttcattgcagcactgttcacaatagcaaaagtatgggatcaacctaaatgcccatcaatgacagattggataaagaaaatgtggtacatatacaccatggaatactatgccgccattaaaaaatgatatcatgtcttttgctggaatatggatggaccttctattatccttagcaaactaatgcaggaacagaaaaccaaatacagcatactctcagttataagtgggagctaaatgatgagaactcatgaacacaaagaataaaacagacactggggtctacttgagggtggagggtgagaaaaggaagagaaacagaaaagataactattgggtactaggtttaatacctgggtgatgaaatgatctgtacaataaccccctgtgacaccagtctacctatgtaacaaatgcccctaaacttaaaataaaagtt-aaaaaaaaaAGAAAATTAAAATCTCCTTATCATCTACCTGGTAATATGAAAAACACATATCTTTCATTCATTCCTTTCAACTGATGAGGAAACTGAGGCATTGGGAGTTAGTAAAAGTCCACATTGAGATATGAGACCCACCACTggctggacacagtggctcacacctgtaatcccagcactttgggaggccgatgctggtggatcacctaaggtcaggagttcgggaccaggctggccaacatggtgaaacccccatctctactaaaaatacaaaaattagctgggtgtggtggcaggcacctgtaataccagctactagggaggctgaggcaggagaatcgcttgaacccaggaggtggagtttacagtgagccaaaatcatgccattgcactccagcctgggcaacaagagcaagactctgtcggggaaaaaaaaaaacaaaaaaaaCCACCACCATCATTTTGCAAGTGTTACCACTATTGTGTGTTAATATTGTAGAAGTATTCCTAATTATGATTTCTTTGTATTCCTAATTGTAATAGCTT

TGTATTTGAAAAATTATTGATTCATACTC--TATGTTATTATTTTGTATGCGATGACAACAGAATATATTATCATGCTCCTTTTGTGAATCTCATTCATAATATAA

+s panTro2.chr1 246632 2037 + 229974691
CTATTTTTCAAGGTACAtgtgtgtacgcgtgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtg----AAAGACAGAAGAAAGAGGGAGACCTAGGAAGACTATGAGACACTAAGAGAAAAATTAAGGTAAAAAAGACGCACACTTAGAAAAACACACATAGGGAGGAGGGAGGAGGTTAAGACATTTTACTATGTGCTGTGAATGGAAACTACAAACCATTTTTGATatatgcaatatatatacatatatacacacatatacatatGTATTTAAAGATTTAAATTACAttttctctttttttagagatgtggtttcactatgtcactctgcccaggctgcagtacagtggttgttcacagtcatgatcatagcacattatagtcttgaactcctgggctcaagcaatcctcctgtattggtctccccagtagttgggattactagcatatgccaccatgtccACCCTTATGCTTTTTAAAGTGAAAAACCATACTAAGAATGAGGCAGCTCAACTTAGTAATAAAAACATTTCgaatgtaaagaaatttacaaaagaaaaacaatcaaccccattaaaattgggcaaagggaatgaacagacagttttcaaaagaatacatgcatgcagccaacaaacatac-aaaaaaaagttcaacatcactgatcattagagaaatgcaaatcaaaaccataatgagataccatctcacaccagtcagaatagctatcattaaaaagtcaaaaaataacagacgctagtgagtctatggagaaaagggaatgcttatacactgttggtgggtgtgcaaatcagttcaatcattgtgcaaagaatagtgattcctcaaagagctaaaagcagagctaccattagacccagtaatcccactactgggtatatacccagatgaatataaaccattctaccataaagacacatgcatacaa

atgttcattgcagcactgttcacaatagcaaaagtataggatcaacctaaatgcccatcaatgacagattggataaagaaaatgtggtacatatacaccatggaatactatgccgccattaaaaaatgatatcatgtcttttgctggaatatggatggaccttctattatccttagcaaactaatgcaggaacagaaaaccaactacagcatactctcagttataagtgggagctaaatgatgagaactaatgaacacaaagaataaaacagacactgggttctacttgagggtggagggtgagaaaaggaagagaagcagaaaagataactattgggtacaaggtttaatacctggttgatgaaataatctgtacaataaccccctgtgacaccagtttacctatgtaacaaatgcccctaaacttaaaataaaagttaaaaaaaaaAAGAAAATTAAAATCTCCTTATCATCTACCTGGTAATATGAAAAAAACATATCTTTCATTCATTCCTTTCAACTGATGAGGAAACTGAAGCATCGGGAGTTAGTAAAAGTCCACACTGAGATATGAGACCCACCACTggctggacgcagtggctcacccctgtaatcccagcactttgggaggccgatgctggtggatcacctaaggtcaggagttcgggaccaggctggccaacatggtgaaacccccatctcttctaaaaatacaaaaattagctgggtgtggtggcaggcacctgtaataccagctactagggaggctgaggcaggagaatcgcttgaacccaggaggtggagtttacagtgagcgaaaatcacgccattgcactccagcctgggcaacaagagcaagactctgtcgggaaaagaaaaa---aaaaaaaaaCACCACCATCATTTTGCAAGTGTTACCACTATTGTGTGTTAATATTGTAGAAGTATTCCTAATTATGATTTCTTTGTATTCCTAATTGTAATAGCTT

TGTATTTGAAAAATTATTGATTCATACTCTATATGTTATTATTTTATATGCGATGACAACAGAATATATTATCATGCTCCTTTTGTGAATCTCATTCATAATATAA

+
+a score=51978
+s hg18.chr1            101451 561 + 247249719
AGTATAAATTTGTGATTTTGCTTTAATTTGAAATATTAATTTCAAATATGTTATCACAATTTGATACAAACTATTGACAGTAAATCTGTGGATTAAGTAATGTCTTAGTAGGTATTGGGAAAATTTGAAACTAGTAACATGGAGGACTATTGTCATTGTTTATTTCAAAGCCAGTTAAAATTCTGCAAAGCAGTGTACATAAAAATAATTTCAAGAAATTTATAAAATACCGAGATTACGGTGTATAAACAACTTTAGATTCTTTGTTTAAGAAATTCTGCCAGTTTGTAATATATGCTTCATTCAAAGTAGCTAAGGGCTGTACCTGGCTAATAGTAGGCACCTAATATTTGTTGAAAAGGAATACTGAGTAGCTGGGACCTCCTGAGTAGCTGGGACCACACACATTTAACCTGTATTTATAAAATTACTGTTTAGAGAATAACATTTGATGGAATCATGCTTTTACTTTCTGCTTACGACTCAATTGTTTGTactgacattaacatcccaaatccttagcatggcctacaaggccctgagcaatgtggcacctgctga

+s panTro2.chr1_random 7109461 561 +   9420409
AGTATAAATTTGTGATTTTGCTTTAATTTGAAATATTAATTTCAAATATGTTATCACAATTTGATACAAACTATTGACAGTAAATCTGTGGATTAAGTAATGTCTTAGTAGGTATTGGGAAAATTTGAAACTAGTAACATGGAGGACTATTGTCATTGTTTATTTCAAAGCCAGTTAAAATTCTGCAAAGCAGTGTAAATAAAAATAATTTCAAGAAATTTATAAAATACCGAGATTATGGTGTATAAACAACTTTAGATTCTTTGTTTAAGAAATTCTGCCAGTTTGTAATATAtgcttcattcaaagtagctaagggctgtacctggctaatagtaggcacctaatatttgttgaaaaggaatACTGAGTAGCTGGGACCTCCTGAATAGCTGGGACCACACACATTTAACCTGTATTTATAAAATTGCTGTTTAGAGAATAACATTTGATGGAatcatgcttttactttctgcttatgactcaattgtttgtactgacattaacatcccaaatccttagcatggcctacaaggccctgagcaatgtggcacctgctga

+
+a score=669341
+s hg18.chr1    102012 7363 + 247249719
agcctgctgcctcatttaataactctttgtctctttcccagatccagccactctaacattttttagctcctggaccaagacaagctcttcccagaacctgacctttgtacctgttctttattcctggagtatttttcccctgacaaattacttatcatctatcataattcaggttaaatggcactaactcagggaaggcttccctaactgcctcccttctccaaccaaattaggaacaattatatggccacatagtatcgaatcaagtttataattttaaaataattgggagattttgttgtttaacacttgttttcactataagactgtaattacatgcaagtaagaaccatgcctgtttgttcactcctgccacagtcagaatagtgcctggaatatgcagtaagggctgaacaaacactaaataaatgaaCAAGTGAATAAATGGATATTGTCTCATTTTTAGAACAGAGTACTAAATGGATCATGAACACTATCTGGTATGTCACGTAGGTAATTTACAAGGGCTACAATTTCAGCTCAGATTTACCTTTTCCTGGATACAGGTCTTGATAGGTCTCTTGATGTCATTTCACTTCAGATTCTTCTTTAGAAAACTTGGACAATAGCATTTGCTGTCTTGTCCAAATTGTTACTAAGAATCAAGAGAGATATCTGACATGAAATGACATTGGAAAACATTAAACACGATTGAAATAATGCTAGCCAATATGGTTATTATTAGAAACCAATTACATTTTCAACTTAAAAATAGTAATACTTATTGCAGACTCAAATGTGCTTATTCTAAAACAAGTAAATGTTTGCCTATGGTCTGAGATTCTAATCCACGGAGTTCATTCTAATCCACATTCAACACTATCATGTACCAGTGGGCCTCATAACCCACCTAGCCCTGTGATTTTTCAGGTTCACTTTTCTAAACTTGT

GAATTAAATATTTATTTTCTTAGTTCAGAAGAGGAAAAAAACTCTTGTAATTGTTGCCCATTTCAGGAGAAATCTTGCATATGAAAACAAGAGATAAATATACACAACTGAGGGCTGTGGTTTAAACAAAATCTTGAGAATGTTTTTTGACCTTATACATTTGTGCTTTAGTATAACAAAATGATATAGACAAAGGTAACTTTTAATAGAACCAGTCACTACATTAAAAAAA-TGACAAATTCTTCTGCTTAGCTAAGCAACAGAGAAGGTAAAATACTAATTCAATTCATCAATTTAAGCAATACTCATTAAGAGCCAAGTATGTGCTCACTGAATAAGCTGCTAAGGTTTGGTGGTTACAGAGTGTGCGGTGAAATGATGTCTACATCACAGTCCAACATTCACAGAGTTTAAAAGCCTACCAAGAATCAAGACAGACACAAATACCTAACATAGACGTTTGTATATGATAAGAGAGCCAGAGTACAATTTAGGAGAAGAAATTGTATGGAAGGAAGGTTCATTTCCATTAGACCAGAAAAGACAGCACATTTGAAGGCCTGAATAAGAAATATTCTGGATAAGATATTGTggctgctaccagaatggctcttgatgatctctacctcttggtatttatacccttatataatctctttcctatagtgtaagctggtcccaggtacttgtttctattgaatagaatagaacaaaagaaatgagatgccacttctgagattagtttataagatactgtgaatttcatcttgtgccctctccctctctctctttctcttgccctctcatttgaatgaagccaactggcatgctgtcagtggcacagtgtaagtcctgttacaagaaattgacgattacctgtagccaaccctaagtgaagaactgaggtcctcagtcctacaaatggagagaaactgaatctagctaagaaccatgtgagtgagctgggaagaagatccaccctcagttg

aaatttaagatgaCATATTGAGCAGACATACTGAGACACACTGAAAGTAAGAGAGCAGGAGGAAACAAAACCAGGGTCATACAAAGAACACAACTGATTTTGAGATTCTCACATaagtattacaccttcagtgagcacgtgtactagaaatttaaaaaataaataaaataaaccttcaaagtgagctagcaaataaatttccctatggtctcagctctgagtggagagagaaaatgttccctgtggagtttatagccagaatccagctctcaaacaggtttcagcctgaactcacacaatctgtgtggcttccaaatttgcaagctgagaatttaattcaaagtggtctcaggttgatagcagtccaaaatgctaggtaggaaaaaaaatcctctctggacaaataaatcatcaaagcaagctcataagagcaggtttcaaaggtcatgagcttctaacacacacacacaaaaatcacacacacaaaatgggggtagcagcaacatgggtagcgtattcaaacttgaaaagactttaaatatttgtattattagatgtagattatgaaacacatattttAATGTGGTTAATTTTTTTAAGGAATCACAACTATGAGTAAAGACCAAGAAAATTGTGCTGGATGGCCACTTCCACCATGGCTCCCCTCCTATTTAAGTCTGGGTACTGTGTCACCCGAAGTCTTCAGGCACATTGTTCCAGGTCTGGGTTTGCCTATGAAAGAAACTCATGAGAGCTGGAAATGAGGAGTGAAGAGGAGGTCTTCACATAAAGCAGGCTTAAGGATTAGACATAGCAGGTTTGACAGATGTGATGGCTTGCAGAATCCTTTATGAGCTCCCACTGTCCATCTGGATAAGATTTACAGACCTTTCAGAAATTCCTATAAGCTTGGGTTCTGTGCCCACACTCTAGACTGTCAGGCTAAGATCTCTGATATAAAACAGACCTCTTCTGATTTTGTCTAGCTG

CTTTTCTAATATCTATTCACCAAGCTCTTCCAATAATAGCATAAGGCCCTAATTAATATTAAACTTTTATCATTATAATACATAGGATGTCTTCTGTTTTCCTGATCAAATTCTGACTACTATTAAAATATAAAGAATTGTCCAGAAATATATAAAAAAAGAATCACACATTGATCTTCTTTAAATGAAAATATAACAATTGTATGGACTAGGATGATTACAGTTGTTCAGTTCTGACTGTTATTTGAAGAAAAAAGCAATAAGAAgcctcagcaacttaacagaaggagctgccatttactaggagaaaagattgtggatgagagtgtagcaaaggtcagaattctgtgaagcttgagatgtttattaTAATGAATTATCTTTTATACTCACTACAATTTCCTAACAATTTTGGGGTTTATATTTTTGAAAGAGATATACCTTTAATTTTCTTTCTTTGTACTATTGTTAGGTAACTTTAATGTGCAGATTATACTACAgtgaaagttgccaatgacaaggcaaagtcacttacatcagacccaaagcaaagtggagccgggtcatgaaaaaggggatcttgtgtgtctgtccacgataagcactatcacaaggactttctataaactcacaagaaaTTTCTGCCCACCCAGCACACA--GTTTGTCCAGCTCATCCTGTAGGTGTCTCTATAATAGGACCTATCATAAAAAAttcctcaagactgcagcatttcagataagccaccctcacaagaacacttgcctagcaatggctgtttctgccagtaagttaacaccagctcctgcatcagaccctgtgaccaatgatgtttgtttcaaaacagcttgcatggacttctttttgtctttacatattttccttacctcaacctcttgggatgcacctatgattgatcatagcacaaatatctcagattataatccttgtttatttccaaataaatttatttctttggagatccactt

tttctgTTATTATACATTGACATTGTTAttatgaaattggttgggtgatgtgtcttattttcttgtctccagaagaatttctgtaacagtgcaattaaacgttctttgcatgtttgctagaactcacctgtaaaattgtctgagcAACCAAAGCCTGGTTTTTGTGTTTAGTTTTTCTTTTGTGATTGGGGAGGGGGGTTTATCGTACTGATTCAAGGTGTGAAGGTAACATCATTTTGATTTTATACATCTTCTTCAGTCCATTTAAGCATGTTACATAGCGTTGTTTGTTCTTTTCATGATATTCTTtacagtagtctcctaaatgttccctctgattctg-----------------------------ccatgagcccctacaatctatttcaactcagaagctatagagtttgtttaaaacatgtaacatattatgccacctttcttactgtaaaacatcccatggtttctcatagtatttatagtaaaagtgaaatttttatgatggcctgagaaacttttcccattagatgcccaagtgctggtctggtctgatcttctcatcttcccttgggtgattctgtggcagtcacactagcctccttgctgctccacaaaaactccagcatgatcctacttcaggatatttgccattgttactgcatctgcctggaaccttttctcccatataaacatagagattgctcttgcctgtccttcaagtctattcttaaatgtcccattctctgtgaagctttcctgcccaccctatttaaattacagacttcactcccaattccccatctactttaagagtcttcatttatcattccttgacaaactgtaaatatacatgttcacttttttatcgtctgtctccaaatactggaatgttaagttctgtaatgtcagatatttctgtttggttcactggtgtattcttaaagcatgttacatactaggtatactcaatgaatatttgtt

gaataaatatcacattgggcttattccagaaattcaagcttgtttcaatagttagagcaatctacaaatgtaattcattacattaactaattaaaggagctaaatcacatcaccaccacaataatgcagaaaaccacatttgatacaactcaatattcatgtctgcctaacaaacatctcatgatactaggaaaagaggaagggatatattattttcatgtataaagcactaaccattgtagcatgccaatatactcaaaattcaatgaaattcctatcaaaatcttagcattcctcttagtcctcaacaaagcatttctaaaatgtgtatagaagaccaaagggccaaaagagtcaacttctgaagaagcgcaaaaagaaagttgaggaaatcttaaaacatgttattgagcttaaagttgcaaaaataaactcatgtaccataattcatgagtagaaaaatagactagtggaataacataaaaataaaaacaatgcttacataaaatgttgtaactgatttggatgtcattagaaatcagtaagtaaatagatggacaatgtaatgaaagatgctaggcaaatAAtgtggtagggagaataatggccctcaaagatgcccatgcctaaccctggaacctgtgaatatgttacactgaatgcaataaaggcttatcagatgtgattaaggatgcaaaccgagatggagagatcttcctgggttacccagatgggcccagtctaatcacatgagttcttaaaaatggagaacctttcttagctgagtccagagagagatgtgacaatgaaagaatggtcagagaaatgtgacattgccagctttaaaaagagagaggagaggcaatgagaaaaggaatgctgatgttctctagaagatagaaaaggccaggatatggattctaccctagccaccataaagaaacatgcctgtcgacaacttgattttagttcactaaaattcatgcctg

atttctgacttgtgtacactgtaagatgacaagtttgtgttattttaggtcacttagtttgtagaaatttgttacagcagtaatagaacaagtggttatccatatgaggcaaattagattggatacctatctccaatagaaatcaattcaaggtgaattccaggaaaatacttaaaacatttagattaaaaataaatgagaatttttgttacttttggtaggtcatagaaccaagaaaaacaaacattaaggaggaaaaatgaacatatgactacatcaaaatataaagcttctctatttggaagatatcataaggtgacaaatcataaactgtaatatttacaacatatatataagtgaataaatatacatttagaatatatatgaactcccaaaaatcaacaggaaaaataagacatagaacaagcaaaatgcataaacaaaagaaggcaaaacaaaaataatgactcataattatatgaaaagaagctcatcttcatagatgagcagataaatgcaaattaaaaccaccctgagatgctttttacatccatgagcctgataaaagttagagtctaaaagtaataa----caaagatgggaagtaatagaaaatcttgtccattactggttaaagtataaactgatacagctactttatagaatattacattatagaataaagttgtgagtatgtatatgcagtgactcagcatattcattgctagtatgtactcaagagaaacttacaggagtggactaggaagtaaatacaaaatgattacaacattgtttgttatatcaaaaaataaaaaagacacccaattttccagcaaaaaaaataagtaaaaataaatcctggtgtattctaacaatggaataatatatagccattaaaataaatcaactattactgtacatatgaatgtaaatatcagcaaaacatattgtttagtgaaaaactaagaagctgaagaagaatatataca

atatggttacatttatatgaagtccaaaaacttgcaaaataaagaaatgtatttagaaatagattcacatgtgagaaaactagaagaaaattaatgaaaggataagagggatagcagtaattctgagtagttgagggaaTTTCAATTGGAAAAAAATAATATCATATTCTTTAAGTCAGGTAGTGGGTATTAGCATTTGTTTTACCATCGTTCTTTATTCTTATAGCTACACTATATATTTTCAATGTATTTAATGTATTTTTTGCATAATTAAATATTATGCAATAAAAATGAGAAAACAAAAAAGTAGAAAATGATAAATTACAATAAAGAAATGGAGAAAAAATTATAATCTAGTTGAGTAATGGTATATTACATAGCTATTTTCTTAAGTAGATGTATGTACATGATGTATGCACGATTGTACATACATGTTCttaattatatataaatatatatgtacatatttttaatataaaataCTAAACAAAGTACACCAAAATATTAGCTCCTAT

+s panTro2.chr1 248901 7392 + 229974691
AGCCTGctgcctcatttaataactctttgtctctttcccagatccagccactctaacattttttagttcctggaccaagacaagctcttcccagaacctgacctttgtacctgttctttattcctggagtatttttcccctgacaaatgacttatcatctatcataaatcaggttaaatggcactaactcagggaaggcttccctaactgcctcccttctctaaccaaattaggaacaattatatggccacatagtatcgaatcaagtttataattttaaaataattgggagattttgttgtttaacacttgttttcactataagactgtaattacatgcaagtaagaaccatgcctgtttgtttactcctgacacagtcagaatagtgcctggaatatgcagtaagggctgaacaaacactaaataaataaaCAAGTGAATAAATGGATATTGTCTCGTTTTTAGAACAGAGTACTAAATGGATCATGAACACTATCTGGTATGTCACGTAGGTAATTTACAAGGGCTACAATTTCAGCTCAGATTTACCTTTTCCTGGATACAGGTcttgataggtctcttgatgtcatttcacttcagattcttctttagaaaacttggacaatagcatttgctgtcttgtccaaattgttactaagaatcaaaagagatatctgacatgaaatgacattggaaaacattaaacacgactgaaataatgctagccaatatggttatTATTAGAAACCAATTACATTTTCAACTTAAAAATAGTAATACTTATTGCAGACTCAAATGTGCTCATTCTAAAACAAGTAAATGTTTGCATATGGTCTGAGATTCTAATCCACGGCGTTCATTCTAATCCACATTCAACACTATCATGTACCAGTGGGCCTCATAACCCACCTAGCCCTGTGATTTTTCAGGTTCACTTTTCTAAACTTGT

GAATTAAATATTTATTTTCTTAGTTCAGAAGAGGAAAAAAACTCTTGTAATTGTTGCCCATTTCAGGAGAAATCTTGCATATGAAAACAAGAGATAAATATACACAACTGAGGGCTGTGGTTTAAACAAAATCTTGAGAATGTTTTTTGACCTTATACATTTGTGCTTTAGTATAACAAAATGATATAGACAAAGGTAACTTTTAATAGAACCAGTCACTAAATTAAAAAAAATGACAAATTCTTCTGCTTAGCTAAGCAACAGAGAAGGTAAAATACTAATTCAATTCATCAATTTAAGCAATACTCATTAAGAGCCAAGTATGTGCTTACTGAATAAGCTGCTAAGGTTTGGTGGTTACAGAGTGTGCAGTGAAATGATGTCTACATCACAGTCCAACATTCACAGAGTTTAAAAGCCTACCAAGAATCAAGACAGACACAAATACCTAACATAGACGTTTGTATGTGATAAGAGAGCCAGAGTACAATTTAGGAGAAGAAATTGTATGGAAGGAAGGTTCATTTCCATTAGACCAGAAAAGACAGCACATTTGAAGGCCTGAATAAGAAATATTCTGGATAAGATATTGTGACTGCCAccagaatggctcttgatgatctctacctcttggtatttatacccttatataatctctttcctatagtataagctggtcccaggtacttgtttctattgaatagaatagaacaaaagtaatgagatgccacttctgagattagattataagatactgtgaatttcatcttgtgccctctccctctctctctttctcttgccctctcatttgaatgaagccaactggcatgctgtcagtggcccagtgtaagtcctgttacaagaaattgatgattacctgtagccaaccctaagtgaagaactgaggtcctcagtcctacaaatggagagaaactgaatctagctaagaaccatgtgagtgagctgggaagaagatccaccctcagttg

aaatttaagatgGCATATTGAGCAGACATACTGAGACACACTGAAAGTAAGAGAGCAGGaggaaacaaaaccagggtcatacaaagaacagaactgattttgagattctcacataagtattacaccttcagtgagcacgtgtactagaaattaaaaaaataaattaaataaacctacaaagagagctagcaaataaatttccctatggtctcagatctgagtggagagagaaaatgttccctgtggagtttacagccagaatccagctctcaaacaggtttcagcctgaactcacacaatctgtgcggcttccaaatttgaaagctgagaatttaattcaaaatggtctcaggttgatagcagtccaaaatgctaggtaggaaaaaaaatcctctctggacaaataaatcatcaaagtaagctcataagagcaggtttcaaaggtcatgagcttctaacacacac-caaaaaaatcgcacacacaaaatgggggtagcagcaacatgggtagcatattcaaacttgaaaagactttaaatatttgtattattagatgtagattatgaaacacatattttaaTGTGGTTAATTTTTTTAAGGAATCAAAACTATGAGTAAAGACCAAGAAAATTGTGCTGGATGGCCACTTCCACCATGGCTCCCCTCCTATTTAAGTCTGGGTACTGTGTCACCCGGAGTCTTCAGGCACATTGTTCCAGGTTTGGGTTTGCCTATGAAAGAAACTCATGAGAGCTGGAAGTGAGGAGTGAAGAGGAGGTCTTCACATAAAGCAGGCTTAAGGATTAGACATAGCAGGTTTGACAGATGTGATGGCTTGCAGAATTCTTTATGAGCTCCCACTGTCCATCTGGATAAGATTTACAGACCTTTCAGAAATTCCTATAAGCTTGGGTTCTGTGCCCACACTCTAGACTGTCAGGCTAAGATCTCTGATATAAAACAgacctcttctgattttgtctagctg

cttttctaatatctattcaccaagctcttccaataacagcatgaggccctaattaatattaaacttttatcattataatacttaggatgtcttctgttttcctgatcaaattctgactACTATTAAAATATAAAGAATTGTCCAGAAATATATTTTAAAA--ATCACACATTGATCTTCTTTAAATGAAAATATAACAATTGTATGGACTAGGATGATTACAGTTGTCCAGTTCTGACTGTTATTTGAAGAAAAAAGCAATAAGAAgcctcagcaacttaacagaaggagctgccatttactaggagaaaacattgtgggtgagagtgtagcaaaggtcagaattctgtgaagcttgagatgtctattaTAATGAATTATCTTTTATACTCATTACAATTTCCTAACAATTTTGGGGTTTATATTTTTGAAAGAGATATACCTTTAATTTTCTTTCTTTGTACTATTGTTAGGTAACTTTAATGTGCAGATTATACTACAgtgaaagttgccaatgacaaggcaaagtcacttacatcagacccaaagcaaagtggagccgggtcatgaaaaaggggatcttgtgtgtgtgtccacgataagcactatcacaaggactttctataaactcacaagaaaTTTCTGCCCACCCAGCACACTCTGTTTGTCCAGCTCATCCTGTAGGTGTCTCTATAATAGGACCTATCATAAAAAAttcctcaagactgcagcatttcagataagccaccctcacaagaacacttgcctagcaatggctgtttctgccagtaagttaacaccagctcctgcatcaggccctgtgaccaatgatgtttgtttcaaaacagcttgcatagacttctttttgtctttaaatattttccttacctcaacctcttgggatgcatctatgattgatcatagcacaaatatctcagattatagtccttgtttatttccaaataaatttatttctttggagatccactt

tttctgTTATTATACATTGACATTGTTAtcatgaaattggttgggtgatgtgtcttattttcttgtctccagaagaatttctgtaacagtgcaattaaacgttctttgcatgtttgctagaactcacctgtaaaattgtcagagcAACCAAAGCCTGGTTTTTGTGTTTAGTTTTTCTTTTGTGATTGGGGAGGGGGGTTTATCGTACGGATTCAAGGTGTGAAGGTAACATCATTTTGATTTTATACATCTTCTTCAGTCCATTTAAGGATGTTACATAGCGTTGTTTGTTCTTTTCATGATATTCTTTACAGTAGTCTCCTAAATGTTCCCTCTGCTTCTGTTgtctcctaaatgttccctctgcttctgccatgagcccctacaatctatttcaactcagaagctatagagtttgtttaaaacatgtagcatattatgacacctttcttactgtaaaacatcccatggtttcttgtagtatttatagtaaaagtgaaatttttatgatggcttgagaaacttttcccattagatgcccaagtgctggtctggtctgatcttctcatcttcccttgggtgattctgtggcagtcacactagcctccttgctgctccacaaaaactccagcgtgatcctacttcaggatatttgccattgttactgcatctgcctggaaccttttctcccatataaacatagagattgctcttgcctgtccttcaagtctattcttcaatgtcccattctctgtgaagctttcctgcccaccctatttaaattacagacttcactcccaattccccatctactttaagagtcttcatttatcattccttgacaaattgtaaatatacatgttcacttttttatcatctgtctccaaatactggaatgttaagttctgtaatgtcagatatttctgtttggttcactggtgtattcttaaagcatgttatatactaggtatactcaatgaatatttgtt

gaataaatatcacattgggcttattccagaaattcaagcttgtttcaatagttagagcaatctacaaatgtaattcattacattaacaaattaaaggagctaaatcacatcaccaccacaataatgcagaaaaacacatttgatacaactcaatattcatgtctgcctaacaaacatctcatgatactaggaaaagaggaagggatatattattttcatgtataaaacactaaccattgtagcatgccaatatactcaaaattcaatgaaattcctaccaacatcttagcattcctcttagtcctcaacgaagcatttctaaaatgtgtatagaagaccaaagggccaaaagagtcaacgtctgaagaagtggaaaaagaaagttgaggaaatcttaaaacatgttattgagcttaaatttgcaaaaataaactcatgtaccataattcatgagtagaaaaatagactagtggaataacataaaaataaaaacaatgcttacataaaatgttgtaactgatttggatgtcattagaaatcagtaagtaaatagatggacaatataatgaaagatgctaggcaaatAAtgtggtagggagaataatggccctcaaagatgcccatgcctaaccctggaacctgtgaatatgttacactgaatgcaataaaggcttatcagatgtgattaaggatgcaaaccaagatggagagatcttcctgggttatccagatgggcccagtctaatcacatgagttcttaaaaatggagaacctttcttagctgagtccagagagagatgtgacaatgaaagaatggtcagagaaatgtgacattgccggctttaaaaagagagaggagaggcaatgagaaaaggaatgctgatgttctctagaagatagaaaaggccaggatatggattctaccctagccgccataaagaaacatgcctgtcgacaacttgattttagttcactaaaattcatgcctg

atttctgacttgtgtacactgtaagatgacaagtttgtgtgattttaggtcacttagtttgtagaaatttgttacagcagtaatagaacaagtggttatccatatgaggcaaattagattggatagctatctccaatagaaatcaattcaaggtgaattccaggaaaatacttaaaacatttagattaaaaataaatgagaatttttgttacttttggtaggtcatagaaccaagaaaaacaaacattaaggaggaaaaatgaacatatgagtacatcaaaatataaagcttctctatttgaatgatatcataaggtgacaaatcataaactgtaatatttgcaacatatatatgagtgaataaatatacatttagaatatatatgaacttccaaaaatcaacaggaaaaataagacatagaacaagcaaaatgcataaacaaaagaaggcaaaacaaaaataatgactcataattatatgaaaagaagctcatcttcatagatgagcagataaatgcaaattaaaaccaccctgagatgctttttacatccgtgagcctgataaaagttagagtctaaaagtaataattaacaaagatggcaagtaacagaaaatcttgtccattactggttaaagtataaactgatacagctactttatagaatattacattatagaataaagttgtgagtatgtatatgcagtgactcagcatcttcattgctagtatgtactcaagagaaacttacaggagtggactaggaagtaaatacaaaatgatgacaacattgtttgttatatcaaaaaataaaaaagacacccaattttccagcaaaaaaaataagtaaaaataaatcctggtgtattctaacaatggaataatatatagccattaaaataaatcaactattactgtacatatgaatgtaagtatcagcaaaacatattgtttagtgaaaaa----gaagctgaagaagaatatataca

atatggttacatttatatgaagtccaaaaacttgcaaaataaagaaatgtatttagaaatagattcacatgtgagaaaactagaagaaaattaatgaaaggataaaagggatagcagtaattctgagtagttgaggggaTTTCAATTGGAAAAAAATAGTATCATATTCTTTAAGTCAGGTAGTGGGTATTAGCATTTGTTTTACCATCATTCTTTATTCTTATAGCTACACTATATATTTTCAATGTATTTAATGTATTTTTTGCATAATTAAATATTATGCAATAAAAATGAGGAAACAAAAAAGTAGAAAATGATAAATTACAATTAAAAAATGGAGAAAAAATTATAATATAGTTGAGTAATGGTATATTACATAGCTATTTTCTTAAGTAGACGTATGTACATGATGTATGCACGATTGTACATACATGTTCttaattatatataaatatatgtgtacatatttttaatataaaataCTAAACAAAGTACACCAAAATATTAGCTCCTAT

+
+a score=132031
+s hg18.chr1    109375 1459 + 247249719
GTTAGTGAGATAATGTTTTGTTTTTTTGTATTTTAAGTTTTACATAGTAGGtgtatttttctgttttcatactgctataaagaactgcccaagactgggtaatttataaaggaaagaagtttaattggctcaccgttcagcacagcttgggaggcctcaggaaatctacaatcatggcggaagacaaagaggaagcaagccagcttcttcgcaaggcagcatgaagaagtgccgagcaaaggggaaagaatcccttataaaaccatcaaatctcgtgagaactcactatcacaagaacagcacaggggaaactgcccccatgattcaattacctccacctggtctctcccttgacctgtggggattatggggactatggggattacaattcaagatgagattcaggtggggatacaaagcctaaccatatcaGTAGGCATGTATTGAATTTTAAACTCAGAGAAAAATACTAGTGTTTTT-ATAGGATTCTTACTAAAGAAAAACCAGAAAGTAATAAACCATCTACGCTAAGACATAAAATTCAGTTGTTTAGTTACAAGATAGAATGTGGCCTTGTAAGAAAGCAAATTAACTTCTAACATACAAAGCCTTAGAGAAGATTCAAGTGACTGACGGATCTTAAACAGAGCTATTATTACAACTCGAACTGCAGTAAAATATCCTCAGCAACATAGATGTGTGTGTTTCACTAGTCAGAGCAATACAAATTTAATGAAACTCCACTGGTGGTGTTTTTAATCAGACAATTTCTGAAGATGTCCTGGCTTATTCACAGATGCAAGCCAAATCTCTAGAAGAGTACCATAATAAGAAAAAAAAGAATACAGGCAATTGAGAGCTGTTCCAAAGTTTAGGGAGTTTTTGTAAGGAATTAATAAATAAAAATGTTCTTGAAAGACAGAAATTAATATGCAGTTCATACTGTCAG

AATTGCAGGCAATTTATCAAAGTCCCCTAATCCTCCAAAATCGCTATTTTTTTTTTGACACACACTTTACAGTACAGAAGAAAATGTCTCCGGCAATAAATCACAAAGTTAAAATTACCTAGTCTACAATTAACTACACAGTGATGGTAAATCATTTTCTACCAAAAGAAAGAAATGTCTTGTCTATTCAGGTTCTGCTCTACTTAAAAGTTTTCCTTGTTGGCGAGCAAGTGGTTAGAAAATTATATTTTATACGTACATTCAGCTTAACTATCATTCAGCTCAGGAAGATGACTCAGGGCCTTATCCATACCTTCAAGTTTGCTCTTAGCAAGTAATTGTTTCAGTATCTATATCAAAAATGGCTTAAGCCTGCAACATGTTTCTGAATGATTAACAAGGTGATAGTCAGTTCTTCATTGAATCCTGGATGCTTTATTTTTCTTAATAAGAGGAATTCATATGGATCAGCTAGAAAAAAATTAAGAGGAAAATCACATGGAAAGttat

+s panTro2.chr1 258082 1456 + 229974691
GTTAGTGAGATAATGTTT-GTTTTTTTGTATTT-AAGTTTTACATAGTAGGtgtatttgtctgttttcatactgctataaagaactgcccaagactgggtaatttataaaggaaagaagtttaattggctcacagttcagcacagcttggaaggcctcaggaaatctacaatcatggcggaagacaaagaggaagcaagccagcttcttcgcaaggcagcatgaagaagtgccgagcaaaggggaaagaatcccttataaaaccatcaaatctcgtgagaactcactatcacaagaacagcacaggggaaactgcccccatgattcaattacctccacctggtctctcccttgacctgtggggattatgggggctatggggattacaattcaagatgagattcaggtggggatacaaagcctaaccatatcaGTAGGCATGTGTTGAATTTTAAACTCAGAGAAAAATACTAGTGTTTTTTATAGGATTCTTACTAAAGAAAAACCAGAAACTAATAAACCATCTACGCTAAGACATAAAATTCAGTTGTTTAGTTACAAGATAGAATGTGGCCTTGTAAGAAAGCAAATTAACTTCTAACATACAAAGCCTTAGAGAAGAATCAAGTGACTGACGGATCTTAAACAGAGCTATTATTACAACTCAAACTGCAGTAAAATATCCTCAGCAACATAGATGTGTGTGTTTCACTAGTCAGAGCAATACAAATTTAATGAAACTCCATTGGTGGTGTTTTTAATCAGACAATTTCTGAAGATGTCCTGGCTTATTCATAGATGCAAGCCAAATCTCTAGAAGAGTACCATAATAAGAAAAAAAAGAATACAGGCAATTGAGAGCTGTTCCAAAGTTTAGGGAGTTTTTGTAAGGAATTAATAAATAAAAATGTTCTTGAAAGAGAGAAATTAATATGCAGTTCATACTGCCAG

AATTGCAGGCAATTTATCAAACTCTCCTAATCCTCCAAAATTGCTA--TTTTTTTTGACACACACTTTACAGTACAGAAGAAAATGTCTCCGGCAATAAATCACAAAGTTAAAATTACCTAGTCTACAATTAACTAGACAGTGATGGTAAATCATTTTCTACCAAAAGAAAGAAATGTCTTGTCTATTCAGGTTCTGCTCCACTTAAAAGTTTTCCTTGTTGGCGAGCAAGTGGTTAGAAAATCATATTTTATACGTACATTCAGCTTAACTATCATTCAGCTCAGGAAGATGACTCAGGGCCTTATCTATACCTTCAAGTTTGCTCTTAGCAAGTAATTGTTTCAGTATCTATATCAAAAATGGCTTAAGTCTGCAACATGTTTCTGAATGATTAACAAGGTGACAGTCAGTTCTTCATTGAATCCTGGATGCTTTATTTTTCTTAATAAGAGGAATTCATATGGATCAGCTAGAAAAAAATTAAGAGGAAAATCACATGGAAAGTtat

+
+a score=195249
+s hg18.chr1    110834 2199 + 247249719
atattatatatctattatatataatatatatctattacatat--tatatattgtatatctattacatatatattatatatgtattatatatattatatattatatatgtattatatatattatatattatatatctattatatatataatattatatattatatatCATTTCCAAATTCCCCAGCGTTCATATTTGTCAGTGCAAGTAAAGAGCCTTACTGCTGATGAGGTTTGAGGTATGACCATTTGGCCAGAATTTATGAACTCTACATGTCGCTTGATGTGTGCCTCAGGGTATACttttttttttttttt---gagacggagtcttgctctgtcgcccaggctggagtgcagcggtgcgatctcagctcaccgcaagctccgtctcccgggttcacgccattctcctgcctgagcctcctgagtagctgggactacaggcgcccgccactatgccctgctaattttttgtatttttagtacagacggggtttcaccgtgttagccaggatggtctcgatctcctgacctcgtgatccacccgcctcggcctcccaaagtgctggaattacaggtgtgagccaccacgcccggccAGGGTACACTTTTAAGCAGAGACACTACTTTGAAGGTCATAAAAAATATAATAAGAGATAAGGCTAATTTCCtttaataataataa------aatcctttaataaaaatataaaggaataatataataattttctttaataaaatataataaGAGATAAGGCTAATTTCCTTTAATAAAATATAGTAACTACATACCAACAGAATTCCAAAAAAAGAAATGGAGAGGAAGGGAGCATGGGTCATTAATCTTGTCAAAAATATAAAATTATATACGAGGAATTCCTAGAAACTGTTTTCCTTGTCTGCGGCCATTGTGCTGCTGCTACACAACTACCGCAAGCAGCCCTTCA

CGCCCTCCTCCCAGTACAAAGCTAATTGACTTGTGAGAAATGTTAAGCTTGGAAGAGTCAGCATCACTGCACTTATTTTTTATTCTACTCTGACATTAGAATAATCCTTGAGTGGGGGAAAGGTTAAAAACCCCCCTGGATAAGTGTTACTAATTAATGATGATTGTTTTAAACAATGTTTGGATAATTTTTCCTTGTCCCTTGACATAAACTTGATAAATAACTGAGAAGTGAGAAGGAGATTAGTGGGTTGATTAAATTCCATTCAGGTACTTAAAGTTAGCTCCAAAAATTTAGCTATTTGTAAATTGTCATGCATTGTTAATGTATAAGAGATGTAGATTTCATTTATCTTTGGTGGAGCGAGATGAAGCAGTGAATCATTGAAGACTGAAAGAAAGAAAAAGGTCTTTTCCCTTTTCTTTAAGAAGCATCATTAGTTAAAAACATGTTAGTTGATACCAGAGAACTATATTTAAAGGGACAGCAATAAGCAAATTGATTACTCTGGTGATTATTGGAGTGACATTGCCTTTTAGTTGTACTTTCACAAAAATTCACAATATTTGCCAAAGTCAAGTTATCCATTACACTATTAATTTGTCATTCTTTTGTTTATATAGTCAATATCTCTATCTCAATTGGATCTATCTCAACTGCTTCTAAACAAGCCACCATAGTCTCTCCCATTTCAACAATCTCTTCCAAGTACCACTTCATTTCTTCTTTTCATATTTTTGAAAACTTTTGAAAAACTACCTATTTTCCTCCTCCATTTCTTGTTCATTCCATTCTAGTGGACATGGAATCTGTTCCTCCTCCAAAACGGAATTTGGTAACCCTTAAATTACTAAACCCAAAACAATATGTTGTCTTTATCTTTACCTCTCTGTGGCATTTAATGATAAGACCACTACTTTCTTCTCTTTTACCCTTCTTTCTTGAATTCAGTCAGACAACGTACTTACATTTTTCGTCTTATTCTCCAT

CTTAGAAACCACCTCAGCTTTCTCCATTCAGCTATAAAATTGTGCTTTTCCTCAAAGATTAATCTGCCTCTCCTCTCACTCTATACTATCTCTGTTAGCTAATTTTATTTGTGCACATTGCTTATACTGGGCATTATATACACATATGCATGTGTGTACATGTGCACACACACACTGTATGTGGACatgtatatatatatatgtgtgtgtgtatatatatagtatatatataAATTACAATAACATAAAGGTGGCATTTTAAATTAGTGGA

+s panTro2.chr1 260178 2182 + 229974691
atattatatatctattatatataatagatatctattatatatattatatattgtatatctattacatatata------------------------atattatatatctattatatatattatatattatatatctattatatatataatattatatattatatatcATTTCCAAATTCCCCAGCGTTCATATTTGTCAGTGCAAGTAAAGAGCCTTAGTGCTGATGAGGTTTGAGGTATGACCATTTGGCCAGAATTTATGAACTCTACATGTCGCTTGATGTGTGCTTCGGGGTACACttttttttttttttttttgagacggagtcttgctctgtcgcccaggctggagtgcagcgatgcgatctcagctcaccgcaagctccgtctccctggttcacgccattctcctgcctgagcctcctgagtagctgggactacaggcgcccgccactatgccctgctaattttttgtatttttagtacagacggggtttcaccgtgttagccaggatggtctcgatctcctgacctcgtgatccacccgcctcggcctcccaaagtgctggaattacaggcgtgagccaccacgctcggccAGGGTACACTTTTAAGCAGAGACACTACTTTGAAGGTCATAAAAAATATAATAAGAGATAAGGCTAATTTCGtttaataataataataataaaatcctttaataaaaatataaaggaataatataataattttctttaataaaatataataaGAGATAAGGCTAATTTCCTTTAATAAAATATAGTAACTACATACCAACAGAATTCCAAAAAAAGAAATGGAGAGGAAGGGAGCATGGGTCATTAATCTTGTCAAAAATATAAAATTATATACGAGGAATTCCTAGAAACTGTTTTCCTTGTCTGTGGCCATTGTGCTGCTGCTACACAACTACCGCAAGCAGCCCTTCA

CGCCCTGCTCCCAGTACAAAGCTAATTGACTTGTGAGAAATGTTAAGCTTGGAAGAGTCAGCATCGCTGCACTTATTTTTTATTCTACTCTGACATTAGAATAATCCTTGAGTGGGGGAAAGGTTAAAAACCCCC-TGGATAAGTGTTACTAATTAATGATGATTGTTTTAAACAATGTTTGGATAATTTTTCCTTGTCCCTTGACATAAACTTGATAAATAACTGAGAAGTAAGAAGGAGATTAGTGGGTTGCTTAAATTCCATTCAGGTACTTAAAGTTAGCTCCAAAAATTTAGCTATTTATAAATTGTCATGCATTGTTAATGTATAAGAGATGTAGATTTCATTTATCTTTGGTGGAGTGAGATGAAGCAGTGAATCATTGAAGACTGAAAGAAAGAAAAAGGTCTTTTCCCCTTTCTTTAAGAAGCATCATTAGTTAAAAACATGTTAGTTGATACCAGAGAACTATATTTAAAGGGACAGCAATAAGTAAATTGATTACTCTGGTGATT-TTGGAGTGACATTGCCTTTTAGTTGTACTTGCACAAAAATTCACAATATTTGCCAAAGTCAAGTTATCCATTACACTATTAATTTGTCATTCTTTTGTTTATATAGTCAATATCTCTATCTCAATTGGATCTATCTCAACTGCTTCTAAACAAGCCACCATAGTCTCTCCCATTTCAACAATCTCTTCCAAGTACCATTTCATTTCTTCTTTTCATATTTTTGAAAACTTTTGAAAAACTACCTATTTTCCTCCTCCATTTCTTGTTCATTCCATTCTAGTGGACATGGAATCTGTTCCTCCTCCAAAACGGAATTTGGTAACCCTTAAATTACCAAACCCAAAACAATATGTTGCTTTTATCTTTACCTCTCTGTGGCATTTAATGATAAGACCACTACTTTCTTCTCTTTTACCCTTCTTTCTTGAATTCAGTCAAACAACGTACTTACATTTTTCGTCTTATTCTCCAT

CTTAGAAACCACCTCAGCTTTCTCCATTCAGCCATAAAATTGTGCTTTTCCTCAAAGATTAATCTGCCTCTCCTCTCACTCTATACTATCTCTGTTAGCTAATTTTATTTGTGCACATTGCTTATACTGAGCATTACATACACATATGCATGTGTGTACATGTACACACACACACtgtatgtggacatg--tatatatacatgtgtgtgtatatatatatagtatatataAAAATTACAATAACATAAAGGTGGCATTTTAAATTAGTGGA

+
+a score=17777
+s hg18.chr1       113033 202 + 247249719
aattaccctgatttgatcactacacattctatacatgtaaagaaaatatcactctgtatcccaagaatatgtacaattatggtttgtcaaatgaaaaAGTTCATACATTGAAAAATTTTAGATAAATATCAAACTTTCTCTGAAACTGTAACTGTAAAATGTAAAAAACAGTAATTGCTATATTGCTTATTTCTGAGTAGAA

+s panTro2.chr1 224022798 201 + 229974691
aattaccctgatttgatcactacacattctatacatgtaaag-aaatatcactctgtatcccaagaatatgtacaattatggtttgccaaatgaaaaAGTTCATACTTTGAAAAATTTTACATAAATATCAAACTTTCTCTGAAACTGTAACTGTAAAATGTAAAAAACAGTAATTGCTATATTGCTTATTTCTGAGTAGAA

+
+a score=3621
+s hg18.chr1            113251 39 + 247249719 CCTAATCATTATGTGTAATTACAATTACATATATATATG 
+s panTro2.chr1_random 1172673 39 -   9420409 CCTAATCATTATGTGTAATTACAATTACATATATATATG 
+
+a score=4427
+s hg18.chr1       113290 49 + 247249719 TAATTGTAATTACACATAATGATTAGGGAAATGTCTCATATTCTATATA

+s panTro2.chr10 95659061 49 - 135001995 taATTGTAATTACACATAATAATTAGGGAAATGTCTCATATTCTATATA

+
+a score=46693
+s hg18.chr1            113339 531 + 247249719
TATAGACAGAAAGAGAGAAAATATATGAGGGAGAGAAGGAATCTTTCCATCTCCTTTGAGTTCCACGGTGTTGAGAGTCAGGACAACTGCAATTGCTTCATCATGCCTGCTTGCAATTATAGGGCTTTTGAACCATTTGTTCCCTCCTTAGATATCCTCATTTTTTTCAGATTCTTGCTTAGAAGTCACTCCTCCGTGGACCTCCTCTGACATATTAAACATTGCAGTCCATtataagctgcaagaggacagggatttttgcctgttttattccctactgtatcaccaggggctagagcaatatctgacaaacagtgggcatgtaatgaatatttgttaagtgaaGTAATAAATTCaatcaaatcacatcacctgtttaaagcacttcattggcttcacattgcacttagaataaagagaaattctttttatacaatatacaatatattttatacaatataagttcctgcagaatgcagacactttctacttctccagcctcttttcgactcctctcctactagcttctgt

+s panTro2.chr1_random 1172712 510 -   9420409
TATAGACAGAAAGAGAGAAAATATATGAGGGAGAGAAGGAATCTTTCCATCTCCTTTGAGTTCCACGGTGTTGAGAGTCAGGACAACTGCAATTGCTTCATCATGCCTGCTTGCAATTATAGGGCTTTTGAACCATTTGTTCCCTCCTTAGATATCCTCATTTTTTTCAGATTCTTGCTTAGAAGTCACTCCTCCGTGGACCTCCTCTGACATATTAAACATTGCAGTCCATtataagctgcaagaggacagggatttttgcctgttttattccctactgtatcaccaggggctacagcaatatctgacaaacagtgggcatgtaatgaatatttgttaagtgaaGTAATAAATTCaatcaaatcacatcacctgtttaaagcacttcactggcttcacattgcacttagaataaagagaaattct---------------------ttttatacaatataagttcctgcagaatgcagacactttctacttctccagcctcttttcaactcctctcctactagcttctgt

+
+a score=20908
+s hg18.chr1       113870 240 + 247249719
atttaagccatattagacctttcttcagttttttatatagactttgtcgcatcacacctcagagattctgtacatgttcttcctcctgcctagaaaggatcgtccctccacttttgccaactaatccctgctcaacttttcatctcagcaggaggcccattctctttggcaatcctctggcctccagcccatttattatatgctcacatgtcaacatgtacttcgtacagcatgtaacac

+s panTro2.chr1 224023740 240 + 229974691
ATTTAagccacattagaccattcttcagttttttctatagacttcgttgcatcacacctcagagattctgtacatgttcttcttcctgcctagaaaggatagtccctccactttcgccaaataatccttgctcaacttttcatctcagcaggaggcccattctctttggcaatcctctggcctccagcccatttattatatactcacacgtcaacatgtacttcgtacagcatgtaacac

+
+a score=390882
+s hg18.chr1    114110 4346 + 247249719
aattgcacttttatattttaacaaattatatttcccatattgaactgtaagtctcctgaaagcaggaattttgttcttgctcatcatcaactttttcaacatccagtgcaccatttagaacttagatgtagtcaatacaggtttgtggaatgaaagaGGAAAAGAAAGAATTAATATTCCTTTAAATTAGGATGGCAAAGATCGTATATAGAAAATTGGCTAAGTTGTGGTCCATTCATGTTTGCTCCCAATTAAGGAGCACAGCTATGAAAAGGAAGGCTTCAAATTAATAACCAATAGATTTTTTTAAAAAGAAAACTggccaggtactgtggcttatgtctgtaatatcagcatgttgggaggccaaggcaggattacttgagcccagaaattccagaccagcctgagaatttggcaaaactctgtctctacaaaaaatacaaaaattagccaagtttggtggcatgtgcctgtagtaccagctacttgggaggctgaggtggaagaatagcttgagtctgggaggtcaaggctgcaatgagctgtgattgcaccactgcactcaagcctgggtggtagagtaagaccctgtctcaaaaaaaaaaaaaaaaaaagaaaaaTCACTAAGCAAAATAAGACATGTGAAGGATCATGTCAAAGGAAAGAAAAATTAGGGGAACATTAAAAGCTTTCTTCCCAAGCCACTAAATCAACTTGACTAACAAAATTACCACTTGATTTAGTATTAGAAAATTACATTACATATCAAACATAAACCCATTAATCAAATACTAAAGAAATTTCTGAGTTAAATGGTATAATGTTAGCTTATGCCAGAGCTGACCTTGAAAGATTGTTCAAATATGGCTCAGTGTGATTGAAAGTTCTGTGTGAATATGTTTTTGGAAAGATCCAACAGCAACACCTTAGTGTATGTTTTTGAAATA

AAATATATCTGAGTAGCAGCAAAGTTATTCTCAAATTTCCATTTTATAGCTGGAGATGTTATACCGTGACGTACATGATAGGACCCAATATGGATCAATCCCTTTTAGAAGTCAATCAGGAAGAGGGGAGCAGTTAAAACAGTTGCTTGGTTTACAAACATTAGAACAATTTTCTTATTCACACCATCTGATTATTGTATGTTATTTTTTCCCCAACGTTTAGACTACACAATGAGTTAAGAATGATAAAAATAAGCTCACCAATATACTATGTACATATTTACCAAAATCTGTGCATGCTTATACATATAAACACAGCTGATAATTTATTAGTTAGGCTCATTTGTAATTTTTGTCACTATAGACCAGTTTTTTATTTAAATTGAAGATTAGTATACATTTTAAATGATTAGTCAAAATAAAAAATCTAAAATGTGCTCTAAATACCTCTTAGGTCAG-AAAAAAAAAGTCAAAAGCTAGAGTATAGAGAAATTAAGAAACGCCCTAAATTTCTAATCTGACAAAAATTCATACAAGATTTAAATATTTTAATGGAAAATAGAACAGAACTAATTATTGAAGAAATTATAGAAAGGAAACAAAATAAACAGATTATATGGAGGATTTTTAGAAGATAAGTAAATAAATTAATATACTAGGAAAAAACAAGGGAAATATACTTGATAAATAAATACAGGTAAGAGTTCTTTTGAAATAATGATAAAATAGAAAATCTCTGTCAAAACTAAAAGGAAAGATGCATAAATATATAAATAAACGATAAAA-AATGTTGCATACATATATGACTTTTTCAGAATCAAAAAATTTAAATTTCTGtaataaaatttaaatgtttataaatttaaaaaactagaagaaagaatgttgactgttcacaatacaaataaatgacaactatttgaggtgatggatacgctaattatccttatttgatcactgggcattgtatacatgtatcaaaatatc

actctgtatcccatgaatatgtacaattatttgtctcaaaaacaaacaaaaAaaagataatgggagaatgttgaaaactcagagagaagagcaactctcacagatagggatccagataacattagcagctgatttctcagcagaaaccttgaaggccagtaggcagtggattatatatttaaaataatgaagaaacctgtcaattgagaaatatatagctggaaaacttatccttcaaaaatgaaggagaaattaagacatttccggatttttttttaaaactg-aaaaaaatccatttatccctgaatttgacattcaggaagtgttaagtccttcaggttgaaataaatgaactctaggcaataactatataagtaaataagcaagctgtatgaatatacaaagctctctggtaaaggtaaatacataaacaaacataaaaacagtcctattgtaattttggtttgtaactctgctttttattttctacataatttaaaaggcaaatgcataaaatgtaattgtaaatctgttagctggtatacaatgaataaagatataatttgtcacatcaataacataaaaagagtagagctatatatatagcagtagaattttggtatgtgattgaacttaagttgaaataaattcaaattaaaatgttataactctaggatgttatatgtaattctcatagtaaccaaaaatgaaatatacatagaatataaacaaaaggaaatgagactagaaacaaaatgtgtcactacaaaaaaatcaactaaagataaaaaagaaataattgagaaaatgattggcaaaaaTCAGTAACTCTGACGTATTAAAACTTTCCATGCTACATAAATCTGAAAACTCTATTTCACATAAAACTGGAGCTGAAAGAAACAAATATTTACCTATAAAGTTAAAAGTTATATAGGGAACAAACACtaattttttttagaaaaaattataaaaaGAGTAAAAATAT

GCCTTATACTACCGTAATTTCATGTTTTACAGCTCTGGGAAAATAGAAAATAAAATGTTCTGTTAGCATGAATCCCTCTGTGCCCCCAAAAAACCCTATGGATTGCATCATTATTACCTAAAAAGTCTATTCTCAAATGCAGCAGAGTGATATTTTTTACAAGGTAGATATTAATTTTAGATATGGAATAATATTGGTGATTTCAATTTTATAACACTGGGTTAAGATGAAAGAATGAGAAGATAAAGGTCCCTCAGCAATATAACTCACAAACATGTTCAGAAGCAGTAAGAAGTTACATTAATTATCTTTTGAAAGTCGATAATCTACATCTTTAATGTATGCATATAGCATAGCTAATGTACTATCCCTGGGtccatttattcaatgaataattgccgctatgtgtcagacatttttctaggcctaggaatggatacataagtgaacaaagcaaagattctggttcttgtagagtttccattaaaagacaatTTAGTAAAACTTTTCTTCCCCCAAATTATAAAATCTGTAAGATGATTTAACAACATGTGTAAAAGTCATTGTGGGCCAGGCACGGTGGCTCATACCAGGTGTGGTGACTCATAGcactctgtcacccaggatggagtgcagtggcacaatctctgctcactgcaacctctgcctcctgggtacaagcgattctcctgcctcagctttctgagtagcaaggactacaggtgcacaccatcacgcctggctaatttttgtactattagtacagacggagtttcaccatgttggccaggctggtctcgaactcctgacctcaaatgatccatctacctcggcctcccaaagtgctggaattacagatgtgagccacaatgcccggccTTATTTTCTACAACTTTGGTAACTTTAGCATATACCCCAAATCTGTAAGACATAATATTATAATTCAAATGCAACTCATGGCTTCTCTTTGTACTCTTTCTCTAGCTTTT

GAATTATTTATTCTAATACCAGTTTTAATTCTGACACAAAATCATGGGAGTTCTAATCAAAATCCAACCTTTTATCATAAAAACTATGAAGAAATTATGAGTAGAATTTAAAAAGGAAAATAGGCCTATTAATTAGATTTGTCTTTGTAGCATTTAACTCTATAATAA-----ATAATATTTTATGCCTATGAGTCCCCAACAAAGCCTCCAGCTTCTATTTAGATATAAACTGTAAAAGTCACTACTGGATCCACAAGCAAGACTATGGTAAATAAATTTCTCCACCTAACCAGCTTCTTTTACATGATGTTACATGTTTCTTTTGTTTTttcattttggcaaatattgattgtcatcttcgtgtttgtctatgtcctaagtgctgggatacagaatctgaaaagatggacacaggacctgccttcaagttcaccc

+s panTro2.chr1 262360 4344 + 229974691
AATTGCACTTttatattttaacaaattgtatttcccatattgaactgtaagtctcctgaaaggaggaattttgttcttgctcatcatcaactttttcaacatccagtgcaccatttagaacttagatgtagtcaatacaggtttgtggaatgaaagaGGAAAAGAAAGAATTAATATTCCTTTAAATTAGGATG-CAAAGATCGTATATAGAAAATTGGCTAAGTTGTGGTCCATTCATATTTGCTCCCAATTAAGGAGCACAGCTATGAAAAGGAAGGCTTCAAATTAATAACCAATAGATTTTTTAAAAAAGAAAACTggccaggtactgtggcttatgtctgtaatatcagcatgttgggaggccaaggcaggattacttgagcccagaaattccagaccagcctgagaatttggcaaaactctgtctctacaaaaaatacaaaaattagccaagtttggtggcatgtgcatgtagtaccagctacttgggaggctgaggtggaagaatagcttgaatctgggaggtcaaggctgcaatgagctgtgatcgcaccactgcactcaagcctgggtggtagagtaagaccctgtctcaaaaaaaaaaaaaaa----gaaaaaTCACTAAGCAAAATAAGACATGTGAAGGATCATGTCAAAGGTAAGAAAAATTAGGGAAACATTAAAAGCTTTCTTCCCAAGCCACTAAATCAACTTGACTAACAAAATTACCACTTGATTTAGCATTAGAAAATTACATTACATATCAAACATAAACCCATTAATCAAATACTAAAGAAATTTCTGAGTTAAATGGTATAATGTTAGCTTATGCCAGAGCTGACCTTGAAAGATTGTTCAAATATGGCTCAGTGTGATTGAAACTTCTGTGTGAATATGTTTTTGGAAAGATAAAACAGCAACACCTTAGTGTATGTTTTTGAAATA

AAATGTATCTGAGTAGCAGCAAAGTTATTCTCAAATTTCCATTTTATAGCTGGAGATGTTATACCGTGACATATATGATAGGACCCAATATGGATTAATCCCTTTTAGAAGTCAATCAGGAAGAGGGGAGCAGTTAAAACAGTTGCTTGGTTTACAAACATTAGAACAATTTTCTTATTCACACCATCTGATTATTGTATTTTATTTTTTCCCCAACGTTTAGACTACACAATGAGTTAAGAATGATAAAAATAAGCTCACCAATATACTATGTGCATATTTACCAAAATCTGTGCATGCTTATACATATAAACACAGCTGATAATTTATTAGTTAGGCTCATTTGTAATTTTTGTCACTATAGACCAGTTTTTTATTTAAATTGAAGATTAGTATACATTTTAAATGATTAGTCAAAATAAAAAATCTAAAATGTGCTCTAAATACCTCTTAGGTCAGAAAAAAAAAAGTCAAAA-CTAGAATATAGAGAAATTAAGAAATGCCCTAAATTTCTAATCTGACAAAAATTCATACGAGATTGAAATATTTTAATGGAAAATAGAACAGAACTAATCATTGaagaaattatagaaaggaaacaaaataaacagattatatggaggatttttagaagataagtaaataaattaatatactaggaaaaaacaagggaaatataattgataaataaatacaggtaagagttcttttgaaataatgataaaatagaaaatctctgtcaaaacttaaaggaaagatgcataaatatataaatAAATGATAAAACGATGTTGCATACATATATGACTTTTTCAGAATCaaaaaatttaaatttctgtaataaaatttaaatgtttataaatttaaaaaactagaagaaagaatgttgactgttcacaatacaaataaatgacaaatatttgaggtgatggatatgctaattatccttatttgatcattggacattgtatacatgtatcaaaatatc

actctgtatcccatgaatatgtacaattatttgtctcaaaaacaaaCaaacaaaagataatgggagaatgttgaaaactcagagagaagagcaactctcacagatagggatccaggtaacattagcagctgatttctcggcagaaaccttgaaggccagtaggcagtggattatatatttaaaataatgaagaaacctgtcaattgagaaatctatagctggaaaacttatccttcaaaaatgagagagaaattaagacatttccggattttttttttaaactgaaaaaaaatccatttatccctgaatttgccattcaagaagtgttaagtccttcaggttgaaataaatgaactctaggcaataactatataagtaaataagcaagctgtatgaatatacaaagctctctggtaaaggtaaatacataaacaaacataaaaacagtcctattgtaattttggtttgtaactctgctttttattttctacataatttaaaaggcaaatgcataaaatgtaattgtaaatctgttagctggtatacaatgaataaagatataatttgttacatcaataacataaaaagagtagagctatatgtatagcagtagaattttggtatgtgattgaacttaagttgaaataaattcaaattaaaatgttataactctaggatgttatatgtaattctcatagtaaccaaaaacaaaatatacatagaatataaacaaaaggaaatgagactagaaacaaaatgtgtcactacaaaaaaatcaactaaagataaaaaagaaataattgagaaaa----tgGCAAAAATCAGTAACTCTGACGTATTAAAACTTTCCATGCTACATAAATCTGAAAACTCTATTTCACATAAAACTGGAGCTGAAAGAGACAAATATTTACCTATAAAGTTAAAAGTTATATAGGGAACAAACACTAATTTTTTTTAGACAAAATTCTAAGAAGAGTAAAAATAT

GCCTTATACTACCCCAATTTCATGTTTTACAGCTCTGGGAAAATAGAAAATAAAATGTTCTATTAGCATGAATCCCTCTGTGCCCCCAAAAAACCCTATGGATTGCATCATTATTACCTAAAAAGTCTATTGTCAAATGCAGCAGAGTGATATTTTTTACAAGGTAGATATTAATTTTAGATATGGAATAATATTGGTGATTTCCATTTTATAACACTGGGTTAAGATGAAAGAATGAGAAGATAAAGGTCCCTCAGCAATATAACTCACAAACATGTTCAGAAGCAGTAAGAAGTTACATTAATTATCTTTTGAAAGTCAATAATCTACATCTTTAATGTATGCATATAGCATAGCTAATGTACTATCGCTGGGtccatttattcaatgaataattgccgctatgtgtcagacatttttctaggcctaggaatggatacataagtgaacaaagcaaagattctggttcttgtagagtttccattAAAAGACCATTTAGTGAAACTTTTCTTCCCCCAAATTATAAAATCTGTAAGATGATTTAACAACATGTGTAAAAGTCATTGTGGGCCAGGCATGGTGGCTCATACCAGGTGTGGTGACTCATAGcactctgtcacccaggctggagtgcagtggcacaatctcggctcactgcaacctctgcctcctggatacaagcgatgctcctgccccagctttctgagtagcaaggactacaggtgcacaccaccacgcctggctaatttttgtactattagtacagacggagtttcaccatgttggccaggctggtctcgaactcctgacctcaaatgatccgtctacctcggcctcccgaagtgctggaattacagatgtgagccacaatgcccggccTTATTTTCTACAACTTTGGTAACTTTAGCATATACCCCAAATCTGTAAGACATAATATTATAATTCAAATGCAACTCATGGCTTCTCATTGTACTCTTTCTCTAGCTTTT

GAATTATTTATTCTAATACCAGTTTTAATTCTGACACAAAAGCATGGGAGTTCTAATCAAAATCCAACCTTTTATCATAAAAACTATGAAGAAATTATGAGTAGAACTTAAAAAGGAAAATAGGCCTATTAATTACATTTGTCTTTGTAGCATTTAACTCTATAATAAATAACATAATATTTTATGCCTATGAGTACCCAACAAAGCCTCCAGCTTCTATTTAGATATAAAATGTAAAAGTCACTACTGGATCCACAAGCAAGACTATGGTAGAGAAATTTCTCCACCTAACCAGCTTCTTTTACATGATGTTACATGTTTCTTTTGTTTTTTCATTTTGGCAACtattgattgtcatcttcgtgtttgtctatgtcctaagtgctgggatacagaatctgaaaagatggacacaggacctgccttcaagttcacCC

+
+a score=572998
+s hg18.chr1    118459 6270 + 247249719
tttttttttttttttgagatgcagttttgctcttgtcacccaggctggagtgtactggtgagatctctgctcactgcaacctccaccttcagggttcaagtgattctcctgcctcagcctcccaagtagctgtgattacaggtcccagccaccacgcctagctaatttttgtatttttagtagagacagcgtttcatcatgctggtcaggctggtctcgaactcctaacctcaggtagtcgacccacctcggcctcccacagtgctgagattacaggcatgagccaccacgccctgctaggagttcacgctttagttggggaaaatatacaataagcaagccagtttttaaaatgagaactgcaattagagttaaatgctacaaagacaaaCTCACAGGAAGATGGGATGTAGAATGATAAGGCTCTCAGAATAGTAAGAGAAACTATTGCTTCTTACGATGTTTGTCTTTCTTTGTATCGGTGCTCAGCTGAGTCTGCAGTGCTTCAGAGGCAGCTTTCATTTTATAAAAATCTATGATTTCTCCTTCCAGTTTTTTTTTCTCTTCCTCGAGCTTCCTTATCTCCTCCTGTTGAATCATTTTAAGATGCTCGAACTTGTCCTGCAGCTGTGAAACCAATGTGCAGTTGTGACACCAAAGCAGTGTGGCTGAACACCTAAAAGAATACGCTTTTTTTCTGATTATCAAACAAACCCAAATCATCACAGTAGACCACGATCTTAATAACAATCTCAAAAACTCAGGAGTAAACACTCAGATATGGAAtttttcttttctttcttttttccttttataagatggagtctcactctgttgcccaggctggagtgcactggtgcgatctcagctcactgcaacctccatctcccagttcaagtgattctcctgcctcagcctcttgagtagctgggactataggcatgcaccac

cactacaggcgtgtgccaccacacctggctaatttttgtatttttagtagagatggggttttgccatgatggccaggctggtctcgaactcctgacctcaggtgatcctcccgctttggcctcccaaagACtttttttttttttttaatatagagacaagttctcagtacgttgcccaggctggtctcaaactcctgagctcaagtgatcctcccacctcagcttcccaaagtgctgggactGActggatgcagtggctcatgcttgtaaactcagcactttgggaggccaaggtgggaggatcgcttgagcccaggagttcaagaccagactgggtgatataacACAATAGTCAACTTCaacaggagagagaatctgtaaacttgaatatagatcttccgaaattatccagtcagtggacagagaaaaaaagaataaaagagagaaaagaaggctgggtgtggtggctcaagcctgtaatcccaacactttgggaggccgaggcaggcagattaagaggtcaggagttcaagaccagcctgtccaacatgacaaagccccatctctactaaaaatacaaaaattagccgggtgtggtggcacacacctgtagtcccagctacttgggaggctgaggcaggagaatcgcttgaacccaggaagcggaggttggagtgcaatgtgagccgagaccacacattacactccagcctgggtgacagagcatgactctgtctcaaaaagaaaaaaa--------------aaagagacagagaaaagaaagccaacaagacaccattaagcaaaccattgtcaggttatgggagtttgagaaggaaagtagagaaaggagaataaagcttatttaaagaatggctgacaactgcctaaatcatgggaaagatttagacatctaaatccatgaagcttaaagattcctaaagaggttcaaaccaaatagatactcaccaagtcacaatataatca

aatagtcaaaagttaaagaaactttgcaggtcaggacagaatcgaataatacattcaaagtgctgaaagaaaaaaactgccagcaactaatactatgtctgacaaagctgtccttcagaaaggaaaaagaaataatgtgtttcctcgacaaacaaagctgagggcattcaggaccactaggtctaccttaaaaaaatgcttaacggagtttttcaagtaaaaatgaaTGAAGTTgggagcggtggctcatgcctgtaatcccattttgggaggctgaggtgggtggatcacctgaggtcgggaggtcaagaccagcctggccaacatggcaaaaccccacctccagtaaaaatacaaaaaattagccaggtatgaaggccactgagatcgtgccactgcactccagcctgggtgacaagagtcaaactacatttcaaaaacaaaaaacaaaacaaACAAAAAAAACAAAACTTGAGGCCTGGCCTTCTGCTCCTCTCCAACCTCCCCTTCTCTGGGCCCAAGCCACCTTGGCTGAGGAGGGGGCGAGGAGGTGTGAGCCCCTGCCAGGAACCCCCTGCCCGGACCAAGTGCTCGGCCCCCAGGCCTGCGTTCAGTGAGGCCTCCCGTGGCGTCAGCATGTTCGTGTGGAGGAATGTGGAAGGTCACTCTGCGGCCGTGTTCTCCTGGTACTCCATCCCCTTCCTGACCCCTCCCTGCAGCCACACGAGGCCCAGCAACCTGCCAGTCACTCAGTGGCCTCCAACCAGAGAAAACAACCTGCCAAGTTGGCAGCTGTTGCTCATGAGCGTCCACCAGGTGGGACAGGGAGTGTTGACCCTGGGCGGCCCCCTGGAGCCACCTGCCCTGAAAGCCCAGGGCCCGCAACCCCACACACTTTGGGGTTGGTGGAACCTGGTAAAAGCTCACCTCCCACCATGGAGGAGGAGCCCTGGGCCCCTCAGGGGAGTCCCTGCTGGACAGTGAGACAG

AGAATGACCATGATGATGCTTTCCTCTCCATCATGTCTCCTGACACCCAGTTGCCTCTACCACTCAGATGATGTCAGGCCCAGTCCCTCAGTGCCCTGCGCAAGGAACAGGACTCATCTTCTGAGAAGGATGGACGCAGCCCCAACAAATCAGACAAGGACCACATCCGGTGGCCCATGAGTGGCGCTCATGATCTTCAGCAGGCGGCACCAGGCCCTGGCGGGGCGCACCAGGGTCACCCCAACCAGGATAACCGGACCGTCAGCCAGATGCTGAGCGAGCGGTGGTACACCCTGGGGCCCAATGAGATGCAGAAATAC---AACCTGGCCTTCCAGGTGAAGGTGGCCCACTTGCAACAAGGACCGAAAGAAGTCCAGCTCAGAGGCCAAGCCCACAAGCCAGGGGCTAGCAGGAGTGTAACAAGGGCTCGTGGGAGCGGAGCATATCAGAGACGGGCACTGCCACTGCCCCTGGGGTGTCCTCTGAACTCCTGTCAGTTGCAGCCCAAACACTCCAGAGCTCGGATACCAAGGAGCAGCTTCTGTGGGGCAGAACGGCTGCACACAGTCAGGGAACCTGGCTCAGCCTGGCCCAAGCCTTCTCCCACAGCGGGGTACACAGCCTGGACGGCAGGGAAATAGACCGTCAGGCACTACGGGAACTGACACAGGTGGTGTCTGGCACTGCATCATACTCTGGCCCAAAGCCTTCTACTCAGCATGGAGCTCCAGGCCACTTTGCAGCCCCTGGTGAGGGAGGTGACCCGTGGGCAGCCCTGCTGCCGCCCACGTGAGCTGCTCATTCCCAGCACATGGCCAGCGAGGTCATAGCGAGTGACGAAGAGCACACGGTCATCCATGAGGAGGAGGGGGTGATGATGTCATTGCTGATGATGGCTTTAGCACCACCGACACCGATCTCAAGTTCAAGGAGTGGGTGACCGACTGAGAGTGGGGACAACTCTGGGGAGGAGCCAGAGGGCAACA

AGGGCTTTGGTGGGAAGGTATTTGCACCTGTCATTCCTTCCTCCTTTACTCCTGCCGCCCCTTGCTGGATCCTGAGCCCCCAGGGTCCCCCGATCCACCTGCAGCTTTTGGCA--GTCTATGGTCACACCCTGTCCTCCTCCTACACATACTCGGATGCTTCCTCCTCAACCTTGGCACCCACCTCCTTCTTACTGGGCCCAGGAGCCTTCAAAGCCCAGGAGTCTGGTCAACGCAGCAGAGCGGGCCCCCTACGGCCCCAACCCCTGGGGATGGGGGCCCAGGGACGCCTTCCAAGGTGGCCTGTTTCCTCCCAATGGATCCTGCCACCTTCTG-------GTGCAAGAGACCTGAAAGTGTGGGCGACCTGGAGCTACCAGGCTCCTCAGTCATCAGGGTCCCTCCCAACACTAAGGCTTTCCTAGGCAGGAGCTGGGCTGAGCCACCCGGGGGGCAGAGCCTGAAGAGAAACTGACTGGGCTTTCGGGGTCGGGGCAGAGGGAACCCCACGGACATGGACCCCACACTGGAGGACCCCACCGCGCCCAAATGCAAGATGAGAAGATGCTCCAGCTGCAGTCCAAAGCCCAACACCCCCAAGTGTGCCATGTGTGATGGGGACAGCTTCCCCTTTGCCTGTACAGGTGGAGAAGCCGAGGACAGGCTCAGGGAACCGGAGACCAAGAAGGCGCTGTCCTCTTCACTGCATGTACCCTGGACCAGTGCCGGCCCTGATCATGCAGCTCTTCCAGGCCCACTGCTTCTTCCTGTCCACTAGGCCACAGCCGCCCTCCAGGCCCACTATGCACACATCTTCCCCTCCAAGGTTTGTTCTGCCCCTGCCCTGACTCCCAGCCCTGTGGGGGTCCTGACCGCACCTCACCTGGCTCAGACTCTTGACGCTGCCCTGGCTGCCCCACCAGTGCTTCTGCCCGAGAGTCACGTGAGGCTGAGAGTAGGGGCAGGGGCAGCAGTGGTGCCAGTTG

GGGGGCGGTCCAGTGGGAGGAGCCTCAGCCTCGCAGGCTGCTCCGTGGGACTGATGACTGCATGATCTTCTGGGCACCTCACGGATCTTCAACTGCAGGTGAAACGGATGCTGGTGGTGGGTGCAGGGCCGCTGGGAGCTGCTGCATGGTTCCCAGAGGCTGGACTGAGGCAGGTGCCAACTGAAGCTGCTGGGGCAGCATGGGCAGGATGTTCTGCACACAAACCTTGGAGAAGAAGATGTGTGCATAGCAGGTCCACTGCTGCTGCCCCTGCCCTGACTCCCAGCCCTGCCTGACCCCACCTCAACCTGCTCAGGCTCTGGCACAACCCTGGCTGCCCTGCCACTGCCTCTGCCCCAGAGTTGGTGCCTTGACAGCCTGGTTGGAAGGGGACACCCCAGCCCTGCCTCAACACCTGGGGGTCTCCATAACTAGCACAGGCAGGTGGGCAACCCCAAAGATCCCAGGACTCACAGTACCCCCTGAGAACATGGACAGTATGTGGGGGTAGCAATGGAGGGCAGGATGGTTATCTTCTCCCAGGTGAAGCCATTTAATCCTTTCAGTTTGGGACGGAGTAAGGCC--------TTCCtttttttttttttttttttttttttttttgagaccgagtcttgctctgtcgcccaggctggagtgcagtggtgcgatcttggctcactgcaacctcttcccgctgggttcacgccattctcctgcctcagccttccgggtagctaggattacaggtggacgctaccacgtccggctaatttttgtatttttagtacagacggggcttcatcatcttggccaggctgatttcgatctcctgacatcgtgatctgcctgcctccccctcccaaagtgctgggattacaggcgtgagccaccacgcctggccAAGGCCTGCTCCTCTTATCTATACCCCCTACCCCTGCAGCTGTGCC-GGGGGAAAGCTGGGCAGTTTCCCTCCTCCGAGCCCC

TGTACATACCATGAATTGTGGGACCTTCAGAGCTTTTCACTTTTCGGAAAATAGCTCCTGCTGGGGCTACAAGATGGAGTGTGAAGAGGGCCTTGGGCCACAGGGAGGCGCCTGTGGACTAGGGGGAGTTCATGCACCCCTTCTTTCCCCAGAGGGGCTGGACTCAGGTGAGTATGGGGGTGGGGGCTCCTGCACTTCGACACAGGCAGCAGGAGGGTTTTCTCCCCATTCCCTCTGCACTCCCAACTTGAGCTATACTTTTTAAGAAAGTGATTCACCCTGCCTTTGCCCCCTTCCCCAGAACAGAACACGTTGATCGTGGGCGATATTTTTCATTGTGCCAAAAAGTTGCCATGACCGTCATTAAACCTGTTTAACACCAAATAATAAGGAAAATAAAATAAAAAATT

+s panTro2.chr1 267601 6301 + 229974691
tttttttttttttttgagatggagttttgctcttgtcgcccaggctggagtgtaatggtgagatctcggctcactgcaacctccacctccagggttcaagtgattctcctgcctcagcctcccaagtagctgggattacaggtcccagccaccacgcctagctaatttttgtatttttagtagagacagcgtttcatcatgttggtcaggctggtctcgaactcctgacctcaggtagtcgacccacctcggccttccacagtgctgagattacaggcatgagccaccacgccctgctAGGAGTTCATGCTTTAGTTCGGGAAAATATACAATAAGCAAGCCAGTTTTTAAAATGAGAACTGCAATTACAGTTAAATGCTACAAAGACAAACTCACAGGAAGATGGGATGTAGAATGATAAGGCTCTCAGAATAGTAAGAGAAACTATTGCTTCTTACGATGTTTGTCTTTCTTTGTATCGGTGCTCAGCTGAGTCTGCAGTGCTTCAGAGGCAGCTTTCATTTTATAAAAATCTATGATTTCTCCTTCCAGTTGTTTTTTCTCTTCCTCGAGCTTCCTTATCTCCTCCTGTTGAATCATTTTAAGATGCTCGAACTTGTCCTGCAGCTGTGAAACCAATGTGCAGTTGTGACACCAAAGCAGTGTGGCTGAACACCCAAAAGAATATGCTTTTTT-CTGATTATCAAACAAACCCAAATCATCACAGTAGAGCACGATCTTAATAACAATCTCAAAAACTCAGGAGTTAACACTCACATATGGAAttttttttttctttctcttttccttttataagatggagtctcactctgttgcccaggctggagtgcactggtgcgatctcagctcactgcaacctccatctcccagttcaagtgattctcctgcctcagcctcttgagtagctgggactacaggcatgcaccac

cactacaggcgtgtgccaccacacctggctaatttttgtatttttagtagagatgaggttttgccatgttggccaggctggtctcgaactcctgacctcaggtgatcctcctgctttggcctcccaaagACttttttttttttt--aatatagagacaagttctcagtatgttgcccaggctggtctcaaactcctgagctcaagtgatcctcccacctcagcttcccaaagtgctgggactGActggatgcagtggctcatgcttgtaaactcagcactttgggaggccaaggtgggagggtcgcttgagcccaggagttcaagaccagactgggtgatataacAcaatagtaaacttcaacaggagagagaatctgtaaacttgaatatagatcttctgaaattatccagtcagaggacaaagaaaaaaagaataaaaaagagaaaagaaggctgggcgtggtggctcaagcctgtaatcccaacactttgggaggctgaggcaggcagattaagaggtcaggagttcaagaccagcctggccaacatgacaaaaccccatctctactaaaaatacaaaaattagccgggtgtggtggcacacacctgtagtcccagctacttgggaggctgaggcaggagaatcgctttaacccaggaggcggaggttggagtgcaatgtgagccgagaccacacattgcactccagcctgggtgacagagcatgagtctgtctcaaaaaaaaaaaaagaaagaaagaaaaaaaagagacagagaaaagaaagccaacaagacaccattaggcaaaccattgtcaggttatgggagtttgagaaggaaagtagagaaaggagaagaaagcttatttaaggaatggctgaaaactgcctaaatcatgggaaagatttagacatctaaatccatgaagcttaaagattcctaaagaggttcaaaccaaatagatattcaccaagtcacaatataatca

aatattcaaaagttaaagaaactttgcaggtcaggacagaatcgaataatacattcaaagtgctgaaagaaaaaaactgccagcaactaatattatgtctgacaaagctgtccttcagaaagaaaaaagaaataacgtgtttcctcgacaaacaaagctgagggcattcaggactactaggtctaccttaaaaaaatgcttaacggagtttttcaagtaaaaatgaaTGATGTTgggagcggtggctcatgcctgtaatcccattttgggaggctgaggtgggtggatcacctgaggtcgggaggtcaagaccagcctggccaacatggcaaaaccccacctccagtaaaaatacaaaaaattagccaggtatgaaggccactgacatcgtgccactgcactccagcctgggtgacaagagtcaaactacatttcaaaaacaaaaaataaaacaaaccaaaaaaacaaaacttgagGCCTGGTCTTCTGCTCCTCTCCAACCCCCCCTTCTCTGGGCCCAAGCCACCTTGGCTGAGGAGGGGGCGAGGAGGTGTGAGCCCCTGCCAGGAACCCCCTGCCCGGACCAAGTACTCGGCCCCCAGGCCTGCATTCAGTGAGGCCTCCCGTGGCATCAGCATGTTCGTGTGGAGGAATGTGGAAGGTCACTCTGCGGCCGTGTTCCCCTGGTACTCCATCCCCTTCCTCACCCCTCCCTGCAGCCACACGAGGCC-AGCAACCTGCCAGTCACTCAGTGGCCTCCAACCAGAGAAAGCAACCTGCCAAGTTGGCAGCTGTTGCTCATGAGCATCCACCAGGTGGGACAGGGAGTGTTGACCCTGGGCGGCCCCCTGGAGCCACCTGCCTTGAAAGCCCAGGGCCCGCAACCCCACACACTTTGGGGGTGGTGGAACCTGGTAAAAGCTCACCTCCCACCATGGAGGAGGAGCCCTGAGCCCCTCAGGGGAGTCCCTGCTGGACAGTGAGACAG

AGAATGACCATGATGATGCTTTCCTCTCCATCATATCTCCTGACACCCAGTTGCCTCTACCACTCAGATGATGTCAGGCCCAGTCCCTCAGTGCCCTGCGCAAGGAACAGGACTCATCTTCTGAGAAGGATGGATGCAGCCCCAACAAATGGGACAAGGACCACATCCGGTGGCCCATGAGTGGCGGTCATGATCTTCAGCAAGCGGCACCAGGCCCTGGCGGGGCGCACCAGGGTCACCCCAACCAGGATAACTGGACCATCAGCCAGATGCTGAGTGAGCGGTGGTACACCCTGGGGCCCAATGAGATGCAGAAATACCACGACCTGGCCTTCCAGGTGAAGGTGGCCCACTTGCAACAAGGACCGAAAGAAGTCCAGCTCAGAGGCCAAGCCCACAAGCCAGGGGCTAGCACGAGTGTAACAAGGGCTCATGGGAGCAGAGCATATCAGAGACGGGCACTGCCACTGCCCCTAGGGTGTCCTCTGAACTCCTGTCAGTTGCAGCCCAAACACTCCAGAGCTCGGATACCAAGGAGCAGCTTCTGTGGGGCAGAACGGCTGCACACAGTCAGGGAACCTGGCTCAGCCTGGCCCAAGCCTTCTCCCACAGCGGGGTACACAGCCTGGATGGCATGGAAATAGACCATCAGGCACTACGGGAACTGACACAGGTGGTGTCTGGCACTGCATCATACTCTGGCCCAAAGCCTTCTACTCAGTATGGAGCTCCAGGCCACTTTGCAGCCCCTGGTGAGGGAGGTGATCAGTGGGCAGCCCTGCTGCTGCCCACCTGAGCTGCTCATTCCCAGCACATGGCCAGTGAGGACATAGCGAGTGACCAGGAGCACACGGTCATCCATGAGGAGGAGGGGGTGATGATGTCATTGCTGATGATGGCTTTAGCACCACTGACACCGATCTCAAGTTCAAGGAGTGGGTGACCGACTGAGAGTGGGAACAACTCTGCGGAGGAGCCAGAGGGCAACA

AGGGCTTTGGTGGGAAGGTATTTGCACCTGTCATTCCTTCCTCCTTTACTCCTGCCACCCCTTGCTGGATCCTGAGTCCCCAGGGTCCCCCGATCCACCTGCAGCTTTTGGCAAAGTCTATGGTCCCACTCTGTCCTCCTCCTACACATACTCGGATGCTTCCTCCTCAACCTTGGCACCCACCTCCTTCTTACTGGGCCCAGGAGCCTTCAAAGCCCAGGAGTCTGGTCAAGGCAGCAGAGCGGGCCCCCTACGGCCCCTACCCCTGGGGATGGGGGCCCAGGGACGCCTTCCAAGGTGACCTGTTTCCTCCCAATGGATCCTGCCACCTTCTGAAAGAAGGTGCAAGAGACCTGAAAGTGTGGGCGACCTGGAGCTACCAGGCTCCTCAGTCATCAGGGTCCCTCCCAACACTAAGGCTTTCCTAGGCAGGAGCTGAGCTGAGCCACCCGGGGGGCAGAGCCTGAAGAGAAACTGACTGGGCTTTCGGGGTCGGGGCAGAGGGAACCCCACGGGCATGGATCCCACACTGAAGGACCCCACCATGCCCAAATGCAAGATGAGAAGATGCTCCAGCTGCAGTCCAAAGCCCGACACCCCCAACTGTGCCATGTGTGATGGGGACAGCTTCCCCTTTGCCTGTACAGGTGGAGAAGCCGAGGACAGGCTCAGGGAACCGGAGACCGAGAAGGCGCTGTACTCTTCACTGCACGTGCCCTGGACCAGTGCCAGCCCTGATCAAGCAGCTCTTCCAGGCCCACTTCTTCTTCCTGTCCACTAGGCCACAGCCGCCCTCCAGGCCCACTATGCACACATCTTCCCCTCCAAGGTTTGTTGTGCCCCTGCCCTGACTCCCAGCCCTGTGGGGGTCCTGACCGCACCTCACCTGGCTCAGACTCTTGACGCTGCCCTGGCTGCCCCACCACTGCCTCTGCCCGAGAGTCACGTGAGGCTGAGAGTAGGGGCAGGGGCAGCAGTAGTGCCAGTTG

GGGGGCGGTCCAGTGGGAGGAGCCTCAGCCTCGTGGGCTGCTCCGTGGGACTGATGACTGCATGATCTTCTGGGCACCTGACGGATCTTCAACTGCAGGTGAAACGGATGCTGGTGGTGGGTGCAGGGCCGCTGGGAGCTGCTGCATGGTTCCCAGAGGCTGGACTGGGGCAGGTGCCAACTGAAGCTGCTGGGGCAGCATGGGCAGGATGTTCTGCACACAAACCTTGGAGAAGAAGATGTGTGCATAGCGGGTCCACTGCTGCTGCCCCTGCCCTGACTCCAAGCCCTGCCTGACCCCACCTCAACCTGCTCAGGCTCTGGCGCAACCCTGGCTGCCCTGCCACTGCCTCTGCCCCAGAGTTGGGGCCTTGACAGCCTGGTTGGAAGGGGACACCCCAGCCCTGCCTCAACACCTGGGGGTCTCCATAACTACCACAGGCAGGTGGGCAACCCCAAAGATCCCAGGACTCACAGTACCCCCTGAGAACATGGACAGTATGTGGGGGTAGCAATGGAGGGCAGGATGGTTATCTTCTCCCAGGTAAAGCCATTTAATCCTTTCAGTTTGGGATGGAGTAAGGCCTGCTTCtttttttttttttttttttttttttttttttttttgagaccgagtcttgctctgtcgcccaggctggagtgcagtggtgcgatcttggctcactgcaacctcttcccgccgggttcacgccattctcctgcctcagccttccgagtagctaggattacaggtgcacgctaccacgtccggctaatttttgtatttttagtacagacggggcttcatcatcttggccaggctgatttcgatctcctgacatcgtgatctgcctgcctccccctcccaaagtgctgggattacaggtgtgagccaccacgcctggccAAGGCCTGCTCCTCTTATCTATACCCCCTACCCCTGCAGCTGTGCCGGGGGGAAAGCTGGGCAGTTTCCCTCCTCCAAGCCCC

TGTACATACCATGAATTGTGGGACCTTCAGAGCTTTTCACTTTTCGGAAAATAGCTCCTGCTGGGGCTACAAGATGGAGTGTGAAGAGGGCCTTGGGCCACAGGGAGGCGCCTGTGGACTAGGGGGAGTTCATGCACCCCTTCTTTCCCCAGAGGGGCTGGACTCAGGTGAGTATGGGGGTGGGGGCTCCTGCACTTCGACACAGGCAGTGGGAGGGTTTTCTCCCCATTCCCTCTGCACTCCCAACTTGAGCTATACTTTTTAAGAAAGTGATTCACCCTGCCTTTGCCCCCTTCCCCAGAACAGAACACGTTGATCATGGGCGATATTTTTCATTGTGCCAAAAATTTGCCATGACCGTCATTAAACCTGTTTAACACCAAATAATAAGGAAAATAAAATAAAAAATT

+
+a score=55912
+s hg18.chr1            124729 624 + 247249719
CGGGCTTGGCGCAGAAACTCACTCCAAATAAATTACCTACCAAAACATTTACATAATGGTGGAAATATTCCAAAATTCAATATTTTGGGATTTATACACAAAAGATAAACAAATTAGAGGCCAAGAGGCTGCCGGAAGGGAAAAACAGGGCCTGGAATGGCCGACGTGAGGAATGAGCTGGGCCTAAAGAGGCCACTGGCAGGCAGGAGCTGGACCTGCCGAAGTGGCCGAAAGGCAGGAGCTTTGGACTGGGGAGGCCGCAGTGAGGCGAGAGCTAGCTGGGCGTGGAGAGTCCGCTGTGAGGCCGAGGCCGAGGCTGGGCCCGTGCAGGCCTTCGAGACGCAGGAGGCCGGGCCTGCAAAGGCCGACTGGAGATCAAGTTCTGCGCCTGAAGAGGCTGCCAAAAGTCAAAAGCGGGGCCTGGGAAGGCCGCCGAGAGCCATGAGCTGGGCTGGGCCGAAAGAGGCCACTGGGAGGCAGGAGGAGCTGGGCCTGGAGAGGCTGACTCGAGGAAGTTTTGCACCTGGAGAGGCCGTCGAGAGGACGGAGCTGGGCCCAGGGAGGCCGACTTGCTGCTCTTCCAGGCCCACTTCCAGGCCGACTTGAGGACGACTTGGGCCTGCA

+s panTro2.chr1_random 7175462 620 +   9420409
CGGGCATGGTGCAGAAACTCACTCCAAATAAATTACCTACCAAAA----TATATAATGGTGGAAATATTCCAAAATTCAATATTTTGGGATTTATACACAAAAGATAAACAAATTAGAGGTCAAGAGGCTGCCAGAAGGGGAAAACGGGGCCTGGAAAGGCCGTTGTGAGGAATGAGCTGGGCCTAAAGAGGCCACTGGCAGGCAGTAGCTGGACCTGCCGAAGTGGCCGAAAGGCAGGAGCTTTGGACTGGGGAGGCCGCAGTGAGGCGAGAGCTAGCTGGGCCTGGAGAGTCCACTGTGAGGCCGAGGCCGAGGCCGGGCCCGTGCAGGCCTTCGAGAGGCAGGAGGCCGGGCCTGCAAAGGCCGACTGGAGATCAAGTTCTGCGCCTGAAGAGGCTGCCAAAAGTCAAAAGAGGGGCCTGGGAAGGCCGCCAAGAGCCATGAGCTGGGCTGGGCCAAAAGAGGCCACTGGGAGGCAGGAGGAGCTGGGCCTGGAGAGGCTGACTCGAGGAAGTTTTGCACCTGGAGAGGCCGCCAAGAGGACGGAGCTGGGCCCGGGGAGGCCGACTTGCTGCTCTTCCAGGCCCACTTCCAGGCCGACTTGAGGACGACTTGGGCCTGCA

+
+a score=3198
+s hg18.chr1       125369 47 + 247249719 TGGAGCTAAGCCTGGAGAGACTGACTTCGGGACGATTTGGGCCTGCG 
+s panTro2.chr1 203149100 47 + 229974691 TGGAGCTGGGCCTCGAGAGGCCAACTTCAGGAGGATTTGGGCCTGCA 
+
+a score=10475
+s hg18.chr1            125416 119 + 247249719
GAGGCCGCCGGGAGGCCCAAGCTGGGCCTAGAGGAGCCCACCGACCGGAGGCCATTTGGGGCCTGCAGATGTCATCGGAGGGCCAGGAGCTGAGCCTGGAGAGGCCACCGCGAGGCCTG

+s panTro2.chr1_random 7176082 118 +   9420409
GAGGCCGCCGGGAGGCCCAAGCTGGGCCTAGAGGAGCCCACCTACCGGAGGCCGTTTGGGGCCTGCAGATGCCATCGGAGGG-CAGGAGCTGAGCCTGGAGAGGCCACCGTGAGGCCTG

+
+a score=7657
+s hg18.chr1       125535 79 + 247249719
AGCTGGGCCTGGGGAGCTTGGCTTAGGGAAGTTGTGGGCCTACCAGGGCCGCTGGGAGCTGGGCAGGAGCTGAGTCCAA 
+s panTro2.chr1 224035422 79 + 229974691
AGCTGGGCCTGGGGAGCTTGGCTTAGGGAAGTTGTGGGCCTACCAGGGCCGCTGGGAGCTGGGCAGGAGCTGAGTCCAA 
+
+a score=51195
+s hg18.chr1            125614 592 + 247249719
AGACGTTGTTGGGACCTGGAGTCGGGCCAGAGTCCGGCCTGGAGATGCAGCCGGGAGGAAGAGCTGGGCCCGGAGGGGGCGCCGGGAGGCTGCAAGTGGGTCTGAGAGGCCAACTTGAGGAGGCCTGGCCTCTGCCTCCCGCATTGCCCAGCTGTTCCTCCTGGCTGCATCTCCCACCTCCCAGCAAACAAGCTCTTTTGGCTCAGCTCCCGCCTGCGTTTGTAGACCCCAAAGTTTCTGCAACCAAGCTCTTCAGACCCACATCCCTTCTCCCAGTGACTGAACAGTCCCAGCTCCGGCTGGAGAAGGGTGTCTGCAGA-CCCCGCTGTTGCCTCCCAGGGGAGTCTCCAGGCCCAGCTCTCGCCCCACCGCGACCTCCCAGGCCCAAGTCCCTGCCTACCTCCCAGCAGCCCGAGTGCGATCCTGTTCCTCCCTCACGGTGGCCTGTTGAGGCAGGGGGTCACGCTGACCTCTGTCCGCGTGGGAGGGGCCGGTGTGAGGCAAGGGCTCACACTGACCTCTCTCAGCGTGGGAGGGGCCGGTGTGAGGCAAGGGGCTCACGCTGACCTCTGTCCGCGTGGGAGGGGCCGGT

+s panTro2.chr1_random 7176200 591 +   9420409
AGACGTTGTTGGGACCTGGAGTCAGCCCAGAGTCAGGCCTGGAGATGCAGCCGGGAGGAAGAGCTGGGCCCGGAGAGGACGCCGGGAGGCTGCAAGTGGGTCTGAGAGGCCAACTTGAGGAGGCCTGCCCTCCGCCTCCCGCATGGCCCAGCTGTTCCTCCTGGCTGCATCTCCCGCCTCCCAGCAAACAAGCTCTTTTGGCTCAGCTCCCGCCTGCGTTTGTAGACCCCGAAGTTTCTGCAACCAAGCTCTTCAGACCCACATCCCTTCTCCCAGTGACTGAACAGTCCCAGCTCCGGCGGGAGAAGGGCGTCTGCAGACCCCCACTGTTGCCTCCCAGGGGAGTCTCCAGGCCCAGCTCTCGCCCCATCGCGACCTCCCGGGCCCAAGTCCCTGCCTACCTCCCAGCAGCCCGCGTGCGACCCTGCCCCTCCCTCACGGTGGCCTGTTGAGGCAGGGGCTCAGGCTGACCTCTGTCAGCATGGGAGGGGCCGGTGTGAGGCAAGGGCTCCCGCGGAC--CTGTCAGCGTGGGAGGGGCCGGTGTGAGGCAAGGGGCTCACGCTGTCCTCTCTCAGCGTGGGAGGGGCCGGT

+
+a score=16633
+s hg18.chr1       126206 202 + 247249719
GTGAGGCAAGGGCTCACACTGACCTCTCTCAGCGTGGGAGGGGCCGGTGTGAGGCAAGGGGCTCACGCTGACCTCTGTCCGCGTGGGAGGGGCTGGTGTGAGGCAAGGGCTCAGGCTGACCTCTCTCAGCGTGGGAGGGGCCGGTGTGAGGCAAGGGGCTCACGCTGACCTCTGTCCGCGTGGGAGGGGCCGGTGTGAGACA

+s panTro2.chr1 203152230 202 + 229974691
GTGAGGCAAGAGCTCACACTGAACTCTCTCTCCGTGGGAGGGGCCGGTGTGAGGCAAGAGGCTCACGCTGTCCTCTCTCGGCGTGGGAGGGGCCGGTGTGAAGCAAGGGCTCACACTGACCTCTCTCGGCGTGGGAGGGGCCGGTGTGAGGCAAGGGGCTCACGCTGACCTCTGTCAGTGTGGTAGGGGCCGGTGTGAGGCA

+
+a score=11076
+s hg18.chr1       126408 188 + 247249719
AGGGGCTCACACTGACCTCTCTCAGCGTGGGAGGGGCCGGTGTGAGGCAAGGGGCTCAGG-------------------------------------------------------------------------------------------------CTGACCTCTGTCCGCGTGGGAGGGGCCGGTGTGAGGCAAGGGGCTCAGGCTGACCTCTGT-----------------------------------------------CCGCGTGGGAGGGGCCGGTGTGAGGCAAGGGGCTCAGGCTGACCTCTGTCCGCGTGGGAGGGGCCGGG

+s panTro2.chr1 203155717 332 + 229974691
AGGGGCTCACGCTGACCTCTCTCAGCGTGGGAGGGGCCGGTGTGAGGCAAGGGGCTCAGGCTGACCTCCCTCAGTGTGGGAGGGGCCGGTGTGAGTCAGGGCCTCAGGCTGACCTCTCTCAGTGTGGGAGGGGCCGGTGTGAGTCTATGGGCTCAGCCTGACCTCTGTCAGCCTGGGAGGGGCCGGTGTGAGGCTAGGGGCTCAGGCTAACCTCTGTCAGCCTGTGAGGGGCCTGTGTGAGGCAAGGGGCTCAGGCTGTCCTCTCAGCATGGGAGGGTCCGGTGTGAGGCAAGGGGCTCAGGCTGACCTCTCTCAGCGTGGGAGGGGCCGGT

+
+a score=5436
+s hg18.chr1            126596 60 + 247249719
GTGAGGCAAGGGCTCACACTGACCTCTCTCAGCGTGGGAGGGGCCGGTGTGAGGCAAGGG 
+s panTro2.chr1_random 7176791 60 +   9420409
GTGAGGCAAGGGCTCACACTGACCTCTCTCAGCGTGGGAGGAGCCAGTGTGAGGCAGGGG 
+
+a score=18226
+s hg18.chr1       126656 239 + 247249719
GCTCGGGCTGACCTCTCTCAGCGTGGGAGGGGCCGGTGTGAGGCAAGGGGCTCGGGCTGACCTCTCTCAGCGTGGGAGGGGCCGGTGTGAGGCAAGGGGCTCGGGCTGACCTCTGTCCGCGTGGGAGGGGCCGGTGTGAGGCAAGGGGCTCGGGCTGACCTCTCTCAGCGTGGGAGGGGCCGGTGTGAGGCAAGGGGCTCACGCTGACCTCTGTCCGCGTGGGAGGGGCCGGTGTGAGG

+s panTro2.chr1 203156110 239 + 229974691
GCTCAGGCTGACCTATGTCAGCATGGGAGGGGCCTGTGTGAGGCAAGGGGCTCAGGCTGAACTCTGTCAGCGTGGAAGGGGCCGATGTGAGGCAAGGGGCTCAGGCTGACCTCTGTCAGCGAGCGAGGGGCCTGTGTGAGTCTATGGGCTCCCGCTGACCTCTGTCAGCCTGGGAGGGGCCGGTGTGAGGCTAGGGGCTCAGGCTGACCTTTGTCAGCGTGGGAGGGGCCGGTGTGAGG

+
+a score=12466
+s hg18.chr1       126895 150 + 247249719
CAAGGGCTCACACTGACCTCTCTCAGCGTGGGAGGGGCCGGTGTGAGACAAGGGGCTCACGCTGACCTCTGTCCACGTGGGAGGGGCCGGTGTGAGGCAAGGGGCTCACACTGACCTCTCTCAGCGTGGGAGGGGCCGGTGTGAGGCAAG

+s panTro2.chr1 203157314 149 + 229974691
CAAGGGCTCACACTGATCTCTCTCAGCGTGGGAGGGGCCGGTGTGAGGCAAGGGGCTCACGCTGATCTCTCTCGGAGTGGGAGGGGCCGGTGTGAGGCAAGGG-CTCACGCTGACCTCTCTCAGCGTGGGAGGGGCTAGTGTGAGGCAAG

+
+a score=2383
+s hg18.chr1       127045 28 + 247249719 GGGCTCACGCTGACCTCTGTCCGCGTGG 
+s panTro2.chr1 229694308 28 - 229974691 GGGCTTACGCTGACCTCTGTCAGCGTGG 
+
+a score=78315
+s hg18.chr1    127073 855 + 247249719
GAGGGGCCGGTGTGAGGCAAGGGCTCACACTGACCTCTCTCAGCGTGGGAGGAGCCAGTGTGAGGCAGGGGCTCACGCCTCTGGGCAGGGTGCCAGAGGCATGAGTTGGGCATCAACAGGCCACCGTGAGGGAGGAGCTGGGCCGCACGCGGGCTGCTGGGAGGCAGGCAGGGACTTGGCCCCGGGAGGCCGCCGTGGGGGCAAGAGCTGGGCCTGGAGAGGCCCCTGGGAGGCAAGGGCGGGGCCTGCAGAGGCTGTTCTCCAACCAGTGCTAGAACTGTACAGGCCACCAGGAGGCAGGAGGTGGGCCCTCAGAGCTTGGCTGGAGAAAGTTCGGGGCCTACAAAGGCGGTTGGGAGCTGGGCAGGAGTTGAGCCAAAAGAGCTTGCTTACTTGCTGGGAGGCAGGGCCGGGAGAGCCCGACTTCAGGACAACTTGGGCCTGCGGCGGTCGCCGGGAGGCCCAACCTTGGCGTGGAGGAGCCCACCGACCGGAGACCATTTGGGGCCTGGAGATGCCATCGGAGGGCAGGAGCTCATCCTGGAGAGGCCACCGTGAGGCCTGACCTGGGCCTGGGGAGCTTGGCTTGAGGAAGCTGTGGACCGACCAAGGCCGCCAGGAGATGGGTAGGCACTGAGTCCAAAGAGGTTGTTGAGAGGCAGGAATCGGGCCTGGAGACCCAACCAGGAAGAAGAGCTGGGCCCGGAGAGAACGCCCGGAGGGTGCAAGTGGGTCTGGAGAGGCCGACTTGAGGAGGTTCTGGGCCCGGAGAGGCCGCTGGAAGGGAAAAACTGGGCCTGGAAAGGCCGTTGTCAGGAATGAGCCCCATGGGCCTGAAGAGGCCACTGGCAGGCG

+s panTro2.chr1 274511 855 + 229974691
GAGGGGCCGGTGTGAGCTAAGAGCTCACACTGACCTCTCTCAGCGTGGGAGGATCCAGTGTGAGGCAGGGGCTCACGCCTCTGGGCAGGGTGCCTGAGGCATGAGTTGGGCATCAACAGGCCACCGTGAGGGAGGAGCTGGGCCACACGCGGGCTGCTGGGAGGCAGGCAGAGACTTGGCCCCGGGAGGCCGCCGTGGGGGCAAGAGCTGGGCCTGGAGAGGCCCCTGGGAGGCAAGGGTGGGGCCTGCAGAGGCTGTTCTCCAACCAGTGCTAGGCCTGTACAGGCCACCAGGAAGCAGGAAGTGGGCCCTCAGAGCTTGGCTGGAGAAAGTTCGGGGCCTACAAAGGCGGTTGGGAGGTGGGCAGGAGTTGAGCCAAAAGAGCTTGCTTACTTGCTGGGAGGCAGGGCCGGGAGAGGCCGACTTCAGGACAACTTGGGCCTGCGGCGGTCGCCGGGAGGCCCAAGCTTGGCGTGGAGGAGCCCACCGACCAGAGACCATTTGGGGCCTGGAGATGCCATCGGAGGACAGGAGCTCATCCTGGAGAGGCCACTGTGAGGCCTGACCTGGGCCTGGGGAGCTTGGCTTGAGGAAGCTGTGGGCCGACCAAGGCCGCCAGGAGATGGGTAGGCACTGAGTCCAAAGAGGTTGTTGAGAGGCAGGAGTCGGGCCTGGAGACGCAACCAGGAAGAAGAGCTGGGCCCAGAGAGGACGCCCGGAGGGGGCAAGTGGGTCTGGAGAGGCCGACTTGAGGAGGTTCTGGGCCCGGAGAGGACGCCGGAAGGGAAAAACTGGGCCTGGAAAGGCCGTTGTGAGGAATGAGCCCCATGGGCCTGAAGAGGCCACTGGCAGGTG

+
+a score=65540
+s hg18.chr1       127928 702 + 247249719
GGAGCTGGGCCTGCCGAAGCGGCCGAGAGGCAGGAGCTTTGGACTCGGGAGGCCGCAGTGAAGCAACAGCTAGCTGGGCGTGGAGAGTCCGCTGTGAGGCAGAGGCTGGGCCTGTGCAGGCCTTCGGGAGGCAGGAGGCTGGGCCTTGTCGAGGCCTGCAGAGGCCACCGAAAGTCAAAAGCGGGGCTTGGGAAGGCCGCCGGGAGGCATGAGCTGGGCTGGGCCGAAAGAGGCCACTGGGAGGCAGGAGGAGCTGGGCCTGGAGAGGCTGCCGAAAGGCAGGAGCTTCACCTGAGGATGCCACAGTGAGACACCATCTGGGTCTGGAGGGTCCACTGTGAGGCAGAGGCTGACCTGTAGAGTCCGACAGTAGACAGAAGTTGGGCAAAAGCCTGATTTGAGGAAGTTTTGGGCTTCAAGAGTCAGCCACGAGGCAGGCACTAGGCCTGGAAATGGCCTCACAGTCATAAGTTGGGCCTAAATGGGCCACTGTGAGGGAGGAGCTGTGCCTGTTGAGGCTGCTGGCAGGCAGGCAGAAATTTGGCCTGGGGCAGCTGCCATGAGGCAAGAGCTGGGCCTGGAAAAAGCCCCTGGGAGGCAAGAGCAGGGCCTGCAGAGGCTGTTCTCAAGTCAAAGCTGGGCCTGTTGATGCCACCGGGAAGCAGAAGGTGGGCCTGGAGAGTTTGACTTGAGGAAGTTTTG

+s panTro2.chr1 224036698 702 + 229974691
GGAGCTGGGCCTGCCGAAGCGGCCGAGAGGCAGGAGCTTTGGACTTGGGAGGCCGCAGTGAGGCGACAGCTAGCTGGGCGTGGAGAGTCCGCTGTGAGGCAGAGGCTGGGCCTGTGCAGGCCTTCGGGAGGCAGGAGGCTGGGCCTTGTCGAGGCCTGCAGAGGCCACCGAAAGTCAAAAGCGGGGCTTGGGAAGGCCGCCGGGAGGCATGAGCTGGGCTGGGCCGAAAGAGGCCACTGGGAGGCAGGAGGAGCTGGGCCTGGAGAGGCTGCCGAAAGGCAGGAGCTTCGCCTGAGGATGCCACAGTGAGACACCATCTGGGTCTGGAGGCTCCACTGTGAGGCAGAGGCTGGCCTGTAGAGTCCGACAGTAGACAAAAGTTGGGCAAAAGGCTGATTTGAGGAAGTTTTGGGCTTCAAGAGTCAGCCACAAGGCAGGCACTAGGCCTGGAAATGGCCTCACAGTCATGAGTTGGGCCTAAATGGGCCAGTGTGAGGGAGGAGCTGTGCCTGTTGAGGCTGCTGGCAGGCAGGCAGAAATTTGGCCTGGGGCAGCTGCCATGAGGCAAGAGCTGGGCCTGGAAAAAGCCCCTGGGAGGCAAGAGCAGGGCCTGCAGAGGCTGTTCTCAAGTCAAAGCTGGGCCTGTTGATGCCACCGGGAAGCAGAAGGTGGGCCTGGAGAGTTTGAATCCAGGAAGTTTTG

+
+a score=42031
+s hg18.chr1            128630 478 + 247249719
GGCCTACATTGGCCGCCATTAGCTGGACAGGAACTGGGCCAAAAAAGGCTGTTGTGAGGCAGCAGTTGTGCCTGTAGACCCAGCCAAGAGGAAGAGGTGGGCCTGGAGAAGCCCCCATGAGGCAGAGGTTGGGCCTGTAGACGCTGACAGGAGGCAGGAGCTGGGCCTGGACAGGTCAACTTGAGGAGATTTTGGGCCTTCATAGGCCACCAGGAGGCAGCAGTTGGGACTAGAGAGTCTGACTTGAGTAAGTTTTGGGCCCGGAGATGATGTCCTGGGACAGGAGTTGGCCGTGGAGAGGCCACCGTGAGGCATAAGCTGGATGTAGAGAGGCCAGTGTGAGGCAAGACCTGGGCCTGTCTAGGCTGCTGGGAGACAGGCAGGAATCTGGCCAGGGAAGGTTGCCATGAGACAAAAGTTGGGCCTGGAAAGGCCCTTGTGAAGCATGAGCTTGGCCTAAAGAGGCCACTGGGTGGCA

+s panTro2.chr1_random 7178181 477 +   9420409
GGCNTACATTGGC-GCCATGAGCTGGACAGGANCTGGGCCAAAAAAGGCTGTTGTGAGGCAGCAGTTGTGCCTGTAGACCCAGCCAGAGANNAGAGTNGGGCCTGGAGAAGCCCCCATGAGGCAGAGGTTGAGCCTGTAGACGCTAAAAGGAGGCAGGAGGTGGGCCTGGAGAGGTCAACTTGAGGAGATTTTGGGCCTTCATAGGCCACCAGGAGGCAGCAGTTGGGACTAGAGAGTCTGACGTGAGTAAGTTTTGGGCCCGGAGATGACGTCCTGGGACAGGAGTTGGGCCTGGAGAGGCCACCGTGAGGCATAAGCTGGATGTGGAGAGGCCAGTGTGAGGCAAGACCTGGGCCTGTCTAGGCTGCTGGGAGACAGGCAGGAATCTGGCCAGGGAAGGTTGCCATGAGAGAAAAGTTGGGCCTGGAAAGGCCCTTGTGAAGCATGAGCTTGGCCTAAAGAGGCCACTGGGTGGCA

+
+a score=105363
+s hg18.chr1    129108 1151 + 247249719
GGAGCTGGGTGTGTAGAAGCTGCTGAAAGGTTGGGAGCTTGGCTTGGGGGGTCCACAGTGAGGTAGAAGCTGGGCGTGAAGAATCTGCTGTGAGGCAGACGTTGGGACTGTAGAGGCTGACGGGAGGCAGAGGCTGGGCCTGGAGGGGCCACCAAGATGCAGGAGCTGGGCCTGGAGAGGCTGCAAAGAAGCATGAGCTGGGCCTGGTGAGGTCAACTTGAGAAAGTTCAGGGCCTGGAGAGAAGGCTGGGAGGCAGGAGCTGGGTCTAAAGAGGCCATTGTAACGATGGAGCTGTGCCTGTGGAGGCTGTTGTGAGGCAGTAGCCTCATCTGCGGAGGCTGCCGTGACGTAGGGTATGGGCCTAAATAGGCCATTGAGAGTCATGAGCTTGGTCTGTAGAGGCTGACTGGAGAAAGTTCTGGGCCTGGAGAGGCTGCCGGGAGGTAGGAGCTGGGCCAAAAgatgtaagcacatttgcatttattaggcactttatttccattattacactgtaatatataataaaataattatggaactcaccataatgtagaatcagtgggcgtgttaagcttgttttcctgcaactggatgttcccacctgagcgtgatgggagaaagtaacagatcaataggtattagattctcataaggacagcgcaacctcgatccctcacatgcacggttcacaacagggtgcgttctcctatgagaatctaatgctgctgctcatctgagaaggtggagctcaggcgggaatgtgagcaaaggggagtggctgtaaatacagacgaagcttccctcactccctcactcgacaccgctcacctcctgctgtgtggctccttgcggctccatggctcaggggttggggacccctgCTCAAGTGCATCCAAAACGACCCTTCCCACACCAGTCTTCACAGTGGTCAAGGGCAGCAACCACTTAG

CTCCCAAGGCATGTGCCTCAGCTGGCATTTCGTCACAATCAACAGTAAGTGGTAGCTTGAGTCACTGTGAGGTCACCTACTGGAAATCACCAGCATCCCATTTCCCACTGGCAAAGAGCTCAGCACTGCCCCCTGGGAAACCAAACCTATGCCCAAATCCCATCTGTGTGGGTTTACCTCCTGGGACCCTTCCTAACATAT

+s panTro2.chr1 275366 1150 + 229974691
GGAGCTGCGTGTGTAGAAGCTGCTGAAAGGTTGGGAGCTTGGCTTGGGGGGTCCACAGTGAGGCAGATGCTGGGCGTGAAGAATCTGCTGTGAGGCAGATGTTGGGACTGTAGAGGCCGACGGGAGGCAGAGGCTGGGCCTGGAGGGGCCACCAAGATGCAGGAGCTGGGCCTGGAGAGGCTGCAAAGGAGCATGAACTGGGCCTGGTGAGGTCGACTTGAGAAAGTTCAGGGCCTGGAGAGAAGGCTGGGAGGCAGGAGCTGGGTCTAAGGAGGCCATTGTAACGATGGAGCTGTGCCTGTGGAGGCTGTTGTGAGGCAGTAGCCTCATCTGCAGAGACTGCAGTGACGTAGGGTATGGGCCTAAATAGGCCATTGTGAGTCATGAGTTTGGTCTGTAGAGGCTGACTGGAGAAAGTTCTGGGCCTGGAGAGGCTGCCGGGAGGTAGGAGCTGGGCCAAAAgatgtaagcacatttgcatttattaggcactttatttccattattacactgtaatatataataaaataattatagaactcaccataatgtagaatcagtgggcgtgttaagcttgttttcctgcaactggttgttcccacctgagcgtgatgggagaaagtgacagatcaataggtattagattctcataaggacagcgcaacctagatccctcacatgcacggttcacaacagggtgcgttctcctataagaatctaatgctgctgctcatctgagaaggtggagctcaggcaggaatgtgagcaaaggggaatggctgtaaatacagacgaagcttccctcactccctcactcgacaccgctcacctcctgctgtgtggctccttgcggctccatggctcaggggttggggacccc-GCTCAAGTGCATCCAAAATGACCCTTCCCACACCAGTCTCCACAGTGGTCAAGGGCAGCAACCACTTAG

CTCCCTAGGCATGTGCCTCAGCTGGCATTTCGTCACAATCAACAGTAAGTGGTAGCTTGAGTCACTGTGAGGTCACCTACTGGAAATCACCAGCATCCCATTTCCCACTGGCAAAGAGCTCAGCGCTGCACCCTGGGAAACCAAACCTATGGCCAAATCCCATCTGTGTGGGTTTATCTCCTGGGACCCTTCCTAACATAT

+
+a score=1144609
+s hg18.chr1            130272 12488 + 247249719
tacttgagaggctgaggtgagacaatcgatttagcccaggagtttgagatcagcctggacgacataactaaatctcatctctaCAaggacgaggtgggaggatcacttgagcccaggaatttgtggccagcctgggcaacaaaagaagaccccatctggccaacatggccaacctggccaccacggtgaaactctgactctacaaaaatgatctgggcatgggtgacatgcgtgtgtagtcctagctacttgggaggttgagatgggaggattgcttgatctcagaaggccaaagctatagtgagctatgatcacatcactgcactccagcctggatggcacaggaagattctgtctcaaaaaaaagaaaagaaatatatatttaatctctgtccctggttcctggcacagagcttctaaagctcttacaaagacctcagtgatagatgtgacaggagcatcttttgttttaatatttggtcttggtcccaggtttctaacacaagagcctctaagaactttgggatctccagcatggtaagaatgcatttggggatgttgttgagatgactgggtgactgcaagctcctaaatttcttcaagaggagggctgattaccatgcaaccacatggtaagaggcttggaactttcagcctcatgcactgaactccagggggaagaggggctggagactgacttaatcaccaacagccaaaggttttatcaatcatgcttgcataataaagcctccataaacaccctgaaaggggtttgcagagctttcagggttgctggacacaggagatgctgggagggtcgcatgttcaacagagggcatgggagctctgtgcccctccgaacttaacttgccctgggtatctttctttttttt-gagacaggatcaggctcttttgtccaagctggagtgcagtggcacaa

tctcagcttactgtaacctaagcctccccagtccccagctcaaggtatcctctcatctcagcttccctagtagttggaactctaggtgcacaacaccacaccagttattattattattttttaattttttatagagacaggttttcaccatgttgcccaggctggtctcaaactcctgagtttaagcgatcctcccaccttggcctcccaaagtgctgagattacaggcatgagccactgcatccagcatgcacgtctctttcattgactgtttctgagatgtatccttcacaatgaaccagtaataggaaatgaactggccagatgtggtggctcacatctgtaatcccagcactttcagaggctgaggtgggaggatcacttgagaccaggaatttgtggccagcctggccaacacaacaagaccccatctatacaaaaaataaaagaaactagccagatgtggtggtgcaggcatgtagtctcagctactagggaggctgaggtgggagaaccactggaacccagacaatcaaggctgcaatgagctatgactgcaccattgcacaccagcctgggcaacaaaataagaccctctctctcagaaaaaaagaaaataaactgtttttctgagttccgtaaactgttctagcaaattattaaacccaagaagacagttacgggaacccccgattggtaacaggttggtcaaaagtatggtgacaacttaggacttgccattgtcatctgaagtgaggatggcctcgtgggactgagcccctaacttgtggggtctgtgctaactccaggtagtgtcagaataaagtcatgggatacccagttaatatccagagcactgaagaatctggtgtagaaactccatacgtacattcagtcggaagtgtgtgagtagagacaaacaTGGGCTTTTCTGTCACCTACCTGCTTAACTGCATAGgagaggcaatatgtggtgctcatgaacaaag

caaacattaaagtcagaccagacccaacatttgactcagtcttaatatccaggtgagcctgcgcaaatcattcattattcctaaggttttcatcactccattcataaaatggggataactgtggcacctacatgtgattctgtgagaattaacgaaatattatgcttgGGGTTATTGTGATCATTATACCTGTTCCAAACTATTTGACAAGGACAGTGATGGATGAAGACATCAAAAAATCAGAAACTGCAATGAGGTCTCTCAGGCAAAATTCCATACAAGCAAATTACTGTGTCTACAAAGCATTCCTGCCACACTTAATTCACCATTCCCTGAACAGAATATGCCATCTTCGTTGTTCAGGTCTGTACAGTGCTGGTTTCCCTTCCCGGACAGTTTGCGCTATCCCATCCCGGCCCATTCCCCATCCCTCCACCTCCCCCTTCCCTCCCCACTCTCATACAACTCTTCCTCATCTTTCAGGACTTGGCTTCAATGTCACCTTAACTGGAAGCTTCTCTCACTCTCCAGAAGAGCTTCCCATTGCACCTGATGCATGGGAAACATAATTTGATCATTTTTAAGTTACAGTCCAAATCTTTTTGTACCTGAATAACATGTTGCCCAGTCAGTCTCTCTTCCTGGATTCACAAGTCTTTCATGGTAGATCCAGCTGGAAGTGACAAAAAGACATCTTTTGACATAAAGGGATGACACAGACAGACATAAGTTCTTAAATGTCTTAAATGTTATGTGAGAATTAAACAGAATTCAAAGACTTGTGGGGAGCACTTAGGAAGTTACTGGGAATGTCATGAAGGGTTAAtttgtattttattttattttttgagacagtctcattctgtcacctaggctggagtgcagtggtgcaatcaggctcactgcagccttgaccacctgggctcaagtaatcTCACTTAATTTTTATTTGGTTTAAGAAAGTCTTGGTTGAGGgtggtggcttatgc

ctgtaatctcagcactttgggaggctgagagaggtatattacttgaggccaggagtttgagatcagactgggcaatatattaagaccctgcctctaccaaaaaACAGAGTGAATGTgtggaagacaatttttccacagactgggaatgagggaataatttcaggatgattcaagtgcattacatatattgtgcactttatttctattattactacatagtaatatataatgaaatgattctacaactcactataacgtagactcagtgggatctctgagcttgttttcctgcaactagactgtccatctggggtgatgggagacagtaacagaatatcaggcattagattctcataaggagtacacaacctagatccctcgcatgcacacttcacaacagagtttgtgctcctgtgagaatctaatgctgctgctgatctgacaggacatggagctcaggtggtcatgcaagcgatgggaggggctagaaatacagatgaagtttcccttcactcgcctgctgctcacctccagctctgtggccctgtGGTTGGAGACCGCTGCTCAAGTGCATTTGAAAGGAACCAACCCACGCCATTCTTCAGAGTCATCTTTACTGCTGCAGTGGTCAACTTGTAGCACCCCTAAGCTCGCAGGACATATGCTTCAACTGGCATTTCACAATCAACAGTATGTGGCAGCTTGAGTCATTGTGAGCTCACATCCTGGAAATCACCAGCATCCCATATCCCATT-GCAAGGAGCTCAGCACTGCTCCTTGGATAACCAAACCTATTCCCAAATCCCATCTGTGTGCGTCTATCTCCTGGTACCCTTCCTAGCATCAATTCTGTATTTGTAGGAGTCCAATCAGGAGACACAAACCACTCAAAAGTTTAAACTAGAATGAGCAAgatggctcacacctgtaatcccagaactctgggaggccaaggtgggtggactgctttgagctcaggagtttgaga

acagtctgggaaacatggcgaaacctcgtctctacaaaaaacacaaaaatcagctgggtgtggtggcacttacctgtaatcccagctactcgggaggctgaggcaggagaattgcttgagcctggcaggtggaggctgcagtgagcagaggttgtgccactgtactccagcctgggtgacagtgtgagacccggtatcaaaaagaaaaaaCGtatatatatatatatatatatatatatatatatatatatatatatatatgtaAATTTAATATAAAAAGTATTAATTTTggccaggcaaaatggctcatgcctgtaatcccagcactttgggaggccaaggcagacagatcacctgaggtcaggagttcgagaccagcctgaccagcacagagaaaccccatctctactaaaaatacaaaattagctgggcatggtggcacatgcctgtaatcccaactactcgggaggctgaggcaggagaattgcttgaacccagaaggtggaggttgcgctgagccgagatagcgccattgcactccagcctgggcaacaagagtgaaactccatctc---aaaaaaaaaaaaGGGTATTAATTTTTACAGAGGATCAGCACAATGAGGGACACACTAGCACAAAGTAAAGACAACTCTAGAGAATACGGAACTAGCAGAggccaggcattgtggctcatgcctgtaatcccagcaatttgggaagcctaggcaggaggatcgcttgaggccaggagttggagaccaatcagtgctaaatagtgagactctgtgtctaccaaaaaaaagagacattagccaggtgtggtggtggtgcacacccgtagttccagctacttgggagtctggggtgggagaaatcccttgagcctgggaagtctacactacagtgagccaagattgtgccactgcactccagcctgggcgacagagtgagaccctgtcttagaaagaaaaaagaaaagaaaGTGTTAA

TCCCCCTATGGGAATCTCCTCTTCTCCTGCCCTCTCTGGAACCTCACTTGTCAGTTCTTCCTCCCACTTTCCTGTATCTTTAACCTATCCCCCACTTTTAGCTCCTTCCCATCATCATTTAAATTACTCAAACTTCTTCTGTTTTAAAAACCTCTCCCTAAACTCAGGGAGAGGTCTTCTGCACACACATTGAGCCATCTGCTCTTCCCGGTGCCTTCTCTACAGCAGCCTGAGCCATGTCTCTAATCTATGAATCTCATCATGTTACTCCCCCATTTACATCACTTCTCCTTGCCTCAGGGATTAAGTCCAAACTCCTTAACAGCCCCTGCTCTGCCCTGCCTTGCAAGGCAGcctcactgcttgcccctctccatttcatctgctatggagtccaactgagcctcatctgccccttgaacgcacactctttctcctctgggagtctctgaagtgggtaatatcctctgcttataatatgcttccccttaaacctctactctcttcctagctagctttgactcctctgtcacttgtccgctttggcatcacctcctcatagaagacttctatgactcccgagATTCTCAGGAGCATGGCAGGTGAAGTGctcctcccatgaatggatggagattagggagtgtgtgttattcatgcttaattcaccagtgcttagctgagtacctggcataaaatagttactGTGGTGGCCAAAGTAATAACCCCCACCGCCACCAATTGCTCATGTCCtatgttacacagcacagttacagaggaagggggaattaagagtgcagataaaattaatgttgctcatcagctgaccttaaaacaagattatcctggagtatctaggagagcccatgtaattacaagcattctttaaaactggaagagggaggcagaaggttaagaaccagagacggTgggcacaatggctcatgcctgtaataccaatactttgggaggccagggtaggaaaatccctt

gagtgcaggagttcaaggtcagccatggcaacatactgaggtcccatctctacaacaaaataaaaacaaaattcactgagtgtcacgatgcttacctgtagtcccagctactgggaaggctgacatggtaggattgcttgagcctgggagtttgaggctataatgagccatgataggaccactgaactccatcctgagtgacagggcaaggtcctgtttctgaagaaaaaaaGGACATTGGAATCAGGGCCCTCTCCATCCTGAGGTGCCTACAAGGCATCTCTCTCTGCAAACGAGTAAACATCACCCTCCAACTCCTTACAGAGTGGAGCAACAGGAAAACTCCTTCACCTCATTTCTGTGCTGCTTGGGAGGCCTGGACAGCCCAATAACCAGCTCCTCGCTGATGAAGCAATCAGGAAATGGCTCGAGTTGAGCTAAGGAGAATTTGGATCCTTCCTTTGGTTCTCAGTAGGCAGGGTAGGggccaggcatggtggctcatacctgtaatccttgcactgtggggggccaaggtgagaggattgcttgaggccaggagctcaagaccagcctggacaacatagcaagacctgggtggcacacacctgtggtccctactacttggtaggatgaggtgggaggattgatcacttgatcccaggagtttcaggctgcagtgagccatgatcacaccactgcacttcagcctgggtgacagagccagaccatgtcacaaaaagttag------aaaaaaaaaaGAGAGAGGGAGAgagactatacacaggcaccaccacatttggctaatttttaaatattctgtagagacaaggtcttgctaggttgcccaggctagtctaaaactcctggcatcaggctgggcatggtggctcatgcttgtaatcgcagcactttgggaagctaaggcaggcaaatcacctgaagtctggagttcgagaccagcctggccaacacggtgaaactctg

actctatcaaaaatacaaaaatcagctgggcagtagtggcgtgtgcctgtagtctcacctactcgggaggctgaggcaggagaatcacttgaacctgggaggtggaggttgcagtggaccccatcactgcactccaccctgggtgacagagcgaga--ctGTc---aacaacaacaacaacaacaaaaacaaaaacaacaacaacaaaaaaaactcctggcatcaagacatcttcctgtcttagcctcccaaagccctgggattataCTGTTTCCTATAATTGAAGACACTTGTTCTTATACTGCTTTAAGGTATAAAGGAAGAAAaaaaaaacagataatggcaaatgttggtgaaggccgggcatggtggcagcctgtaattccagaacttagggaggctgaggtgggcagatcacttgaggccaggagtatgagaccagcctgggcaacatggtaaaatcccaccactacagaaaaatctaaaaattagccaggcatggtggcgtacacctgtaattttcagctacccaggaggctgagatgagagaatcacttgtgcctgggaggtcacggctgcagtgaactgtgatggcatcattgcactgcggcctgagagacagagcaagcccctatctag-aaaaaaaaaatgtcagtgaagatgtggaggaattggaacccacaaacattactggtgggaacataaaattgtgtaaccattttgTTTGGGTATTTCTTTTCTTGTCATTTTAATTGGATTTTTAAAAAATCAagacggggtttcactatcttgcccaggctggtcttgaattcacgggctcaagccatcctcctagctgagcctcctgagtagctgggattacaggtgtgagccattgcacccaactggtatagccacgttagaaaacattctggcagtttctcaaaaggctaaatgtacagtcatcctataatgcaacaatttcactcctaggcatatatcccagaaa

aataaaaatatatgtccacacaaaaacttgtacaacaatcttcatagcagcattattcataatgaccaatacatggaatacatggaaacaacccaaatatccaccaactgatgaacagataaacaaaatgcagtgtgtctctaccatggaatactgccatagaaggaatgaaatattgatacacactatgacataaaggaactttgaaaacactgtgctaagagggaaaaaaagccacaaaagatcacatattgtacaattctatttgtccagattaggcaaatctatagtgacaaaaaaattaatcaatggttgcctaaggctgggggcaaaggtaggtggggagagtaggaggtagtggctaaggggtatggatttctctatagggtaatgaaaggttctaaaagtgactgtggtgatcgatgcacagctctgtgaatattctaaaacctactgaattgcagatttcaataaataaagtgaatggtatgtgaatattttaataaagctattaTTTAAAATAATAATAATAGGGggctgggcacaggtggtcatgcctgcctgtaatcccagcactttgggaggctgaggcaggaggatcacttgaggtcaggagttttgagcccagtcggagcaacatggcaagatcccgtctctatgataaaaaattagctggacatggtggcacatgtctgtagtcccagctacttgggagactgaagtgagagaaccacttgagcccaggagtttgaggctacagtgaaccatgatcatgtcactgtactgtagcctaagcaacagagcaagacgctgtctctgaaaaggaaagaaaacaaaTGCAAGTTTTTATCACTTTGTGAGTGTAGCCAAGTTGGAGGAGAAATAGACAATAATAAAAGAGCACTGAATAATGACAGTGAGTGGCTGGTTAGGCTCAGTTGCTAGCTAAATGGCTTCTAAAAAATTCAATAAAGTTACAGCTCTGGGGA

CAGTCATGTAGTCAAAGAATGAAGGCGAAATTCATTACAATTGCCCATGGTCTTTATTTACATGCCTTCTAGTGAAAAATTCCTAAGTGCCTAAACAGCAAGTCTGCAATGATAGCAGCTGTTTATTAAAGACTACAAAAAAGAAATGGAggccgggcgtggttgttcacatctgtactccttgaattttgggaggctgaggcaggcagattgcctgaggtcaggagctccagaggagcctggccaacatggtgaaatcccatctctactaaaaatacaaaaattagctgggtatggtggcgggcacctgtaatcccagctactcgggaggctgaggcaggagaattgcttgaacccagaaggtgaaggttgcagtgagccaaaatcgcaccattgcactccagcctgggtgacaagagaaagactcttatctt---aaaaaaaaaaagaaaaaaaagaaaTGGCATCTTCTTCAAGAATTACATCGTGTTTCATGATAAAGAAGCTCTAATTTTGCATTTGTTCAAGTATTGATGAGATTTACCCAATATGACACCCATCTTGGATAAAATGCAAACAACACAATTTCATTTTGTCATTAACAAAACCGATTAAGTAGTCTaatataaattgcgatcttattaaaaactgatccgatttaaaaaattatggaattatggagccaataagatgttacaacctgttccaaggggaattccaaaatccacacatatctgagaccatcaagtatgatgaaatatatttgATTACTATATTGAAAAATAAACTGATTACATAGCCAACAATTGGACAGGGGTCTCCTCATCCACAGCCACACAAACCCGATCATGCAGCTGTATGGTTACAAGGCCTACATAGCCTAGAAGGGACTGGTCTGACTTGAGATTTCAtttgtatttgtattttgagacagggtcccactctgtcacccaggatggagtgcagtggtataatcatagctcactgca

accttgaccaactgggctcaagagatgctcctgcctcagctgcccccatacctgggaatacaggcaagtatcaccatgtcaggcatttttttcatttttgtagagagagaagacttgctatgttgcccaagctggcctcaaactcctagaatcaagagatctgcccatctcagccacatgagtaactggggccataggtacataccatcatgcctggctatatttattttattttattaaatttattttttttatttttgtagagaggaggtcttgctgtgttgcccaggctgctctcaaactcatggccttaaaacatactcccatctcctctgcctctcaaactgttggaactataggtgtgagccactgtacctggccTGACTTGGGATTTCTTTTATCTAGCATCCTTTACTTGGTAGGATTGGGAAAAGCAGTAGTGTTTTTTAAAATTACTTAATAATTCAATCAGAATCAAACtcaaccttgaccactgccttctctcacagctcacatccagtctgtcaggaaatcctactgactgacttcaacatgtatccaggctctaaccatctctcaccaccaccatgaaccccgtcaggatcactatcatctcccaccgggatgttgccacagcttggctcccatgcttctacccaaatcttcccatagtctttctcaactcggcagccaggtcgtgcttttaaatcaggagacggatcatgtcgcctctctgctcagaagccctcggtggttcccattttagtcagagcaaaagccaaagccccagcaatagcgtcccagggcttacacgatctgtaccgatcccagcccagcaactccctggcctcctcgctgacttcgctcc----atctctttgctccactggcctccttccagagcctcagacacaccagagagtttcctcctaatgcctttatcctgttgactcagcctacaatgctcttccctcagcaccttggccagc

tccatcacctgcttcaaacttttgctcaatattcacttatgaggccaaccctgaccactctacttaacactgccatctgtccccattcccaccatgctcatttctttctttctttttgaaacaagatcttgctttattgcccaggctggagtacactggtgcaatcacagctcacagcaacttcaacctcccaggcttaaacaatcctcccgcctcagccaccctaggaactgagactacagctgcatgccacaacacatggc------ttttatttttttttttttgagacggagtctcggtcgcccaggctgaagtgtaagggtgcgatcttggctcactgcaatgtctgccttttgggttcaagtgattctctgcctcccaagtagctgggattacaggcacccaccaccacacctggctaatgtttgtatttttagtagagatggggtttcaccatcttggctaggctggtcttgaacttctgacctcgtgatccaccctcctcggcctcccaaagtgctgggattacaggcgtgagccactgcgcctggcctttaaaaaaatattttttttagacatgaggtctcattatgttgcccaggctggtcttaagctcctgggcttaagcgatcctcccacctcagcctcctaaagttctgggattacaggcgtgagcaactgTAACATGAGGTCCCAGCTTCgtgttcattttttgttgttgctacaacaaagtaccctacatttagtggcatcaaacaccacaaatctaccatcttacagttctgggggccagaagcccaactaggtctattaaggctaaagtcaaggtgtcagagaggctgcattccttctgggggaggctctagacagaatgtgctcctttgccttttccagcttctagaagccacccccattccttgacttacctcgtgactccatattcaaggccagaagtgcagcatcttcaaatctccctctctgacctc

ttcttccattaccacatcactttctctaattctgactctcctacctcattctcttataaagatccttgtgattGGTgggtatgggggctcccatctgtaatcccaacattttgggaggccaaagaggaaggattgcttgaggccaagagttagagatcagcctggggaaaataggaagatcctgcctttac------aaaattaaaatcagctggacatggtgatgcatgcctgtagttccagctactggagaggctaaggtgggaggattgctttagcctaggaggtcaaggctgcagtgagctatgatcacatcactgcactccagcctcagtggcaga--gtgagactctgtctccgatataagaaaagaaatatacatttggtctctgcccgtggttcctggcatagagcttccaaagctcttataaagcccttcgtgacagaggtaataggagcattttctgttttgatatttagtcttagtcccaggttcctgacacaagggcctctaaggtctttcagatctgcagcatggtaagaatgcatgtgggatgctgttgagctaacggggtggctgcaagctccgagactgcttcaggaggagggctagctgccagagaaagcaaccacattttttttttaaaacagagtttggctcttgtagcccaggctggagtgcaatggcacaatctcagcttgctac

+s panTro2.chr1_random 7184740 12479 +   9420409
tacttgagaggctgaggtgagacagtcgatttagccgaggagtttgagatcagcctggacgacataactaaatctcatctctacaaggacgaggtgggaggatcacttgagcccaggaatttgtggccagcctgggcaacaaaagaagaccccatctggccgacatggccaacctggccaccatggtgaaactctgactctacaaaaatgagctgggcatgggtgacatgcatgtgtagtcctagctacttgggaggttgagatgggaggattgcttgatctcagaaggccaaagctatagtgagctatgatcacatcactgcactccagcctggatgacacagggagattctgtctcaaaaaaaagaaaagaaatatatatttaatctctgtccctggttcctggcacagagcttctaaagctcttacaaagacctcagtgatagatgtgacaggaacatcttttgttttaatatttggtcttggtcccaggtttctaacacaagagcctctaagaactttgggatctccagcatggtaagaatgcatttggggatgttgttgagatgaccgggtgactgcaagctcctaaatttcttcaagaggagggctgattaccatgcaaccacatggtaagaggcttggaactttcagcctcatgcactgaactccagggggaagaggggctggagactgacttaatcatcaacagccaaagattttatcaatcatgcttgcataataaagcctccataaacaccctgaaaggggtttgcagagctttcagggttgctggacacaggagatgctgggagggtcgcatgttcaacagagggcatgggagctctgtgcccctccgaacttaacttgccctgggtatctttctttttttttgagacaggatcaggctcttttgtccaagctggagtgcagtggcacaa

tctcagcttactgtaacctaagcctccccagtccccagctcaaggtatcctctcatctcagcttccctagtagttggaactctaggtgcacaccaccacaccggttattattattattttttaattttttatagagacaggttttcaccatgttgcccaggctggtctcaaactcctgagtttcagcaatcctcccaccttggcctcccaaagtgctgagattacaggcatgagccactgcatccagcatgcacgtctctttcattgactgtttctgagatgtatccttcacaatgaaccagtaataggaaatgaactggccagatgcggtggctcacatctgtaatcccagcactttcagaggctgaggtgggaggatcacttgagaccaggaatttgtggccagcctggccaacacaacaagaccccatctatacaaaaaataaaagaaactagccagatgtggtggtgcaggcatgtagtctcagctactagggaggctgaggtgggagaaccactggaacccagacaatcaaggctgcaatgagctatgactgcaccattgcacaccagcctgggcaacaaaataagaccctctctctcagaaaaaaagaaaataaaccgtttttctgagttccgtaaactgttctagcaaattattaaacccaagaagacagttatgggaacccccgattggtaacaggttggtcaaaagtatggtgacaacttaggacttgccattggcagctgaagtgaggatggcctcgtgggactgagcccctaacttgtggggtctgtgctaacttcaggtagtgtcagaataaagtcatgggatacccagttaatatccagagcactgaagaatttggtgtagaaactccatacatacattcagtcggaagtgtgtgagtagagacaaacaTGGGCTTTTCTGTCACCTACCTGCTTAACTGCATAGgagaggcaatatgtggtgctcatgaacaaag

caaacattaaagtcagaccagacccaacatttgactcagtcttaatatccaggtgagcctgcgcaaatcattcattattcctaaggctt-catcactccattcataaaatggggataactgtggcacctacatgtgattctgtgagaattaatgaaatattatgcttgGGGTTATTGTGATCATTATACCTGTTCCAAACTATTTGACAAGGACAGTGATGGATGAAGACATCAAAAAATCAGAAACTGCAATGAGGTCTCTCAGGCAAAATTCCATACAAGCAAATTACTGTGTCTACAAAGCATTCCTGCCACACTTAATTCACCATTCCCTGAACAAAATATGCCATCTTCGTTGTTCAGGTCTGTACAGTGCTGGTTTCCCTTCCCGGGCAGTTTGCGCTATCCCATCCCGGCCCATTCCCCATCCCTCCACCTCCCCCTTCCCTCCCCACTCTCATACAACTCTTCCTCATCTTTCAGGACTTGGCTTCAATGTCACCTTAACTGGAAGCTTCTCTCACTCTCCAGAAGAGCTTCCCATTGCACTTGATGCATGC--ACTATTATTTGATCATTTTTAAGTTACAGTCCAAATCTTTTTGTACCTGAATAACATGTTGCCCAGTCAGTCTCTCTTCCTGGATTCAGAAGTCCTTCATGGTAGATCCAGCTGGAAGTGACAAAAAGATATCTTTTGACATAAAGGGATGACACAGACAGACATAAGTTCTTAAATGTCTTAAATGTTATGTGAAAATTAAACAGAATTCAAAGACTTGTGGGGAACACTTAGGAAGTTACTGGGAATGTCATAAAGGGTTAAtttg---tttttttttttttttgagacagtctcattctgtcacctaggctggagtgcagtggtgcaatcaggctcactgcagccttgaccacctgggctcaagtaatcTC----AATTTTTATTTGGTTTAAGAAAGTCTTGGTTGAGGgtggtggcttatgc

ctgtaatctcagcactttgggaggctgagagaggtatattacttgaggccaggagtttgagatcagcctgggcaatatattaagaccctgcctctaccaaaaaACAGAGTGAATGTgtggaagacaatttttccacagactgggagtgagggaataatttcaggatgattcaagtgcattacatatattgtgcactttctttctattattactacatagtaatatataatgaaatgattctacaactcactataacgtagactcagtgggatctctgagcttgttttcctggaactagactgtccatctggggtgatgggagacagtaacagaatatcaggcattagattctcataaggagtacacaacctagatccctcgcatgcacacttcacaacagagtttgtgctcctatgagaatctaatgctgctgctgatctgacaggacatggagctcaggtggtcatgcaagtgatgggaggggctagaaatacagatgaagtttcccttcacttgcctgctgctcacctccagctctgtggccctgtGGTTGGAGACCGCTGCTCAAGTGCATTTGAAAGGATCCATCCCACGCCATTCTTCAGAGTCATCTTTACTGCTGCAGTGGTCAACTTGTAGCACCCCTAAGCTCACAGGACATATGCTTCAACTGGCATTTCACAATCAACAGTATGTGGCAGCTTGAGTCATTGTGAGCTCACTTCCTGGAAATCACCAGCATCCCATATCCCATTAGCAAGGAGCTCAGCACTGCTCCTTGGATAACCAAACCTATTCCCAAATCCCATCCATGTGCGTCTATCTCCTGGTACCCTTCCTAGCATCAATTCTGTATTTGTAGGAGTCCAATCAGGAGACACAAACCACTCAAAAGTTTAAACTAGAATGAGCAAgatggttcacacctgtaatcccagcactctgggaggccaaggtgggtggactgctttgagctcaggagtttgaga

acagtctgggaaacatggcgaaacctcgtctctacaaaaaacacaaaaatcagctgggtgtggtggcacttacctgtaatcccagctactcgggaggctgaggcaggagaattgcttgagcctggcaggtggaggctgcagtgagcagaggttgtgccactgtactccagcctgggtgacagtgtgagacccggtatcaaaaagaaaaaaC------------------------------atatatatatatatatatatgtaAATTTAATATAAAAAGTATTAATTTTggccaggcaaaatggctcatgcctgtaatcccagcactttgggaggccaaggcagacagatcacctgaggtcaggagttcgagaccagcctgaccagcatagagaaaccccatctctactaaaaatacaaaattagctgggcatggtggcacatgcctgtaatcccaactactcaggaggctgaggcaggagaatcgcttgaacccggcaggtggaggttgcgctgagccgagatagtgccattgcactccagcctgggcaacaagagtgaaactccatctcaaaaaaaaaaaaaaaaGGTATTAATTTTTACAGAGGATCAGCACAATGAGGGACACACTAGCACAAAGTAAAGACAACTCTAGAGAATACAGAACTAGCAGAggccaggcattgtggctcatgcctgtaatcccagcaatttgggaggcctaggcaggaggatcgcttgaggccaggagttggagaccaatcagtgctaaatagtgagactctgcgtctaccaataaaaagagatattagccaggtgtggtggtggtgcacacccgtagttccagctacttgggagtctggggtgggagaaatcccttaagcctgggaagtctacactacagtgagcccagattgtgccactgcactccagcctgggcgacagagtgagaccctgtcttagaaagaaaaaagaaaagaaaGTGTTAA

ACCCCCTATGGGAATCTCCTCTTCTCCTGCCCTCTCTGGAACCTCACTTGTCGGTTCTTCCTCCCACTTTCCTGTATCTTTAACCTAACCCCCACTTTTAGCTCCTTCCCATCATCATTTAAATTACTCAAACTTCTTCTGTTTTAAAAACCTCTCCCTAAACTCAGGGAGAGGTCTCCTGCACACCCATTGAGCCATCGGCTCTCCCTGGTGCCTTCTCTATAGCAGCCTGAGCCATGTCTCTAATCCATGAATCTCATCATGTTACTCCCCCATTTACATCACTTCTCCTTGCCTCAGGGATTAAGTCCAAACTCCTTAACAGCCCCTGCTCTGCCCTGCCTTGCAAGGCAGcctcactgcttgcccctctccatttcatctgctatggagtccaactgagcctcatctgccccttgaacacacactctttctcctctgggagtctctgaagtgggtaatatcctctgcttatagtatgcttccccttaaacctctactctcttcctagctagctttgactcctctgtcacttgtccgctttggcatcacctcctcatagaagacttctatgactcccgagATTCTCAGGAGCATGGCAGGTGAAGTGctcctcccatgaatggatggagattagggagtgtgtgttattcatgcttaattcaccagtgcttagctgagtacctggcataaaatagttactGTGGTGGCCAAAGTAATAACCCCCACCGCCACCAATTGCTCATGTCCTATGTTACACAGCACAAttacataggaagggggaattaagagtgcagataaaattaatgttgctcatcagctgaccttaaaacaagattatcctggagtatctaggagagcccatgtaattacaagcattctttaaaactggaagagggaggcagaaggttaagaaccagagacggTgggcacaatggctcatgcctgtaataccaatactttgggaggccagggcaggaaaatccctt

gagtgcaggagttcaaggtcagccgtggcaacatactgaggtcccatctctacaacaaaataaaaacaaaattcactgagtgtcacgatgcttacctgtagtcccagctactgggaaggctgacatggtaggattgcttgagcctgggagtttgaggctataatgagccatgataggaccactgaactccatcctgagtgacagggaaaggtcctgtttctgaagaaaaaaaGGACATTGGAATCAGGGCCCTCTCCATCCTGAGGTGCCTACAAGGCATCTCTCTCTGCAAATGAGTAAACATCACCCTCCAACTCCTTACAGAGTGGAGCAACAGGAAAACTCCTTCACCTCATTTCTGTGCTGCTTGGGAGGCCTGGACAGCCCAATAACCAGCTCCTTGCTGATGAAACAATCAGGAAATGGCTCGAGTTGAGCTAAGGAGAATTTGGATCCTTCTTTTGGTTCTCAGTAGGCAGGGTAGGggccaggcatggtggctcatacctgtaatccttgcactgtggggggccaaggtgagaggattgcttgaggccaggagctcaagaccagcctggacaacatagcaagacctgggtggcatacacctgtggtccctactacttggtaggatgaggtgggaggattgatcacttgatcccaggagtttcaggctgcaatgagccatgatcacaccactgcacttcagcctgggtgacagagccagaccatgtcacaaaaagttagaaagaaaaaaaaaaaaGAGAGAGGGAGAgagactatacacaggcaccaccacatttggctaatttttaaatattctgtagagacaaggtcttgctaggttgcccaggctagtctaaaactcctggcatcagactgggcatggtggctcatgcttgtaatcgcagcactttgggaagctaaggcaggcaaatcacctgaagtctggagttcgagaccagcctggccaacatggtgaaactctg

actctatcaaaaatacaaaaattagct-ggcagtagtggcgtgtacctgtagtctcacctactcgggaggctgaggcaggagaatcacttgaacctgggaggtggaggttgcagtggaccccatcactgcactccaccctgggtgacagagcgagactctgtcaaaaacaacaacaacaataacaaaaacaaaaacaacaacaacaaaaaaaactcctggcatcaagacatcttcctgtcttagcctcccaatgccctgggattataCTGTTTCCTATAATTGAAGACGCTTGTTCTTATACTGCTTTAAGGTATAAAGGAAG-AAaaaaaaacagataatggcaaatgttggtgaaggccgggcatggtggcagcctgtaattccagaacttagggaggctgaggtgggtagatcacttgaggccaggagtatgagaccagcctgggcaacatggtaaaatcccatcactacagaaaaatataaaaattagccaggcatggtggcgtacacctgtaattttcagctactcaggaggctgagatgagagaatcacttgtgcctgggaggtcaaggctgcagtgaactgtgatggcatcattgcactgcagcctgagagacagagcaagcccctatctagaaaaaaaaaaatgtcagtgaagatgtggaggaactggaacccacacacattactggtgggaacataaaattgtgtaaccattttgTTTGGGTATTTCTTTTCTTGTCATTTTAATTGGATTTTTAAAAAATCAagacagggtttcactatcttgcccaggctggtcttgaattcatgggctcaagccatcctcctagctgagcctcctgagtagctgggattacaggtgtgagccattgcacccaactggtgtagccacattagaaaacagtctggcagtttctcaaaaggctaaatgtacagtcatcctatgatgcaacaatttcactcctaggcatatatcccagaaa

aataaaaatatatgtccacacaaaaacttgtacaacaatcttcatagcagcattattcataatgaccaatacatggaatacatggaaacaacccaaatatccaccaactgatgaacagataaacaaaatgcagtgtgtctctaccatggaatactgccatagaaggaatgaaatattgatacacactatgacataaaggaactttgaaaacactgtgctaagagggaaaaaaagccacaaaagatcacatattgtacaattctatttgtccagattaggcaaatctatagtgacaaaaaaattaatcaatggttgcctaaggctgggggcgaaggtaggtggggagagtaggaggtagtggctaaggggtatggatttctctatagggtaatgaagggttctaaaagtgactgtggtgatcgatgcacagctctgtgaatattctaaaacctactggattgcagatttcaataaataaagtgaatggtatgtgaatattttaataaagctattaTTTAAAATAATAATAATAGGGggctgggcacaggtggtcatgcctgcctgtaatcccagcactttgggaggctgaggcaggaggatcacttgaggtcaggagttttgagcccagtcggagcaacgtggcaagatcccgtctctatgataaaaaattagctggacatggtggcacatgtctgtagtcccagctacttgggagactgaagtgagagaaccgcttgagcccaggagtttgaggctacagtgaaccatgatcatgtcactgtactgcagcctgagcaacagagcaagatgctgtctctgaaaaggaaagaaaacaaaTGCAAGTTTTTATCACTTTGTGAGTGTAGCCAAGTTGGAGGAGAAATAGACAATAATAAAAGAGCACTGAATAATGACGGTGAGTGGCTGGTTAGGCTCAGTTGCTAGCTAAATGGCTTCTAAAAAATTCAATAAAGTTACAGCTCTGGGGA

CAGTCATGTAGTCAAAGAATGAACACAAAATTCATTACAATTGCCCATGGTCTTTATTTACATGCCTTCTAGTGAAAAATTCCTAAGTGCCTAAACAGCAAGTCTGCAATGATAGCAGCTGTTTATTAAAGACTACAAAAAAGAAATGGAggccgggcatggttgctcacatctgtactccttgaattttgggaggctgaggcaggcagattgcctgagatcaggagctccagaggagcctggccaacatggtgaaaccccatctctactaaaaatacaaaacttagctgggtatggtggcgggtgcctgtaatcccagctactcgggaggctgaggcaggagaatggcttgaacccagaaggtgaaggttgcagtgagccaaaatcgcaccattgcactccagcctgggtgacaagagaaagactcttatcttaaaaaaaaaaaaaagaaaaaaaagaaaTGGCATCTTCTTCAAGAATTACATCATGTTTCATGATAAAGAAGCTCTAATTTTGCATTTGTTCAAGTATTGATGATATTTACCCAATATGACACCCATCTTGGATAAAATGCAAACAACACAATTTCATTTTCTCATTAACAAAACCGATTAAGTAGTCTAATATAAATTCTGATCTTATTAAAAACTGATCAGATTTTAAAAATTATGGaattatggagccaataagatgttacaacctgtaccaaggggaattccaaaatccacacatatctgagaccatcaagtatgatgaaatatatttgATTACTATATTGAAAAATAAACTGATTACATAGCCAACAATTGGACAGGGGTCTCCTCATCCACAGCCACACAAACCCGATCATGCAGCTATATGGTTACAAGGCCTACATAGCCTAGAAGGGACTGGTCTGACTTGAGATTTCAtttgtatttgtattttgagacagggtcccactctgtcacccaggatggagtgcagtggtataatcatagctcactgca

accttgaccaactgggctcaagagatgctcctgcctcagctgcccccatacctgggaatacaggaaagtaccaccatgtcaggcatttttttcatttttctagagagagaagacttgctatgttgcccaagctggcctcaaactcctagaatcaagagatctgcccatctcagccacatgagtaactggggccataggtacataccatcatgcctggctatatttattttattttattaaatttattttttttatttttgtagagaggaggtcttgctgtgttgcccaggctgctctcaaactcatggccttaaaacatactcccat---ctctgcctctcaaactgttggaactataggtgtgagccactgtacctggccTGACTTGAGATTTCTTTTATCTAGCATCCTTTACTTGGTAGGATTGGGAAAGGCAGTAGTGTTTTTTAAAATTACTTAATAATTCAATCAGAATCAAACtcaaccttgaccactgccttctctcacagctcacatccagtctgtcaggaaatcctactgactgacttcaacatgtatccaggctctaaccatctctcaccaccaccgtgaacccggtcaggatcactatcatctcccaccgggatgttgccacagcttggcccccatgcttctacccaaatcttcccatagtctttctcaacttggcagccaggtcgtgcttttaaatcaggagacagatcatgtcgcctctctgctcagaagccctcggtggttcccattttagtcagagtaaaagccaaagccccagcaatagcgtcccagggcttacacgatctgtaccgatcccagcccagcaactccctggcttcctcgctgacttcgctccctctatctctttgctccactggcctccttccagagcctcagacacaccagagagtttcctcctaatgcctttatcctgttgactcagcctacaatgctcttccctcagcaccttggccagc

tccatcacctgcttcaaacttttgctcaatattcacttatgaggccaaccctgatcactctacttaacactgccatctgtccccattcccaccatgctcatttctttctttctttttgaaacaaggtcttgctttattgcccaggctggagtacactggtgcaatcacagctcacagcaacttcaacctcccaggcttaaacaatcctcccgcctcagccaccctaggaactgagactacagctgcatgccacaacacatggcttttttttttttttttttttttttgagaaggagtctcggtcgcccaggctgaagtgtaagggtgcgatcttggctcactgcaatgtctgccttttgggttcaagtgattctctgcctcccgagtagctgggattacaggcacccaccaccacacctggctaatgtttgtatttttagtagagatggggtttcaccatcttggctaggctggtcttgaacttctgacctcgtgatccaccctcctcggcctcccaaagtgctgggattacaggcgtgagccaccgtgcctggcctttaaaaaa--attttttttagacatgaggtctcattatgctgcccaggctggtcttaagctcctgggcttaagcgatcctcccacctcagcctcctaaagttctgggattacaggcgtgagcaactgTAACATGAGGTCCCAGCTTCAtgttcattttttgttgttgctacaacaaagtaccctacatttagtggcatcaaacaccacaaatctaccatcttacagttctgggggccagaagcccaactaggtctattaaggctaaagtcaaggtgtcagaggggctgcattccttctgggggaggctctagacagaatgtgctcctttgccttttccagcttctacaagccacccccattccttgacttacctcgtgactccatattcaaggccagaagtgcagcatcttcaaatctccctctctgacctc

ttcttccattaccacatcactttctctaattctgactatcctacctccttctcttataaagatccttgtgattGGTgggtatgggggctcccatctgtaatcccaacattttgggaggccaaagaggaaggattgcttgaggccaagagttagagatcagcctggggaaaataggaagaccctgcctttacaaaattaaaattaaaatcagctggacatggtgatgcatgcctgtagttccagctactggagaggctaaggtgggaggattgctttagcctaggaggtcaaggctgcagtgagctatgatcacatcactgcactccagcctcagtggcagagtgtgagactctgtctccaatataagaaaagaaatatacatttggtctctgcccctggttcctggcatagcgcttccaaagctcttataaagcccttcgtgacagaggtaataggagcattttctgttttgatatttagtcttagtcccaggttcctgacacaagggcctctaaggtctttcagatctgcagcatggtaagaatgcatgtgggatgctgttgcgctaacagggtggctgcaagctcctagactgcttcaggaggagggctagctgccagagaaagcaaccacaatttttttttaaaacggagtttggctcttgtagcccaggctggagtgcattggcacaatctcagctcactac

+
+a score=294155
+s hg18.chr1            142760 3236 + 247249719
aacctccacctcccgggttcaagcaattctcctgcctcggcctcccgagtagctggaattataggggtgtgccacaatgcctagctaactgttgttatttttagtagaaacggggtttcaccatgttggtcaggctggtctcaaactcttgacctcaagtggtccatgtgcctcagccttccaaactgctaggattacaggagtgagccaccgcacctggccccaaccacattttttgaggcttggaactttcagcctcacctgctgaactccaggaggcaaaaggaactggagattgacttaactaccaatggccagtgattttatcaatcatgcctccataaacacccaaacagcagggtttggagagcttctgtgttgctaaacacaaggaggtcctgggagggtagtgtgcccaacagagggcatggaagctctgtgcccctccccacttaccttgtcctgtgcatctctttcattggctgttcctgagatggagccattacattgagccagtaatagaaaataaggtggccagatgcactggctcatgcccgtaatcccagcactttgggaggcagaggtgggcggaatcacttgagcctaggaatttgagaccaacctgggcaacataagaagaccccatctatacaaaaaataaaagaaattagccaaatgtggtggtgggaaccctgtaattccagctacttgagaggctgaagcaggagaatcacttgagccctggacgttgaggcttcaataagctatgattacaccactgcacaccagcttggacaacagagcgaggccctgtctcttaaaaagaaaagaaaaaaaacttgtttttctaagttctgtgagttgttctagtaaataattaaactcaacaagagggtcatgggaaaccctgatttctaactggttggtcaaaatacaggtgac

aacctaggacttgcaactggcatctgaagtgagggtggtcttgtgggactgagcccctaacctgtgggttctgtgctaactctaggtagtgtcagaatggaattgtgggatacgcggttggcatccagagagttggagaactggtgtagaaactctgcacacacatttggtcagaagtctgtgagtagagagaaacGtgttgcaggaagtcagggaccccaaacggagggactggctgaagccacagcagaagaatataaattgtgaagatttcatggacatttattagttccccaaattaatacttctataatttcttaggcctgtcattactgcaatctctgaacataaattgtgaagatttcatggacacttatcacttccccaatcaatacccttgtgattttctatgcctgtcttta-----atctcttaatccggtcatcttcgtaagctgaggatgaatgtccccgcaggaccctgtgataattgcgttaactgcacaagttgtttaaacaatatgaaacctgggcaccttgaaaaaagaacaggataacagcaatttcagggaacaagggagataaccttaaactctggctgcctgtgggccgggttgaacagagccatatttctcttctttcaaaagcaaataggagaagtattgctgaattctttttctcagcaaagaacatccctgagaaagagaatgcatccctaaggggaggcctctgaaatggccgctttggggacggctgtcttttacagtcatagataagggatgaaataagccctgggttcgcgtggcgctcccaggcttatcaggacaaggaaattcccgcctaataaatgttggtcagatgggttgtctgctctcaaaccctttctcctgataagatgttatcaatgacaatgcgcgcccgaaacttcattagcaattttaatttcgccccagtcctgtggtcctgtgatcttgccctgcctccatttgc

cttgtgatattttattaccttgtgaagcatgtgatctctgtgacccacaccctattcgtacactccctcaccttttgaaaatcactaataaaaacttgttggttttgcggcttggggggcatcacggaacctgccgacgtgtgatgtctcccctggacatccagctttaaaatttctctcttttgtactctttccctttatttctcagactggctgacactcagggaaaatagaaaagaacctacatgaaatatcaggggtgaatttcccccgataTCACACTGGCTCTTCTCTCACCTGTCTACCTGCTTAACTTAATAGgagaggcaatgcatggtgctcatgaacaaggcaagcattaaagtcagaccagactaacatttgactcagtcctaatattcaggtgagcttgggcaaatcgctcattaaccccaagtcttcatcattttgtgcatataatggggataactgtggcacccacctgtttttgtgagaatcaatgaaatattatgcttgATGTTATTGTGATCATGATACTATCTGACAAGGGCAGTGATGCATGATAACATCAAAAAATTAGAAACTGTAATGAGGTCTCTTGGGCAAAATTCCATACAGGCAAATTACTGTCTCTACAAAGCATTTCTGCCACACTTAATTCACCATACCCTGAACAAAATGTGCCATCTTCATTGTTCAGGTCTGTATAGTGCTGGTTTCCCTGCCTGGGcagctcactccatcccatcccagcccaatccccatccctccacctcccccttccctccccactcTCATACAACTCTTCCTTATCTTACAGGACTTGGCTTCAATGTCACCTTAACTGGAAGCTTCTCTCCCTCTCCAGAAGAGCTTCCGATTGCACTTGATGCATGCACTATTATTTGATCATTTTTGAGTTACAGTCCAAGTCTTTTTGTACCTGAATAACATGTTGCCCAGTCAGTTTCTCTTCCTGGATTCAGAAG

TCTTTCATGGTAGGTCCAGCTAGAAGTGACAAAAAGACATTTAAAAAAAAAAAAAAAGAGGGATGACACAGACAGACATCAGCACTTAAAAGTTTTAAACGATATGTGAAAAACAAAATTTAAGGGCTTCTAGGAGAAATGTAGGAGGGAAGGTGTTACTGGGAAATATGATAGAAGGTTAAtttttattttattttatttttagagaaagggtcttgctctatcacctaggctggactgcagtggtgcaatcacagttaactgcagcctcaacctccagggcttgagcaatattcccatctAAtttttattttgtttaag

+s panTro2.chr1_random 7199179 3214 +   9420409
aacctccacctcccgggttcaagcaattctcctgcctcggcctcccgagtagctggaattatagggatgtgccacaatgcctagctaactgttgttatttttagtagaaacggggtttcaccatgttggtcaggctggtctcaaactcttgacctcaagtggtccatgtgcctcagccttccaaactgctaggattacaggagtgagccactgcacctggccccaaccacattttttgaggcttggaactttcagcctcacctgctgaactccaggaggtaaaaggaactggagattgacttaactaccaatggccaatgattttatcaatcatgcctccataaacacccaaacagcagggtttggagagcttctgtgttgctaaacacaaggaggtcctgggagggtagtgtgcccaacagaggacatggaagctctgtgcccctccccactt----------gtgcatctctttcattggctgttcctgagatggagccattacattgagccagtaatagaaaataaggtggccagatgcgctggctcatgcccgtaatcccagcactttgggaggcagagatgggcggaatcacttgagcctaggaatttgagaccaacctgggcaacataaaaagaccccatctatacaaaaaataaaagaaattagccaaatgtggtggtgggaaccctgtaattccagctacttgagaggctgaagcaggagaatcacttgagccctggaggttgaggcttcaatgagctatgattgcagcactgcacacaagcttggacaacagagcgaggccctgtctcttaaaaagaaaagaaaaaaaacctgtttttctaagttctgtgagttgttctagtaaataattaaactcaagaagagggtcatgggaaaccctgatttctaactggttggtcaaaatacaggtgac

aacctaggacttgcaactggcatctgaagtgagggtggtcttgtgggactgagcccctaacctgtgggttctgtgctaactctaggtagtgtcagaatggaattgtgggatacgca-ttggtatccagagagttggagaactggtgtagaaactctgcacacaaatttggtcagaagtctgtgagtagagagaaacGtgttgcaggaagtcagggaccccaaacggagggaccggctgaagccacggcagaagaacataaattgtgaagatttcatggacatttattagttccccaaattaatacttctataatttcttaggcctgtctttactgcaatctccaaacataaattgtgaagatttcatggacacttatcacttccccaatcaatacccttgtgatttcctatgcctgtctttactttaatctcttaatccggtcatcttcgtaagctgacgatgaatgtccccgcaggaccctgtgataattgcgttaactgcacaagttgtttaaacaatatgaaacctgggcaccttgaaaaaagaacaggataacagcaatttcagggaacaagggagataaccttaaactctggctgcctgtgggccgggtggaacagagccatatttctcttctttcaaaagcaaataggagaaatattgctgaattctttttctcagcaaagaacatccctgagaaagagaatgcatccctaaggggaggcctctgaaatggccgctttggggacggctgtcttttacagtcatagataagggatgaaataagccctgggttcgcgtggcgctcccaggcttatcaggacaaggaaattcccgcctaataaattttggtcagatg-----tctgctctcaaaccctttctcctgataagatgttatcaatgacaatgcgtgcccgaaacttcattagcaattttaatttcgccccggtcctgtggtcctgtgatcttgccctgcctccatttgc

cttgtgatattttattaccttgtgaagcatgtgatctctgtgacccacaccctattcgtacactccctcaccttttgaaaatcactaataaaaacttgttggttttgcagcttggggggcatcacggaacctgccgacatgtgatgtctcccctggacatccagctttaaaatttctctcttttgtactctttccctttatttctcagactggctgacactcagggaaaatagaaaagaacctacatgaaatatcaggggtgaatttcccccgataTCACACGGGCTCTTCTCTCACCTGTCTACCTGCTTAA-----TAGgagaggcaatgcatggtgctcatgaacgaggcaagcattaaagtcagaccagactaacatttgactcagtcctaatattcaggtgagcttgggcaaatcgctcattaaccccaagtcttcatcattttgtgcatataatggggataactgtggcacccacctgtttttgtgagaatcaatgagatattatgcttgATGTTATTGTGATCATGATACTATCTGACAAGGGCAGTGATGCATGATAACGTCAAAAAATTAGAAACTGTAATGAGGTCTCTTGGGCAAAATTCCATACAAGCAAATTACTGTCTCTACAAAGCATTTCTGCCACACGTAATTCACCATTCCCTGAACAAAATGTGCCATCTTCATTGTTCAGGTCTGTATAGTGCTGGTTTCCCTGCCTGGGcagctcactccatcccatcccagcccaatccccatccctccacctcccccttccctccccactcTCATACAACTCTTCCTTATCTTACAGGACTTGGCTTCAATGTCACCTTAACTGGAAGCTTCTCTCCCTCTCCAGAAGAGCTTCCGATTGCACTTGATGCATGCACTATTATTTGATCATTTTTGAGTTACAGTCCAAGTCTTTTTGTACCTGAATAACATGTTGCCCAGTCAGTTTCTCTTCCTGGATTCAGAAG

TCTTTCATGGTAGGTCCAGCTAGAAGTGACAAAAAGACATTT-AAAAAAAAAAAAAAGACGGATGACACAGAAAGACATCAGCACTTAAAAGTTATAAACGATATGTGAAAAACAAAATTTAAGGGCTTCTAGGAGAAATGTAGGAGGGAAGGTGTTACTGGGAAATATGATAGAAGGTTAAt-----ttttattttatttttagagaaagggtcttgctctatcgcctaggctggactgcagtggtgcaatcacagttaactgcagcctcaacctccagggcttgagcaatattcccatctAATTTTTATTTTGTTTAAG

+
+a score=112167
+s hg18.chr1            145996 1215 + 247249719
aaatgcagtcttgctcttagcaaagctaaagtgcaatggtgtgatcatagcttactgcagcctcaaccttctagactcaagtgatcctccagtcttagcctccccagtagctcggactacaggtgtgcactgcaacgtgtagctcattttttttttttaatttttagtagagacaaagtgtcactatgttgaccaggttggtggtgatctcctacactcaggcagttctctcacctcagccttccaaaatgctgggattacaggtgtgagctgccacacctggctGAGGGGGTTAATTTTTAATTATATAAAGAGCTCAAAGCaaatattagaaggagcctaaatgcctccagcagttgactggtactggtaaattgtgatacatccatataataaaatattatgcaaccatgaaaaggattaagatagatcaataggtattgGCACAAATGTCCACGAAATATGAAAATATGAAGTGATGTTCAATCACCATGTACGTATCTTGAAGGATATGGCCCATTTTCTCAACTGCAATTATTTCCTGAGATAAGATTATGGGTCTAAAGAGTGAAGGACATTTTTCACttatttaaaagtatttatcatttttataatttaataaaaGATTAAACAGATCATTGAATTAGTAAAAGACAAAGTAACTCTATAAATAAATGGAAAAGACACAGATACCccaggcatggtggctcatgcttataataccagtactttgggagggggtggtggggggattgcttgaggccaggagttccagaccagcctaagaaacaaagcaagacctcctctctagtaaaaataaaaaaataaaaataattggccaggcatagtggcatgtgcctatagtcccaactactgaggtggaaggatcacctgagcctaggaggtcaaggctgcagtgagttgagactgtgccactacact

gaagcctaggagacagagcgagacttcatctcaaaaaaaaaaaaaaggacaataaagaaaTAAAGCTAATAAGCTAACATAAGGAAAGATAAAATATGTGACAAATAggctgggcacatggctcacagctgtaatcaagcactttgggaggccaaggcgggtagatcttgagatcaggagttcgagaccagcctgatcaacatggtgaaaccacgtttctactaaaaatacaaaaattaaccaggcatggtggcatatgcctgtaatcccagc

+s panTro2.chr1_random 7208475 1214 +   9420409
aaatGCAgtcttgctcttagcaaagctaaagtgcaatggtgtgatcatagcttactgcagcctcaaccttctagactcaagtgatcctccaggcttagcctccccagtagctcggactacaggtgtgcactgcaatgtgtagctcatttttttttta-aatttttagtagagacaaagtgtcactatgttgaccaggttggtggtgatctcctacactcaggcagttctctcacctcagccttccaaaatgctgggattacaggtgtgagctgccacacctggctGAGGGGGTTAATTTTTAATTATATAAAGAGCTCAAAGCaaatattagaaggagcctaaatgcctccagcagttgactggtactggtaaattgtgatacatccatataataaaatattatgcaaccatgaaaaggattaagatagatcaataggtattgGCACAAATGTCCACGAAATATGAAAATATGAAGTGATGTTCAATCACCATGTACGTATCTTGAAGGATATGGCCCATTTTCTCAACTGCAATTATTTCCTGAGATAAGATTATGGGTCTAAAGAGTGAAGGACATTTTTCACttatttaaaagtatttattatttttataatttaataaaaGATTAAACAGATCACTGAATTAGTAAAATACAAAGTAACTCTATAAATAAATGGAAAAGACACAGATACCccaggcatggtggctcatgcttataataccagtactttgggagggggtggtggggggattgcttgaggccaggagttccagaccagcctaagaaacaaagcaagacctcctctctagtaaaaattaaaaaataaaaataattggccaggcatagtggcatgtgcctatagtcccaactactgaggtggaaggatcacctgagcctaggaggtcaaggctgcagtgagttgagactgtgccactacact

gaaacctaggagacagagcgagacttcatctcaaaaaaaaaaaaaaggacaataaagaaaTAAAGCTAATAAGCGAACATAAGGAAAGATAAAATATGTGACAAATAggctgggcacatggctcacagctgtaatcaagcactttgggaggccaaggcgggtagatcacgagatcaggagtttgagaccagcctgatcaacatggtgaaaccacgtttctactaaaaatacaaaaattagccaggcatggtggcatgtgcctgtaatcccagc

+
+a score=1066337
+s hg18.chr1            147211 11682 + 247249719
taATAGGAGGTCTTTCATTTATCACACAGAAAATAACTTGTTAAATTataatacctgtgtgggcgaaggtgcagtgaaatggccattttcttgtagtattagtggtgtttaaaatgtatataagccttccagcataaagcttggaaattttttttaaatcatacagacagtgactcattatactgcctcctccaactcctggcctcaagcaatcctcccacctcagcctcccaaagtgctggaattacaggctgacagccaccatgcctgaaagctttgcaatttacatcgagggtaataagaatgctcatgccctgtgactcacagtaatctcacttctggaaatttcacctttggatataattcaacctaaacaaaaggtcatatgcacaaACACAGTGAAAATCTGGGAGTAATTTTTTTCTCTTTTTTTAAaaaaatatggaatgcttcacaaatttgcatgtcattctttcacagaggccgtgccaatctctctattgttccaacttaagtatgtgtgctactgaggcaagcaTGAGTAATTTAAGATAGGGTGGTTAAGTGAAATAAGGAAGAATTATGGAGAATTTAAAAATCTATGCTATTTATAggcacctagtaacagctcagtaaatattagctgctactattATTATTTTTATGGTAATTTCACTCAATTAAAAACTGTCGTTAAAAATTGCCATTGTCATGGAACATAATGTCTCCTACTGTATAATTGTAGAAACAGATACAATttgtcccttggtatatggggggattagttccagctctcccatttctgtgtataccaaaatccacgcatactcaagttttcaaagtcagtcctgtggaatccacatataACACAAATGGGaaaattagtgaggtgtggtgacaagcacctgtagtcccagctacttgtgaggctgaggcaggag

gattgcttgagcccaggaggttgaggctgcagtgagccataattgcaccactacactccagtctgggcaacagagtgagacAGAAGGTTGACTTTTTAATAGAATTTTTCTGTTCACTTGAAGATATGGTCAGGATTGTGGCATATGAAAATTCTTCATAAAATAACTATCTAATCCAATTAATGCTGGAATTGGGAACAGCAGAAGTGTCATCTCAGAGCTACTCGCAATGAAAGGTGATGTCTGGGGCTCAGGTGTGTTGAGGTCCCCATGCCTGGACTATGGGTGCTGAGTGGGATTTACTTGTCCATCCATTTTCTATATTCCAGCACTGGGAAACTAGGG-------------------------------------------------------------------------------ACAGTACTTGTTCTCAAGGGAATCTTCAGCTTAGGTGGCTCTGTAAAAGAGAAATTACATCATTGAAAAATCGTCGCAggtcaggtgaggtggctcatacctataatcccagcccactgggagactaaggcaggaggattccgtgaggccaggagttcaagaccagcctgagcaacacagtgaaacctcatctctacaaaaaattagaaaatgaactgggtgcggtaaaacattcgtatagtcccagctactctggaggctgaaataggaggatcgcttgagcccaggaagtggaagctgcagtgagctctgatctcaccactgcactctagccttggtgacagagtgagaccctgtctcaaGacacacacaaacacacacaca--------cacacacacacacCCCCAATCTCACTCTGTCCAGCCTTGACTAATCAAAAGGGCCTTCTGGTTACAGAAGAGGTATGCTCTTTTGTAGGACAGGGAGAGACCAGCAAGCTTGTTCACAGACTTTTCCTCATCCTCTGCTTAGTTTTCCAAGAACCCTCACAGTGGAAATGGAG

TCTCTGGGAAAATGACCTAAATCTTTGGGTTACCAGGGGAGAAATATGCCTCCTTTGTCAATTAATAAATGGAACATCTGCCTTAAAATCCAGGGAGTTCTGCTAGAATGAATCACTCCCTAAGACCCTGACCAATGCATGGAACATGAAAAACTGAAGTTTAActgggcgcggtggatcacgcctgtaatcccagcactttgggaggctgaggcgggcggatcacctgaggtcaaaagttctagatcagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattagttgggcatggtggtggacacctgtaatcccagctacttgggaggctgaggcaggaaaatcgcttgaacccggaaggcggaggttgcagtTACTTCTAGAAGAATTTCCATTAGCCCTTTGAAATCCTTCAACATTCATGAAGGCCAAAGAGTTTTCACCTAATTTAATCTGATGGGTATGTGACCAGAGTCTTTCTAGGGAATAGAGACTCCCAAACAGTTCGACTGGGAAGTGAGGAGAGAATTTATTACTCAAAACCAAAGGGAAATGAAAAGAGGCCAACATAGAATGTCATTATTCTTTCTTGGCGGGGAATGGATTCCAGAGTCATTCTGTGACCTTTACATGACCTCCTTATTAGCATCTAAAAGCTTCCAGTGTAGGATGCAGCCAGCTAGGTTCTCTTCTAATGTAATAAAATTTGCTTCGGCAAATCTTATGCAGAGCCATCTCCAGGCTCCAGAAACAATAGGCTATAAATTACTGGATCTCCCATTTGATACAATGAAGTATGAGCATGGTCCTGAATGACTCCTCTACATACTACTCTGGGTGGCTTGAAGTGAATTTGATACAAGAACTGGAGCGAGGGCAAAGCAGAGCTAGATCTAGGATTAATGTGCTTGGGCCCAGCTCCTCACTACTCACCTATGAGTCTAGTTCCAGAACCCAAGTAGAGGATGGGGAAAC

AAGGCTCCTGACTTTTTTTCCCTAATATCTGCATCTCTTTCACATTTCTTATCTCCTTGCAAAGAAACTAAACAGGCTCAACTGAAATAACTAAATGATTAAACCCTATACAGAGAATCTCCAAAGACTGACAAAATATCATTCAAGACTGTTACACAGACAACCTTGAGGATGACTTGATGTACCAGTGATCTACAATATTTGGGATCATTCCAAATTCCCATCAAGGATCTGCCTATATCAACAAAGGAGCCAAGGACCAACCATTCAAATGGGCCCTGCTGCCAAGCC-TTTTTTTTTTTTTTTTAACAATGCCATCTCTTCATATTGTTCCATTTAACAAAACTGCAGCCCTTCATCTATCCTTAAGTCCCTTGGCCAGTGGTACAGAGCCAGAGTATGCTACTCCCTAGCAGGAAATCAACAGGATGACCTACTAAACACCATTCAGAAGATGCTAAGACCCATGAATTGCAACAGGAAAGAAAAGACAGAGAATTAGTCAGACAGGTACATGCTGTGCCAAAAGTGCACTACAGCCCCCACCCAATTCTGCCTAATCCTAGCTGGGCTGACACCAACCTGATGAGACAGGCCTATAAGATCTCAAACTAAAACAGAAACTCCTGAACTGGGTTCTTTCGAGCCCAGGAAGCAGCAGTAAATCATTAAAGAACAGATAAGTTCTTAAGGTGAGGGAGAGTTTCAGATAAATGGAATGCTGGTAGAACACAGGGCCCAAAGGAGCAAAAGTTAACCTAAGCCCAGGTAGAACCTTGTTTACTAGAGTATTAGGCATGGGTTTGGGCAACTATTCTAACCAGAGAAACTGGCTTCAGTGAGGGCAAGTTGGCAATCCAAGGTATAGCATGCATAGGGCTGGCAAAATTCAGGGTGACTGAAGCAAAAGCTTCATAACCAGAAAGACCACATCTGGGGGTAGAGCACAAAACTCTCAAGAGATGAATCTTTGTAAGAGTGAGGCAGA

ACTATATAGCAGTTTTAGGAGATCTGTTGGTGCCCAGCAAGAGCTCCAAACGGGCTATATGCAGGGATGCAGGCTGTAGTCTCAGGAGAGGAGGTTCACAAAAGTCATTCAGTCCAAGACCTCAAACTGTGttctctactaaaaggaatcaaggttccctagagaaatggctgactccatgtatggtgcagtatattgatcctggaacatc-tgttttgccagaaagcaaggaagccatcaaagtccaacaggatcacttcaaaaagacatgaaagtcaacttgaagagataattattaacctagatgagacaatctaagcatccaaaacaataaagactgcaatggcctgaaatacatcaaatgcaaacaataatctatgagttcataatggtattcagaaaaaaaaactactggtcattagagggaaggttactaggtcactaacttactactctgaaaagtgACTTAAGATGAGAGGTAGGGTGGAAAATTAGCTATTTATTCAGTCTTTCCTGTACAAACATAAATTTTTAGGGAGATtgaagcagatgaaacaaatctggaaaaatggaggtaactgcttaatctgcgggttgggtgcatggaggttcaacatatttcttttgtgtatatttgaaCCCCCTACAAAAAAAGCACAAGAGAGAATGTGAGCCAAGCAGCTTAGGGTTTAGGCAAGGCTTCTGCCTACAAGAGACACTAGGATATGAGGGGTAGTTTTAGCCCTAATGGGCTGAGCCAACTGGAGGTATATAGGGAAGTGCTAAATTGCAGAGGTATCATGTTGCCCAGCACTTGATCAAATCCTAGATCCTAGGTCTGCTTGGTAGCATGCTTCCTAGGTAGTGGATCTGAGGCTACCTATAGAACTTCCTTTGCAGTCATAGTTCGCTCAGAAACTACAAAAGTGCTTGCTCTTGAAAATGGAgtctttgtccatttcatgcttctataaaagaataccacaga

ctgcataatttataaaaaggaaaaaaggaaggaaagaaaaaaggaagggaggagggaaggagggaaaaagggaaggagggaaggaaaggaaggaagggaaagaaggaaaggaaggaagggaaagagagaaagagggaaggaggaagggagggaaggagggagggagggagagagagagggagggaggggaagggaagaaaagggaagagaagggaaaggaggaagaaaaggaaaggAaaggaataaattttatttcttaacagttctggatgttaggaagtccaaggttgaggggcctgcatctggtaaaggtcttcttgctgcatcatcccactacagaaggcagaaggaaaagagagtgcaagaaagcaagagggcaaaaggggctgaactctgttttataataagcccactctgtgattactaatctattaccacaataacaacattaactcattcatgaaggctattttattaggccccacatcccaactgttgcattgaggattgagtttccagcacataaactttgggggacacatttaaaccatagcaGAGCACTTAGGTTAATTCAACTAAGAGGAGCTGGGAAAATCAAAGGCATGAGAAAGACAGCAAAAGCTAGCAGAGAGAAATGCATAGGTTAAGGAAAAAAGTCACAGTGAATCCTGTAGTGCAGGCTACTTTATGAAAAGCACCTAAAAAAGATCTCATTAACTCCCCCAGCTCACCTCCACGCACATCTAAAGAGCCACACACAGCACCACCAAAGGCAGCACAATGAGAACAGCATTCTCCTCAACAGACAAGCTGGGAGTATCTAGACACCCGACCTCAATAGCTCCAGAACAGCCCTAAAACATTTCCTCCCTAACCACCACTCAAGTCACCAGCTTGGAAAGTATTAAGAAAACCCAAATCCTGACACACCACTATGAAACAACTTAAAACAGCAAAGAACAACCCATTTAAACAGCAATGCCAGCTGT

TGGGAAAAAAAGGAACAATGAGTAGAGGAGAAACAGACCTCTCGGGGTCCACCAAGACCCAGTCTCTCAGCTTCAGCACTTTTAAATGCAGAATCCATACCCCTCTGGGGCCTGTGGAGCTCCACAAGGCATGTCGTCCTCAAAGATAAATGAGCAGGCAAGCTGGCTAGAAAACCACTAAGGGTATTTATTCTTTAAAGAATCTTTACAGGGTCAAAGAAGAATGGGTCTTAACTGGCTATGTGAACTCCCCACAGATTCTGAGGATGATGTCAGTATCCCTTTCCAGATGTGTTTAACACTTTGCAGTCACTTGTATTCCTGCTACTGAGTGCCAGTGCTTTGCTAATTTGAACTGATTCCAGCTCACGCTGACCCCAGCTCCCTGGATGTTACCATTAGCCAAGACTGTCACCCATACTGTACCCTTTCAAAGAGTCCTAAAAACAGCTCTTCACCTACTCTTCCAAGACAAGTAAAAATGTCTGCCAAAGAAATGGGGAAAAAAGATTCAGAGAGTGAAAACAATTAATATACTAACAAGAGAGCAAAAAGCAAAGGGGGAGGAGAAACTAGGAAAATCATATATGGGCTCTCACCTATTTCCAAAGCTGGGCTAATGTCCTTTTGCTTGTGTCTGAATAAGGCACCAATTTTAAGCTGATAATGAAAAAAAAAGAAAAAGAGAAAGAAGCAGGCCCAggctgggcgcagtggctcatgcctgtaatcccagcactttgggaggccgaggcgggtggatcacccaaggtcaggagttctagaccagcctggtcaacatggtgaaacaccatctctactaaaaatacaaaaaattagccaggcatggtggcgcatgcctgtaaatccagctactaaggaggctgaggcaggagaattgcttgaacctggaaggcagagaatgtggtgacctgagatcacgtcattgccctcaagccacggcaatgagaacaaaattcggtAaaaac

aaaacaaaacaaaacaaaaTCACCATAAAATAACTCAGACTTAATTAAATACAACCCTAGTGGTGAATGACTAAAGATGGATTACTCATAACAGAGACAACAGTCCAATAAGAATCCAGGAATCTTACCTTTTAATAAC-AAAAAAATCCTTTCCTTCTAAAGTAACATCCTCTCAAGGCCAGGAATTCCATTAGTAGAAAGCCTTCCTAAAAAACAAAATTCCTggccaggcatgggttcacgtctgtaatctcagcactctgggaggccgaggcgggaagatcacttgatatcaggagtcgaggcgggaagatcacttgacgtcaggagttcgagactggcccggccaacatggtgaaaccgcatctccactaaaaatacaaaaattagcctggtatggtggtgggcacctgtaatcccagtgacttgggaggctaaggcaggagaatttcttgaacccaggaggcagaggttgcagtgaccagcaaggttgcgccattgcaccccagcctgggcgataagagtgaaaactccatctcaaaaaaaaaaaaaaaaaaaaaaTTCCTTTGGGAAGGCCTTCTACATAAAAATCTTCAACATGAGACTGGAAAAAAGGGTATGGGATCATCACCGGACCTTTGGCTTTTACAGCTCGAGCTATAAGAAAAAAAAGAAAAAGGGATATCATTTAAACACAGTATGTAGAAAAGAATAATTATTGAATCTGTACTGGTCTTTAACTTTTACACTTTGATCTTTAATTCTGTTATTGTGATTGAGTCCAAAGAAAAACAGTATGAGTAAAATAAAAAGAACACCAAAAATGCTAATATTCTGTTTACCGAAGTCTGTAGTGAAATATCCCATTAAATccaagtgcagtgacacacccataatcccaagcactttgggaggctgaggcgggtgaatctcctgaagtcaggagttcaaggccagcctggccaacatggtgaaaccccaactctac

tacaaatacaaaaattaggcaggcgtggtggcagaggcctgtaatcccagctacttaggaggctgaggcagggagaattgcttgaacacaggaggtgagcttgccatgagctgagatcataccactgcactccagcgtgcgtgacagaacaaaacttcaacctcc-aaaaaaaaaaaaaaaaaaaaaaaCAGCTAGCAGGTGACATTTGCTATAGGGAGACTAGGGATATGATCTTGCTGCAATCTTTCCATTTTAGTAAATCTAAACAAGTGTGAATCCATTCTGTTTCGTCCCCACTCCACTCCAGAGCCAAAACAAGAAAAACAATTATATTTCTAGTTCTTTAAAAACATATCTAACTAAATCATCTAATTAAAAGATAATATGCATGGTTCCATACTCTAAAAGAAAACTTATGTCCTGCATATCATGGACATTTGATGAATGCTTATTCAGTTGACTGGTGTAGACTTCAATAATAACCTGTTCAATGCATTATGCCAGATGAATCTTGCATCTCAAAAGTAGAACAAATATTGTTCTTTCAGTTTTGTCTACCCATAAATGCAATATTTACTAATAAAAAGAAAATGAGTTTATTGTTCTAGAGAGTATGAGAATTTTGACAACATGAATTCTCCTGTCCTAGGACATAATTAATACTTAGAGGCATACTATTTCATGTGGAAGCTACCATTAAATCAATGTTAAGTGTTAATTACCTCACATAATCTTCTAATCTGACTT--GACTGAAGACGTACCTGACAAAGTTGATTTATCAAGTTGTAAATCTTCACCTGTTGAATTCATAAGTTCATGTCTGAAAGGTGAGAATAAATACTTAATATTCATTAGGCAATATTCAGCAAAGTAATATCCACTAGTACATATTTAATATTTCATCATGAACTGCGGGTGTGAAGAGAAAGGACAggctgggcacagtggctcacacctgtaatcccagcagtttgggaggccgaggc

aggcagatcatgaggtcaggagttcgagaccagcctggccaacatggtaaaaccccgtctgtactaaaagtacaataattagctgggcatggtggcaggcacctgtaatcccagctactcgggaggctgaggcaggagaattgcctgaacccaggaggtggaggttgcagaaaccattatcacgccactgcattccagcctgggcaagagagcaagattctgtctcCATCAATCAATCAATAAAAATATAAGAAGGAAGcatttactgtgtatttatatgtctggtattatgtgaagcactttactatcttatcaaatcttcgggacagatcttcagttctcatgaccacaaaagaggatactaaagctcagacaggagaagagacgtggccaGCCTGTGTCCCCAGGGCCTATGGTCTTACCACTAGGTTACAGTGTTTCCAGATATCACATGTTGTGAGATTTTTGCTTTAAAATGAACCAAAAAAAAACCAAAGGTGAAAAAGGCATAAGCTATTAAAAAGTGGGAGAAACACTAAGAGAACCTTAAGCATGTAACTAAAAATATTATGGAAATGTTATTGAATACATTAGCAAATTTAGTGCTAGGTTTTCATTGAGGAGTAGGTTATATTACTCATGATGAAGAAAAATGTTCATTTTAAGTATATTAACATAAATACCATCAATATTGTTTATCATGTTTAAATGTTCACTTAAAGCAATTCAGTTAAAATTCTGCATATCATACAATTTTATAGTTTGCTAGTAGGTTACAAGTAAATAGTCACCCAAATAAAAACATCATGTTTTCCACTGGTTGTTGCTCTTTTTTAGGTGAGTATTTGATATATACCAACAGAGAGAGGATAATAACAAATCGCTAATTTCTTTCATCACTATATAAAGGTGGCTTCAGGATAGAATAGTATCAGTGTAATGATGAATTTGAAATCTAACATCAATTCAGTGATGCATCAAGATAAAAG

TAGAGACAACAGGGGCACCTTGGTGAGTACTGAACAttttatttatttatttattttgagatggagttttgctctttttgcccaggctacagtgcaatggtgccaacctcgcctcactgcaacctctgcctcctgggttcaagcgattctcctgccttggcctcccgaatagctgggattacagacatgcgccaccacacccgtctaattttgtatttttagtagagacggggtttctccatgttggtcaggctggtctcgaactcccgacctagatatctgcctgccttggcctcccaaagtgctgggattacaggtgtgagccaccacgcccagATGAATTCCAAATTTAACAAAGCAGACTAAGAGAAACAATTCATTTAAAAAAATAATATTTggccaggcatggtggctcacacctataatcccagcactttgggaggctgaggtgagtggatcaggaggtcagcagttcaagaccagcctagccaagatcatgaaaccccgtctctactaaaaatacaaaaatcagccaggcgtggtggctggtgcctgtaatcctagctgctcgggaggctgaggcagagaactgcttgaacccgggaggcggaggttgcagtgagccgagatcgtgccactgcactccagcctgggcgacagagtgaggctccgtctcaaaaaaaataaataaaTAATTCAATGAAATTCCTAAGATCCAGGGCTTTGCAATAAATATGTAAATAAATTTCCAATCTCCATACTGAAAGTTTAAAAGAAATGCTAACTAATAACTAAAGAAATACAACTTTTCCTCAGCTTTGCAGCAATCTAGAAACAAAGTGTGTAGACACTACAAAGCACCTTACAAGGAGAAACATGTAAGGATGGCATGACTCGCCGGCAGCCCTGGGATTGTCCACGGTACCCCCATGATGAACAGTAACTCCACTGTGTAAACGCCCATGAACCTAAGATTACAAGACTTTTCC

AGTTTAGACATACCATATTTTCTTTCAGACAATTCTTCAGTTTGTTTACGTAGATCAGCGATACGATGATTCCATTTCTCTGAAAACCAAGCAAAAGTTGCTTCTCAATAACACGTCCCTATGTCAGAGCAGCACTAACATATAATGACTGATTTCATATATTTTACATTCTAACAGTCCATATCATTTTACTGCTTTCAAGAAAAAATTTCCCCTTCTTGGTGGTTCTTAGAATTGGTTTAATGGGAGACTATTAGAGAAGCTGAAAAGCAGGAGGGCAGAAAAGCTCAATCAAATTAAACACAATAACAGGGAGGTCACAATGAGGCGGTCTCCAGGGGTCTTTTAGCAAACTTCCTAAAACATGTCTCAGCTGTGTGAAATAAGACTTTACAGCagccgggtgcagtggtgcaggcctgtaatcccagcactttggcagcagaggcaggcggatcactttgagctcagggcaacatagccaaaacccccctccctagccccacccccaccccgtccctaccaaaaatacaaaacagcagggcatggtggcgggcgcctgtagtcccagctactcaggaggctgaggcaggagaatcacctgaacccaggaggcagacattgcagtgagccaagatcacgccactgccagcctggatgacagagcaagactccacctcaaaaaaaacaaaaacaaaaaCACAAGGTTAAGAGGGACCCCCGACCTTACAGATACAAGTTTAAGAGGGACCCCTAAGCAAAAAATGCCAACCCTTTTTCTCCCAATCATTGAAACACCAGGAGGGTGTAACAGTTTTGCAGCCTAGCtgtagcaggctgatgcccccaagatgcccatatcctaatcccgggaactagtgaacatgaccttat-atggcaaaaggaactttgcagatataatgaagttaagggtctttggcttt

+s panTro2.chr1_random 7209832 11753 +   9420409
TAATATGAGGTCTTTCATTTATCACACAGAAAATAACTTGTTAAATTacaatacctgtgtgggcgaaggtgcagtgaaatggccattttcttgtagtattagtggtgtttaaaatgtatataagccttccagcataaagctgggaaattttttttaagtcatacagacagtgactcattatactgcctcctccaactcctggcctcaagcaatcctcccacctcagcctcccaaagtgctggaattacaggctgacagccaccatgcctgaaagctttgcaatttacatcgagggtaataagaatgctcatgccctgtgactcacagtaatctcacttctggaaatttcacctttggatataattcaacctaaacaaaaggacatatgcacaaACACAGTGAAAATCTGGGAGTAATTTTTTTCTCTTTTTTAAAaaaaatatggaatgcttcacaaatttgcatgtcattctttcacagaggccgtgccaatctctctattgttccaacttaagtatgtgtgctactgaggcaagcaTGAGTAATTTAAGATAGAGTGGTTAAGTGAAATAAGGAAGAATTATGGAGAATTTAAAAATCTATGCTATTTATAggcacctagtaacagctcagtaaatattagctgctactattatTATTTTTATGGTAATTTCACTCAATTAAAAACTGTCATTAAAAATTACCATTGTCATGGAACGTAATGTCTCCTACTGTATAATTGTAAAAACAGATACAATttgtcccttggtatatggggggattagttccagctctcccatttctgtgtataccaaaatccacgcatactcaagttttcgaagtcagtcctgtggaatccacatataACACAAATGGGaaaattagtgaggtgtggtgacaagcacctgtagtcccagctacttgtgaggctgaggcaggag

gattgcttgagcccaggaggttgaggctgcagtgagccataattgcatcactgcactccagtctgggcaaaagagtgagacAGAAGGTTGACTTTTTAATAGAATTTTTCTGTTCACTTGAAGATATGGTCAGGATTGTGGCATATGAAAATTCTTCATAAAATAACTATCTAATCCAATTAATGCTGGAATTGGGAACAGCAGAAGTGTCATCTCAGAGCTACTCACAATGAAAGGTGATGTCTGGGGCTCAGGTGTGTTGAGATCCCCATGCCTGGACTATGGGTGCTGAGTGGGATTTACTTGTCCATCCATTTTCTATATTCCAGCACTGGGAAACTAGGGTTTATCCATCTTGGTAAGATGTCATTTAAATTCCACTTCGCAAGAACCACAAATGGAAGAAAGGCCATGAAACCGCAGGACAGTACTTGTTCTCAAGGGAATCTTCAGCTTAGGTGGCTCTGTAAAAGAGAAATTACATTGTTGAAAAATCGTCGCAggtcaggtgaggtggctcatacctataatcccagcccactgggagactaaggcaggaggattccgtgaggccaggagttcaagaccagcctgagcaacacagtgaaacctcatctctacaaaaaattagaaaatgaactgggtgcagtaaaacattcgtatagtcccagctactctggaggctgaaataggaggatcgcttgagcccaggaagtggaagctgcagtgagctctgatctcaccactgcactccagcctcggtgacagagtgagaccctgtctcaaGATacacacaaacacacacacaaacacacacacacacacacacacCCAATCTC----TGTCCAGCCTTGACTAATCAAAAGGGCCTTCTGGTTACAGAAGAGGTATGCTCTTTTG----------AGAGACCAGCAAGCTTGTTCACAGACTTTTCCTCATCCTCTGCTTAGTTTTCCAAGAACCCTCACCGCGGAAATGGAG

TCTCTGGGAAAATGACCTAAATCTTTGGGTTACCAGGGGAGAAATATGCCTCCTTTGTCAATTAATAAATGGAACATCTGCCTTAAAATCCAGGGAGTTCTGCTAGAATGAATCACTCCCTAAGACTCTGACCAATGCATGGAACATGAAAAACTGAAGTTTAActgggcgcggtggatcacgcctgtaatcccagcactttgggaggctgaggcgggtggatcacctgaggtcaaaagttctagatcagcctggccaacatggtgaaaccccgtctctactaaaaatacaaaaattagttaggcatggtggtggacacctgtaatccgagctactcgcgaggctgaggcaggaaaatcgcttgaacccggaaggcggaggttgcagtTACTTCTAGAAGAATTTCCATTAGCCCTTTGAAATCCTTCAACATTCATGAAGGCCAAAGAGTTTTCACCTAATTTAATCTGATGGGTATGTGACCAGAGTCTTTCTAGGGAATAGAGACTCCCAAACAGTTCAACTGGGAAGTGAGGAGAGAATTTATTACTCAAAATCAAAGGGAAATAAAAAGAGGCCAACATAGAATGTCATTATTCTTTCTTGGCGGGGAATGGATTCCAGAGTCATTCTGTGACCTTTACATGACCTCCTTATTAGCATCTAAAAGCTTCCAGTGTAGGATGCAGCCAGCTAGGTTCTCTTCTAATGTAATAAAATTTGCTTCGGCAAATCTTATGCAGAGCCATCTCCAGGCTCCAGTAACAATAGGCTATAAATTACTGGATCTCCCATTTGATACAATGAAGCATGAGCACGGTCCTGAATGACTCCTCTACATACTACTCTGGGTGGCTTGAAGTGAATTTGATACAAGAACTGGAGCGAGCACAAAGCAGAGCTAGATCTAGGATTAATGTGCTTGGACCCAGCTCCTCACTACTCACCTATGAGTCTAGTTCCAGAACCCAAGTAGAGGATGGGGAAAC

AAGGCTCCTGACTTTTTTTCCCTAATGTCTGCATCTCTTTCACATTTCTTATCTCCTTGCAAAGAAACTAAACAGGCTCAACTGAAATAACTAAATGATTAAACCCTATACAGAGAATCTCCAAAGACTGACAAAATATCATTCAAGACTGTTACACAGACAACCTTGAGGATGACTTGATGTACCAGTGATCTACAATATTTGGGATCATTCCAAATTCCCATCAAGGATCTGCCTATATCAACAAAGGAGCCAAGGACCAACCATTCAAATGGGCCCTGCTGCCAAGCCTTTTTTTTTTTTTTTTTTACAATGCCATCTCTTCATATTGTTCCATTTAACAAAACTGCAGCACTTCATCTATGCTTAAGTCCCTTGGCCAATGGTACAGAGTCAGAGTATGCTACTCCCTAGCAGGAAATCAACAGGATGACCTACTAAACACCATTCAGAAGATGCTAAGACCCATGAATTGCAACAGGAAAGAAAAGACAGAGAAATAGTCAGACAGGTACATGCTGTGCCAAAAATGCACTACAGCCCCCACCCAATTCTGCCTAATCCTAGCTGGGCTGACACCAACCTGATGAGACAGGCCTATAAGATCTCAAACTAAAACAGAAACTCCTGAACTGGGTTCTTTCGAGCCCAGGAAGCAGCAGTAACTCATTAAAGAACAGATAAGTTCTTAAGGTGAGGGAGAGTTTCAGATAAATGGAATGCTGGTAGAACACAGGGCCCAAAGGAGCAAAAGTTAACCTAAGCCCAGGTAGAACCTTGTTTACTAGAGTATTAGGCATGGGTTGGGGCAACTATTCTAACCAGAGAAACTGGCTTCAGTGAGGGCAAGTTGGCAATCCAAGGTATAGCATGCATAGGGCTGGCAAAATTCAGGGTGACTGAAGCAAAAGCTTCAGAACCAGAAAGACCACATCTGGGGGTAGAGCACAAAACTCTCAAGAGATGAATCTTTGTAAGAGTGAGGCAGA

ACTATATAGCAGTTTTAGGAGATCTGTTGGTGCCCAGCAAGAGCTCCAAATGGGCTATATGCAGGGATGCAGGCTGTAGTCTCAGGAGAGGAGGTTCACAAAAGTCATTCAGTCCAAGACCTCAAACTGTGttctctactaaaaggaatcaaggttccctagagaaatggctgactccatgtatggtgcagtatattgatcctggaacatctttttttgccagaaaggaaggaagccatcaaagtccaacaggatcacgtcaaaaagacatgaaagtcaacctgaagagataattattaacctagatgagacaatgtaagcatccaaaacaataaagactgcaatggcctgaaatacatcaaatgcaaacaataatctatgagttcataatggtactcagaaaaaaaaaatactggtcattagagggaaggttactaggtcactaatttactactctgaaaagtgACTTAAGATGAGAGGTACGGTGGAGAATTAGCTATTTATTCCATCTTTCCTGTACAAACATAAATTTTTAGGGAGATTGAAGCAGACAAAACAAATCTGGAAAAATGGAGGTAACTGCTTAATCTGCGGGTTGGGTGCATGGAGGGTCAACATATTTCTTTTGTGTATATTTGAACCCCCTACAAAAAAAGCACAAGACAGAATGTGAGCCAAGCAGCTTAGGGTTTAGGCAAGGCTTCTGCCTACAAGAGACACTAGGATATGAGGGGTAGTTTTAGCCCTAATGGGCTGAGCCAACTGGAGGTATATAGGGAAGTGCTAAATTGCACAGGTATCATGTTGCCCAGCACTTGATCAAATCCTAGATCCTAGGTCTGCTTGGTAGCATGCTTCCTAGGTAGTGGATCTGAGGCTACCTATAGAACTTCCTTTGCAGTCATAATTCGCTCAGAAACTACAAAAGTGCTTGCTCTTGAAAATGGAgtctttgtccatttcatgattctataaaagaataccacaga

ctgcataatttataaaaaggaaaaaaggaaggaaagaaaaaaggaaggaaggagggaaggagggaaaaagggaaggagggaaggaaaggaaggaagggaaagaaggaaaggaaggaagggaaagagagaaagagggaaggaggaagggagggaaggagggagggagggagagagagagggagggaggggaagggaagaaaagggaggagaagggaaaggaggaagaaaaggaaaggAaaggaataaattttatttcttaacagttctggatgttaggaagtccaaggttgaggggcctgcatctggtaagggtcttcttgctgcatcatcccactacagaaggcagaaggaaaagagagtgcaagaaagcaagagggcaaaaggggctgaactctgttttataataagcccactctgtgattactaatctattaccacaataacaacactaactcattcatgaaggctattttataaggccccacatcccaactgttgcattgaggattgagtttccagcacataaactttgggggacacatttaaaccatagcaGAGCACTTAGGTTAATTCAACTAAGAGGAGCTGGGAAAATCAAAGGCATGAGAAAGGCAGCAAAAGCTAGCAGAGAGAAATGCATAGGTTAAGGAAAAAAGTCACAGTGAATCCTGTAGTGCAGGCTACTTTATCAAAAGCACCTAAAAAAGATCTCATTAACTCCCCCAGCTCACCTCCACCCACATCTAAAGAGCCACACACAGCACCACCAAAGGCAGCACGATGAGAACAGCATTCTCCTCAACAGACAAGCTGGGAGTATCTAGACACCTGACCTCAATAGCTCCAGAACAGCCCTAAAACATTTCCTCCCTAACCATCACTCAAGTCACCAGCTTGGAAAGTATTAAGAAAACCCGAATCCTGACACACCACTATGAAACAACTTAAAACAGCAGAGAACAACCCATTTAAACAGCAATGCCAGCTGT

TGGGAAAAAAAGGAACAATGAGTAGAGGAGAAACAGACCTCTCGGGGTCCACCAAGACCCAGTCTCTCAGCTTCAGCACTTTTAAATGCAGAATCCATACCCCTCTGGGGCCTGTGGAGCTCCACAAGGCATGTTGTCGTCAAAGATAAATAAGCAGGCAAGCTGGCTAGAAAACCACTAAGGGTA-TTATTCTTTAAAGAATCTTTATAGGGTCAAAGAGGAATGGGTCTTAACTGGCTATGTGAACTCCCCACAGATTCTGAGGATGATGTCAGTATCCCTTTCCAGATGTGTTTAACACTTTGCAGTCACTTGTATTCCTGCCACTGAGTGCCAGTGCTTTGCTAATTTGAACTGATTCCAGCTCACGCTGACCCCAGCTCCCTGGATGTTACCATTAGCCAAGACTGTCACCCATACTGTACCCTTTCAAAGACTCCTAGAAACAGCTCTTCACCTACTCTTCCAAGACAAGTAAAAATGTCTGCCAAAGAAATGGGGAAAAAAGATTCAGAGAGTGAAAACAATTAATATACTAACAAGAGAGCAAAAAGCAAAGGGGGAGGAGAAACTAGGAAAATCATAGATGGGCTCTTACCTATTTCCAAAGCTGGGCTAATGTCCTTTTGCTTGTGTCTGAATAAGGCACCAATTTTAAGCTGCTAATG--AAAAAAAGAAAAAGAGAAAGAAGCAGGCCCAggctgggcgcagtggctcatgcctgtaatcccagcactttgggaggccgaggcgggtggatcacccaaggtcaggagttctagaccagcctggtcaacatggtgaaacaccatctctactaaaaatacaaaaaattagcgaggcatggtggcacatgcctgtaaatccagctactcaggaggctgaggcaggagaattgcttgaacctggaaggcagagaatgcggttacctgagatcatgccattgccctcaagccacggcaatgagaacaaaattcggtAaaaac

aaaacaaaacaaaacaaaacCACCATAAAATAACTCAGACTTAATTAAATACAACCCTAGTGGTGAATGACTAAAGATGGATTACTCATAACAGAGATAACAATCCAATAAGAATCCAGGCATCTTACCTTTTAATAACAAAAAAAATCCTTTCCTTCGAAAGTAACATCCTCTCAAGGCCAGGAATTCCATTAGTAGAAATCCTTCCTAAAAAACAAAATTCCTggccaggcatgggttcacgtctgtaatctcagcactctgggaggctgaggcgggaagatcacttgatgtcaggagtcgaggcgggaagatcacttgacgtcaggagttcgagactggcccggccaacatggtgaaaccccatctccactaaaaatacaaaaattagcctgctgtggtggtgggcacctgtaatcccagcaacttgggaggctaaggcaggagaatttcttgaacccaggaggcagaggttgcagtgaccagcaaggttgtgccattgcaccccagcctgggcgataagagtgaaaactccatctc--aaaaaaaaaaaaaaaaaaaaTTCCTTTGGGAAGGCCTTCTACATAAAAATCTTCAACATGAGACTGGAAAAAAGGGTATGGGATCATCACCAGACCTTTGGCTTTTACAGCTCGAGCTATAAGAACAAAAAGAAAAAGGGATATCATTTAAACACAGTATGTAGAAAAGAATAATTATTGAATCTGTACTGGTCTTTAACTTTTACACTTTGATCTTTAATTCTGTTATTGTGATTGAGTCCAAAGAAAAATAGTATGAGTAAAATAAAAAGAACACCAAAAATGCTAATATTCTGTTTACCAAAGTCTGTAGTGAAATATCCCATTAAATccaagtgcagtgacacacccataatcccaagcactttgggaggctgaggcgggtgaatctcctgaagtcaggagttcaaggccagcctggccaacatggtgaaaccccaactctac

tacaaatacaaaaattaggcaggcgtggtggcagaggcctgtaatcccagctacttaggaggctgaggcagggagaattgcttgaacccaggaggtgagcttgccatgagctgagatcataccactgcactccagcgtgggtgacagaacaaaacttcaacctccaaaaaaaaaaaaaaaaaaaaaaaaCAGCTAGCAGGTGACATTTGCTATGGGGAGACTAGGGATATGATCTTGCTGCAATCCTTCCATTTTAGTAAATCTAAAC-AGTGTGAATCCATTCTGTTTCGTCCCCACTCCACTCCAGAGCCAAAACAAGAAAATCAATTATATTTCTAGTTCTTTAAAAACATATCTAACTAAATCATCTAATTAAAAGATAATATGCATGGTTCCATACTCTAAAAGAAAACTTATGTCCTGCATATCATGGACATTTGATGAATGCTTATTCAGTTGACTGGTGTAGACTTCAATAATAACCTGTTCAATGCATTATGCCAGATGAATCTTGCATCTCAAAAGTAGAACAAATATTGTTCTTTCAGTTTTGTCTACCCATAAATGCAATATTTACTAATAAAAAGAAAATGAGTTTATTGCTCTAGAGAGTATGAGAATTTTGACAACATCAATTCTCCTGTCCTAGGACATAATTAATACTTAGAGGCATACTATTTCATGTGGAAGCTACCATTAAATCAATGTTAAGTGTTAATTACCTCACATAATCTTCTAATCTGACTTAAGACTGAAGACGTACCTCACAAAGTTGATTTATCAAGTTGTAAATCTTCACCTGTTGAATTCATAAGTTCATGTCTGAAAGGTGAGAATAAATACTTAATATTCACTAGGCAATATTCAGCAAAGTAATATCCACTAGTACATATTTAATATTTCATCATGAACTGTGGGTGTGAAGAGAAAAGACAggctgggcgcagtggctcacacctgtaatcccagcagttggggaggccgaggc

aggcagatcatgaggtcaggagttcgagaccagcctggccaacatggtaaaaccacgtctgtactaaaagtacaataattagctgggcatggtggcaggcacctgtaatcccagctactcgggaggctgaggcaggagaattgcctgaacccaggaggtggaggttgcagaaaccattatcacgccactgcattccagcctgggcaagagagcaagattctgtctcaaTCAATCAATCAATAAAAATATAAGGAGGAAGcatttactgtgtatttatatgtctggtattatgtgaagcactttactatcttatcaaatcttcgggacagatcttcagttctcatgaccacaaaagaggatactaaagctcagacaggagaagagacgtggccaGCCTGTGTCCCCAGGGCCTATGGTCTTACCACTAGGTTACAGTGTTTCCAGATATCACATGTTGTGAGATTTTTGCTTTAAAATGAACCAAAAAAAAACCAAAGGTGAAAAAGGCATAAGCTATTAAAAAGTGGGAGAAACACTAAGAGAACCTTAAGCATGTAACTAAAAATATTATGGAAATGTTATTGAATTCATTAGCAAATTTAGTGCTAGGTTTTCATTGAGGAGTAGGTTATATTACTCATGATGAAGAAAAATGTTCATTTTAAGTATATTAACATAAATACCATCAATATTGTTTATCATGTTTAAATGTTCACTTAAAGCAATTCAGTTAAAATTCTGCATATCATACAATTTTATAGTTTGCTAGTAGGTTACAAGTAAATAGTCACCCAAATAAAAACATCA-GTTTTCCACTGGTTGTTGCTCTTTTTTAGGTGAGTATTTGATGTATACCAACAGAGAGAGGATAATAACAAATCGCTAATTTCTTTCATCACTATATAAAGGTGGCTTCAGGATAGAATAGTATCAGGGCAATGATGAATTTGAAATCTAACATCAATTCAGTGATGCATCAAGATAAAAG

TAGAGACAACAGGGGCACCTTGGTGAGTACTGAACAttttatttatttatttattttgagatggagttttgctctttttgcccaggctagagtgcaatggtg-caacctcggctcaccgcaacctctgcctcctgggttcaagcgattctcctgccttggcctcccgaatagctgggattacagacatgtgccaccacacccgtctaattttgtatttttagtagagacggggtttctccatgttggtcaggctggtctcgaactcccgacctagatatctgcctgccttggcctcccaaagtgctgggattacaggtgtgagccaccgcgcccagATGAATTCCAAATTTAACAAAGCAGACTAAGAGAAACAATTCATTTAAAAAAATAATATTTggccaggcatggcggctcacacctgtaatcccagcactttgggaggctgaggtgagtggatcaggaggtcagcagttcaagaccagcctagccaagatcatgaaaccccatctctactaaaaatacaaaaatcagccaggcgtggtggctggtgcctgtaatcctagctgctcgggaggctgaggcagagaactgcttgaacccgggaggcggaggttgcagtgagccgagatcgtgccactgcactccagcctgggcgacagagtgaggctccatctcaaaaaaaataaataaaTAATTCAATGAAATCCCTAAGATCCAGGGCTTTCCAATAAATATGTAAATAAATTTCCAATCTCCATACTGAAAGTTTAAAAGAAATGCTAACTAATAACTAAAGAAATACAACTTTTCCTCAGCTTTGCAGCAATCTAGAAACAAAGTGTGTAGACACTACAAAGCACCTTACAAGGAGAAACATGTAAGGATGGCATGACTCGCCGGCAGCCCTGGGCTTGTCCACGGTACCCCCATGATGAACAGTAACTCCATTGTGTAAACGCCCATGAACATAAGATTACAGGATTTTTCC

AGTTTAGACATACCATATTTTCTTTCAGACAATTCTTCAGTTTGTTTACGTAGATCAGCGATACGATGATTCCATTTCTCTGAAAATCAAGCAAAAGTTGCTTCTCAATAACACGTCCCTATGTCAGAGCAGCACTAACGTATAATGACTGATTTCATATATTTTACATTCTAACAGTCCATATCATTTTACTGCTTTCAAGAAAAAATTTCCCCTTTTTGGTGGTTCTTAGAATTGGTTTAATGGGAGACTATTAGAGAAGCTGAAAAGCAGGAGGGCAGAAAAGTTCAATCAAATTAAACACAATAACAGGGAGGTCACAATGAGGCGGTCTCCAGGGGTCTTTTAGCAAACTTCCTAAAACATGTCTCAGCTGTGTGAAATAAGACTTTACAGCagccgggtgcagtggtgcaggcctgtaatcccagcactttggcagcagaggcaggtggatcgctttgagctcagggcaacatagccaaaacccccctccctagccccaaccccaccccgtccctaccaaaaatacaaaacagcagggcatggtggcgggcgcctgtagtcccagcttctcaggaggctgaggcaggagaatcacccgaacccaggaggcagacattgcagtgagccaagatcacgccactgccagcctggatgacagagcaagactccacctcaaaaaaaacaaaaacaaaaaCACAAGGTTAAGAGGGACCCCCGACCTTACAGATACAAGTTTAAGAGGGACCCCTAAGCAAAAAATGCCAACCCTTTTCCTCCCAATCATTGAAACACCAGGAGGGTGTAACAGTTTTGCAGCCTAGCtgtagcaggctgatgcccccaagatgcccaaagcctaatcccgggaactggtgaacat-accttctnaatgagggagggnctttgcagatataatgaagttaagggtcttTGGCTTT

+
+a score=376695
+s hg18.chr1       158893 4074 + 247249719
tggggttgatgtactcactcggatccttgtaagagcagagcaggtgatgg-agagggtgggaggtgtagtgacagaagcaggaaactccagtcattcgagacgggcagcacaagctgcggagtgcaggccacctctacggccaggaaacggattctcccgcagagcctcggaagctaccgaccctgctcccaccttgactcagtaggacttactgtagaattctggccttcagacctgtaagggaatacattttggttgttttaagtcactaagtgtgtggtaatttgttgcagcagccacaggaaactagtaTTGTAGTGAAGCCTCAAAACCCCCCTGAAGGggctgggctcagtggctcatgcctgtaatcccagcactttgggaggccgagatgggtggatcacttgaggtcaggagttcgagaccagcccagccaacatggtgaaatgccatctatacaaaaaatacaaaaactagccgggcatggtggcacatgcctgtaatctcagctactcaggaggctgagacaggagaattgtttgaacccaggggggcagaggttgcagtgaactgagattccaccactgcactccagcctgggtgacagagcgacgctccatctcgaaaacaaaacaaaacaaaaaaaCCCCACCTGAAGGTTTCCAGTTCTGCCAGCACTCTCCCACCCAACCCCCAGAAACAGACATTCCATTGCTGTGGGCCACGGACAGGCAGAAGGAAGCACCTCCTCATGGCAGAGGCCTACCCAGGAGAAACCCAAGGGAAGGCACTACTGGGCTGGCCCCTCTCTGCCAAGGCCATAttcttttttttttttt-----gaggccagtttcactctgtctcccagactggagtgcaggggcacaatctcggctcacttcgacctctgcctccccagttcaagtgattctcctgcctca

gtctcctgagtagctgggatgacaggagtgtagcatgcctagctaatttttgtatttctagtagagatgcggttttgccatgttgcccaggctggactcgaactccttgcctcaagtagtccacctgtctcagccccgcaaagtgctgctattataggagtgagccactgcacccagcATTTGCCAAGACCTTTGATGGCAGGCTTTTTCCAGGTGATCAGTCCTTGTCTGGTCTGGCTCTGCCCCACTCTCCTTCTCACCTAGTTGGAATCCCTAGCTACTTTTCAGTAGAGGAGAGTGTGTACCCCAATCCCAGCTTGGTTCAGATCTGCATTTAACTCATGGAACCTGGCTGCTCCCCAGGTTCTGAAGAAAAAAACGGTCTCTCTGTGGGTATGATAAAGGATGGGCCTGTCCCCAGGACCCTGTGAGAGGGAAGCCCAATGTCCCACCAGGTTGGCAGGGCTGGGGAAGGGAAAGTGTTATGGCAGCCCCAAGAAAAAAAAGAGGCAGCAGAGGGAGCAGGAGAGCGCTCACATGGAACTCATGCCACTGCCTGAG----GGGAGGGAGGAGTGCACGCCAGTGACGTCAGGGGGCAGAGAGGCGCAGTTCCAGGGCGGCTTTCCCCCTCACTTCCTGCCATGTTACTCTGATCGCCTCCACGTGAGCCTGCCCACTTTGTGCCCAGGGGCCTGTAGAAAACCACAGCTCCCCATGGTTATGGCCCCAGGAGTGGGGCAGAGCAGGGAGGAGTCCTGCACAGAGGAGAGGCAGGGGCAGGAGGGAGTGGGCCTCAAACTCCAGGAGGGGGCCCTTCTCATGGGTCCTGCTTTCTGGCTTCTCCTTCCTTACCCCTGGGCTGATCACTTGGGGAAGAACTGAGACAAAGTTTCTCACCCTCAGGCCCAAAGGGTTTAATTACTGGGCCCTTAGGGAGGTGTGAGCCCCCTGAAAGGATGCAAGgttttgttttgttttgtttttt

gagacagagtttcgctcctgtcgcccaggctggagtgcagtggcgtgatctcaccacactacaacctgcgcctcccaggttcaagtgattctcctgcctcagcctctggagtagctgggattacaggtggctgccaccacgcctggctaattttttgtatttttagtagagacagggtttcgccatgttgggcaggctggtcttgaactcctgacctcaggtgatccgactggctccgcctcccaaagttctgggatcacatcagccactgtgcttggccACGATGAAAGGTTTTGTGTGGAGAGCATGTACATGCCTTTCTGGGAAAACAGTCCACAGCTCTTATTCTCAGCAGGCTTCACGGTGAAAAAAGGTTAGAACTCTTGCTACAGAGCTGTGGAAGCAGCCAGGTGAGGGGCCTGCCAAGGGCACTCTGGGCACTACCTGGGCACTCTCGAGCCCATCATCCCCTAGGCAGGCTGCACTGCTTGGTATTTGCAGAGCTGAGGGGGTGGGGCATGTGGGGACTGTGAAATCGCCCTGAGATGACCCACAGTCCTCAGCTAGGAAGTAAGCGCTGCATCTCCTGCAGCGTCCTCCATCCCTAGAGCCATGGGGCCAGGAGAACCGGCCCTTGCAGCAAGTGAAAAGCCTATTATTGATTCCCTCCCTAGCCATGTAGACAGTGAACCAAGACACTCATATCAGGTAAATGCCTTGTTCTCTGTTACCAAGGTAACCAGTAGGCATTCCCAGATACAGCGAAGGTCCTCACACCAAGATATGCACCTGGCCACCTGAGGAAAGAGAAAGGACTATCTGAGGGGACGGGGCTGAGCTGGGTGTGGAGTGGTCCTTGTGGGTCTTGGAGAGTGGGAGGGGGAACAGCATGAGCCAGGCCTCGAGGCAGAAGGACAACCAGGAGACAGCCTGGAAAAAGTGCTGGACCCACAAGGGCTCAAGGCTGGCCAGAGGGGAGGTGGGATAGG

CTGTAAAGTCCTGAGGTCTGAAGATTGGCCCTGGCAGGAAGAAACCAGGTAAGGTGGGGTGTTACCTACACCCTCGGGGCCAGATGCAGGCCAGAGCCAGCCAATTACCAGGCCCTTAGGGAGGTGTGAGCCCCTTGAAATGATGCAAGGttttttgtttttgttttggagacggagtttcgctcttgtcacacaggctggCACCTTTGCCCAGAGCAGGCACCAAGACTTCTGGCTCTGGGTGTGACCTCAGTCTGGGTAAAAGCCCCAGCCCCCACCAGCACCACCTACCCCCTAGACTACTTCAGGTGCTGAGCCCAAGCCAGGGGCAGGAAGCTAAACTGATGCCTAGGGTAATCCCAACAAAGTCCCTGGTTCCCCGCAGCTATGGGGCTGACGGGGAATTACAGCCCAAACCCCAGATGCTGGCTCTCAAACTAACACTGAGCCCTCAGtgcccacagggagatacaatcagcgcactttccagatggggaaatgggatcagagaagtgcaacagccttgcccaatgccccagaccagGGCTCCAGGCCCAGAGTGTTCTTTTGTCACTGTGTTCAGAGGGCAGCAGCTGCTGTGATGTACCCACCTGAGCCTGGCAGCTCTCTCCAACTTTGGAAGCCCAGGGGCATGGCCCCTGTCCACAGATGCACCTGGCATGAGGCGTGCCCAGAGGGACAGAGGCAGATGAGTTTCGTCTCCTCCACTGGATTGTGAGGGCCTAGAAGGAGACAAGGGTCTGCTTGAGAAGGCAGTGAACAGCGAGCAGCCTGAGGCAGTGCCCCTCTGGATGGATGCGCAGTGCCTGGATGGAACCTGGCTCAGACAGAGCTCAGTTCTGCAGGTCCCTGAGGCATGGAGAGTTcacagctaccaagtgtaggagtctggattcaaagccaacggcgtgactccaaagtccctgccctagcccctggaccaccctTGCAGGCCCATCAGATGCCCA

GGCCAGCAGCACAGCCGGCCAAGACCAGGGAAACTTGGGGAGCCTCAGAGCACCCCCAGGTATTCCAACCTAACCCTGGTGCCCCGCCTCTCACCACCCTTCTTCCTGCTTTAACCTCAACCCCTACACAAAGCCTGGGCCACTTAATGTGGCATCAAACAGACGCCTCA

+s panTro2.chr1 224073421 4083 + 229974691
tggggttgatgtactcactcggatccttgtaagagcagagcaggtgatgggagagggtgggaggtgtagtgacagaagcaggaaactccagtaattcgagacgggcagcacaagctgaggagtgcaggccacctctacggccaggaaacggattctcccgcagagcctcggaagccaccgaccctgctcccaccttgactcagtaggacttactgtagaattctggccttcagacctgtaagggaatacattttcgttgttttaagtcactaagtgtgtggtaatttgttgcagcagccacaggaaactagtaTTGTAGTGAAGCCTCAAAACCCCCCTGAAGGggctgggctcagtggctcatgcctgtaatcccagcactttgggaggccgaggtgggtggatcacttgaggtcaggagctcgagaccagcccagccaacatggtgaaatgccatctatacaaaaaata-aaaaactagccaggcatggtggcacatgcctgtaatctcagctactcaggaggctgagacaggagaattgtttgaacccagtggggcggaggttgcagtgaactgagattccaccactgcactccagcctgggtgacagagagacgctccatctcgaaaacaaaacaaaacaaaaaaaCCCCACCTGAAGGTTTCCAGTTCTGCCAGCAGTCTCCCACCCAACCCCCAGAAGCAGACATTACATTGCTGTGGGCCATGGACAGGCAGAAGGAAGCACCTCCTCATGGCGGAGGCCTACCCAGGAGAAACCCAAGGGAAGGCACTGCTGGGCTGGCCCCTCTCTGCCAAGGCCATAttcttttttttttttttttttgaggccagtttcactctgtctcccagactggagtgcaggggcacaatctcagctcacttcgacctctgcctccccagttcaagtgattctcctgcctca

gtctcctgagtagctgggattacaggagtgtagcatgcctagctaatttttgtatttctagtagagatggggttttgccatgttgcccaagctggactcgaactccttgcctcaagtagtccacctgtctcagccccgcaaagtgctgggattacaggagtgagccactgcacccagcATTTGCCAAGACCTTTGATGGCAGGCTTTTTCCAGGTGATCAGTCCTTGTCTGGTCTGGCTCTGCCCCACTCTCCTTCTCACCTAGTTGGAATCCCTAGCTACTTTTCAGTAGAGGAGAGTGTGTACCCCAATCCCAGCTTGGTTCAGATCTGCATTTAACTCATGGAACCTGGCTTCTCCCCAGGTCCTGAAGAAAAAAAGGGTATCTCTGTGGGTATGATAAAGGATGGGCCTGTCCCCAGGACCCTGTGAGAGGGAAGCCCAATGTCCCACCAGGTTGGCAGGGCTGGGGAAGGGAAAGTGTTATGGCAGTCCCACGAAAAAAAAGAGGCAGCAGAGGGAGCAGGACAGCGCTCACATGGAACTCATGCCACTGCCTGAGTGAGGGGAGGGAGGAGAGCACGCCAGTGACGTCAGGGGGCAGAGAGGCGCAGTTCCAGGGCGGCTTTCCCCCTCACTTCCTGCCATGTTACTCTGATCGCCTCCAGGTAAGCCTGCCCACTTTGTGCCCAGGGGCCTGTAGAAAACCACAGCTCCCCATGGTTATGGCCCCAGGAGTGGGGCAGGGCAGGGAGGAGTCCTGGACAGAGGAGAGGCAGGGGCAGGAGGGAGTGGGCCTCAAACTCCAGGAGGGGGCCCTTCTCATGGGTCCTGCTTTCTGGCTTCTCCTTCCTTACCCCTCGGCTGATCACTCGGGGAAGAACTGAGACAAAGTTTCTCACCGTCAGGCCCAAAGGGTTTAATTACTGGGCCCTTAGGGAGGTGTGAGCCCCCTGAAAGGATGCAAGgttttgttttgttttgtttttt

gagacagagtttcgctcctgtcgcccaggctggagtgcagtggcgtgatctcaccacactacaacctgtgcctcccaggttcaagtgattctcctgcctcagcctccggagtagctgggattacaggtggctgccaccacgcctggctaattttttgtatttttagtagagacagggtttcgccatgttgggcaggctggtcttgaactcctgacctcaggtgatccgactggctccgcctcccaaagttctaggattacatgaggcactgtgcttggccACGATGAAAGGTTTTGAGTGGAGAGCATGTACATGCCTTTCTGGGAAAACAGTCCACAGCTCTTATTCTCAGCAGGCTTCACGGTCAAAAAAGGTTATAACTCTTGCTACAGAGCTGTGGAAGCAGCCAGGTGAGGGGCCTGCCAAGGGCACTCTGGGCACTACCTGGGCACTCTCAAGCCCATCATCCCCTAGGCAGGCTGCACTGCTTGGTATTTGCAGAGCTGAGGGGGTGGGGCATGTGGGGACTGTGAAATCGCCCTGAGATGACCCACAGTCCTCAGCTGGGAAGTGAGCGGTGCATCTCCTGCAGCGTCCTCCATCCCTAGAGCCATGGGGCCAGGAGAACTGGCCCTTGCAGCAAGTGAAAAGCCTATTATTGACTCCCTCCCTAGCCATGTAGACAGTGAACCAAGACACTCATATCAGGTAAATGCCTTGTTCTCTGTTACCGAGGTAACCAGTAGGCATTCCCAGATACAGTGAAGGTCCTCACACCAAGATATGCACCTGGCCACCTGAGGAAAGAGAAAGGACTATCTGAGGGGATGGGGCTGAGCTGGGTGTGGAGTGGTCCTTGTGGGTCTTGGAGAGTGGGAGGGGGAGCAGCATGAGCCAGGCCTCGAGGCAGAAGGACAACCAGGAGACAGCCTGGAAAAAGTGCTGGACCCACAAGGGCTCAAGGCTGGCCAGAGGGGAGGTGGGATAGG

CTGCAAAGTCCTGAGGTCTGAAGATTGGCCCTGGCAGGAAGAAACCAGGTAAGGTGGGGTGTTACCTACACCCTCGGGGCCAGATGCAGGCCAGAGCCAGCCAATTACCAGGCCCTTAGGGAGGTGTGAGCCCCTTGAAATGACTCAAGGttttttgtttttgttttggagacggagtttcgctcttgtcgcacaggctggaACCTTTGCCCAGAGCAGGCACCAAGACTTCTGGCTCTGGGTGTGACCTCAGTCTGGGTAAAAGCCCCAGCCCCCACCAGGACCACCTACCCCTTAGACTACTTCAGGTGCTGAGCCCAAGCCAGGGGCAGGAAGCTAAACTGATGCCTAGGGTAATCCCAACAAAGTCCCTGGTTCCCCGCAGCTATGGGGCTGACGGGGAATTACAGCCCAAACCCCAGATGCTGGCTCTCAAACTAACAGTGAGCCCTCAGtgcccacagggagatacaatcagcgcactttccagatggggaaatgggatcagagaagtacaacagccttgcccaatgccccagaccagGGCTCCAGGCCCAGAGTGTTCTTTTGTCACTGTGTTCAGAGGGCAGCAGCTGTTGTGATGTACCCACCTGAGCCTGGCAGCTTTCTCCAACTTTGGAAGCCCAGGAGCATGGCCCCTGTCCACAGATGCACCTGGCATGAGGCGTGCCCAGAGGGACAGAGGCAGATGAGTTTCGTCTCCTCCACTGGATTGTGAGGGCCTAGAAGGAGACGAGGGTCTGCTTGGGAAGGCAGTGAATAGCGAGCAGCCTGAGGCAGTGCCCCTCTGGATGGATGCGCAGTGCCTGGATGGAACCTGGCTCAGACAGAGCTCAGTTCTGCAGGTCCCTGAGGCATGGAGAGTTcacagctaccaagcgtaggagtctggattcaaagccaacggcgtgactccaaagtccctgccctagcccctggaccaccctTGCAGGCCCATCAGATGCCCA

GGCCAGCAGCACAGCCGGCCAAGACCAGGGAAACTTGGGGAGCCTCAGAACACCCCCAGGTATTCCAACCTAACCCTGGTGCCCCGCCTCTCACCACCCTTCTTCCTGCTTTAACCTCAACCCCTACACAAAGCCTGGGCCACTTAATGTGGCATCAAACAGATGCCTCA

+
+a score=232090
+s hg18.chr1            162967 2659 + 247249719
ATAAATCAGTCTAATCTCGAAAATAAAAAAGACTTAACAGATATACAATTGCACGTTAGAATGCTAAAAACCATAAACATATAACAACTTAAAGTACATATAAATTCAATATATATCCAATCATTGTAACTATGACACAGTAGAATATTAAAATACTATTTTCAAAATGTATACAAGCTTAATGTTCTATGTATTCAAACTATTTATTCAAAATACAAATCATCAACATACATTGCCACTAATATTCAGTCCCTTCACAGGACA--TGATTCACTGGGAGTTAATAAATTAGCAGCCAGCAGGCAGTGACACACCGCAAAAATGAAAACCAAGAGGTGAAATAGTTCTGAAATAAAGGTTTTAAAGCTAACAGAAATCACTGAATTACTAAGTCATTAGCACTAATTTTGAGCCAACTAACTAATTAATATGAGATGATACAATGTCCTATACTTTGGTAAATACAGACTATGTTTAAACAATGTCTGTAACGTGACTTGTAAAATGCTCCTGGCTTTACAAAGATGTGATTAAGATGTAGTAACACATGCTAAACCATTTCCCCCTGCAGAGCATGTGGTAACTTTCATCAGTCACACTGAGAGTACAGAAGATAAAGGAAAAGGTCATGGATTTCGCTGAGAACTTACCAGAGTTGAACTCCCTCATTTTCCGTTCCCCAGCATTGGCAGGTTCTGGGACTGGTGGCTGTGGTGGCTCGTTGGTCTTTGTCTCTTAGAAGGTGGGGAATAATCATCATCTTGAAAAAGAAAAAATGGTCATTACTGAAGGAACCATCTTAGGTTACAGCCACCTCTGGGTCAATTCCCAACATTCAAAAGCTGAGCAGGGCTTTAAAGCTATCTTATTAATAATTATTTCTGTATTGCGAACTTCAGCATACTTTTTTCTAGTTACATTTGAAATGTTATTCTTTTGGGA

TGTGCTCAAGTGAGTACTGCTTTTTCCTCTGCCTTGCTTCATTACTTTTTAGTTTCCTTCATTTGAATCATCATTGTAAGTCTCCCCTTCTCCTCAAATAACTTTCAAATTGCTGCCAAGAACTACGTTCTATCTTAAGGCTTTTGAGAAAAAACTTTCAATGAAGATAGCCGCCTAAAGTTATACAAATATAGAAGAAACGGGATAAAATAAAGCTTAGATTGG-AAAAAATATTTAAGATTCTACAAAATTCACGCGTAAACAAGGGAAGCTGAGTAATTGTATGTTCAAATACTTTTAACAAGTGCAAAACATGTAGGCTTAAAGAAATAGAGCTggccaggcatggtggttcatgcctgtaattccaacagtttgggaggccaaggcaggcagataacttgaggtcaggaattcgagaccagcctggccaacagagtgaaaccctctctctactaaaaatacaaaaattaggccaggagtgatggctcacgcctgtgatcccagcactttgagaggccgaggcgggtagatcacctgaggtcaggagtttgagaccagcctaaccaacatagggaaaccccgtctctactaaaactacaacattagccgggtgtggtggcacatgcctgtaatcccagctactcgggaggctgaggcaggagaatcccttgaacccaaaaggcaaagattgtggtgagccgagattgtgccattgcactccagcctgggcaaaaacagcgaaactccgtctcaaaaaaaaaaaaaagaaaaaattagccaggcatgg-------------------------------------------------------------------tgaagttgcagtgagctgagactgcaccattgcactccagcctgggtagcagagcaagaccctgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagagagagagagaaagaaagaaagaGGGCTACA

TTATTTATGAAACAGATACTGTTAACTCAGTCACCAGAAAGCCTGTGTATAAATGAGCAGTGAGATATTCAAGCACAGCACACACACACTTCTCAGGACAGCTGTCGTGAGTGTTCCATGCTCGTTTCCTTCTGGATACATCAGCAACTCACTCTGCTATGATCCTGCAATACATCTCATGTTAGAATTAGAGACATCTGggccaggcacagtggctgacgcctgtaatcctaacactttgggaagccgaggcaggcagatcacctaaggtcaggagttcgagaccagcctggccaacatggtgaaatgctgtctctaccaaaaatacaaaaaattagctgggcatggtggcgcgcgcctgtaatcccagctactcgggagcctgaggcaggagaatcgcttgaacccgggaggtggaggttgcagtgagccgagatcgtgccactgcactccagcatgggggacggagcaaggctctgtcaaaaaaaaaaaacagaaaaagaaaaagaaaaaAGAATTAGAGACATCTGGATCAAATCAGCTGCCAGTCTCGCAAAGTGTCGGGTAACATCCTATTAAGCTTGCTGCTTACACATCATCTATAAAATACTGAAAATATCATTTTAAGAAATCttttttttattttgagacagagttttgctcgttgcccaggctggagtgcaatggtgcgatctcagctcactgcaatctctgccccctgggttcaagcaattctccttcctcagcctcctgagtagctgggattacaggcatgcaccaccacgcctggctaatttt

+s panTro2.chr1_random 7293350 2697 +   9420409
ATAAATCAGTCTAATCTTGAAAAATAAATCTACTTAACAGATATACAACTGCACGTTAGAATGCTAAAGACAATAAACATATAACAACTTAAAGTACATATAAATTCAATATATATCCAATCATTGTAACTATGACACAGTAGAATATTAAAATACTATTTTCAAAATGTATACAAGCTTAATGTTCTATGTATTCAAACTATTTATTCAAAATACAAATCATCAACATAAATTGCCACTAATATTCAGTCCCTTCACAGGACACATGATTCACTGGGAGTTAAT----TAGCAGCTGGCAGGCAGTGACACACAGCAAAAATGAAAACCAAGAGGTGAAATAGTTCTGAAATAAAGGTTTTAAAGCTAACAGAAATCACTGAATTACTAAGTCATTAGCACTAATTTTGAGCCAACTAACTAATTAATATGAGATGATACAATGTCCTATACTTTGGTAAATACAGACTATGTTTAAACAATGTCTGTAACGTGACTTGTAAAATGCTCCTGGCTTTACAAAGATGTGATTAAGATGTAGTAACACATGCTAAACCACTTCCCCCTGCAGAGCATGTGGTAACTTTCATCAGTCACATTGAGAGTCCAGAAGATAAAGGAAAAGGTCATGGATTTCGCTGAGAACTTACCAGAGTTGAACTCCCTCATTTTCCGTTCCCCAGCATTGGCGGGTTCTGGGACTGGTGGCTGTGGTGGCTCGTTGGTCTTTGTCTCTTAGAAGGTGGGGAATAATCATCATCTTGAAAAAGAAAAAATGGTCATTACTGAAGGAACCATCTTAGGTTACAGCCACCTCTGGGTCAATTCCCAACATTCAAAAGCTGAGCAGGGCTTTAAAGCTATCTTATTAATAATTATTTCTGTATTGCGAACTTCAGCATACTTTTTTCTAGTTACATTTGAAATGTTATTCTTTTGGGA

TGTGCTCAAGTGAGTACTGCTTTTTCCTCTGCCTTGCTTCATTACTTTTTAGTTTCCTTCATTTGAATCATCATTGTAAGTCTCCCCTTCTCTTCAAATAACTTTCAAATTGCTGCCAAGAACTATGTTCTATCTTAAGGCTTTTGAGAAAAAACTTTCAACGAAGATAGCCTCGTAAAGTTATACAAATATAGAAGGAACGGGATAAAATAAAGCTTAGATTGGAAAAAAATATTTAAGATTATACAAAATTCACGCGTAAACAAGGGAAGCTGAGTAATTGTATGTTCAAATACTTTTAACAAGTGCAAAACATGTAGGCTTAAAGAAATAGAGCTggccaggcatggtggttcacgcctgtaattccaacagtttgggaggccgaggcaggcagataacttgaggtcaggaattagagaccagcctggccaacagaatgaaaccctctctcgactaaaaatacaaaaattaggccaggagtgatggctcatgcctgtgatcccagcactttgagaggccgaggtgagtagatcacctgaggtcaggagtttgagaccagcctaaccaacatagagaaaccccgtctctactaaaactacaacactagccagatgtggtggaacatgcctgtaatcccagctactcgggaggctgaggcaggagaatcccttgaacccgaaaggcaaagattgtggtgagccaagattgtgccattgcactccagcctgggcaaaaacagcgaaactccctctc-aaaaacaaaaaaagaaaaaattagccaggcgtggtggcgcatgcctgtaatcccagctacttgggaggctgaggcaggagaatcgcttgaacccaggaggctgaagttgcggtgagctgagactgcaccattgcactccagcctgggtagcagagcaagaccctgtctc----------aaaaaaaaaaaaaaaaaaaaaGAGAGAGAGAGAAAGAAAGAAAGAGGGCTACA

TTATTTATGAAATAGATACTGTTAACTCAGTCACCAGAAAGCCTGTGTATAAATGAGCAGTGAGATATTCAAGCACAGCACACACACACTTCTCAGGACAGCTGTCGTGAGAGTTCCGTGCTCATTTCCTTCTGGATACATCAGCAACTCACTCTGCTATGATCCTGCAATACATCTCATGTTAGAATTAGAGACATCTGggccaggcacagtggctgacgcctataatcctaacactttgggaagccgaggcaggcagatcacctaaggtcaggagttcgagaccagcctggccaacatggtgaaacgctgtctctaccaaagatacaaaaaattagctgggcatggtggcgcgcgcctgtaatcccagctactcgggagcctgaggcaggagaatcgcttgaacccgggaggtggaggttgcagtgagccgagatcgtgccactgcactccagcatgggggacggagcaaggctctgtcaaaaaaa--------------aaaaaaaaaaaaaaaTTGGAGACATCTGGATCAAATCAGCTGCCAGTCTCGCAAACTGTCGGGTAACATCCTATTAAGATTGCTGCTTACACATCATCTATAAAATACTGAAAATATCATTCTAAGAAATCtttttt---ttttgaaacagagttttgctcgttgcccaggctggagtgcagtggtgcgatctcggctcactgcaatctctgccccctgggttcaagcgattctcctgcctcaggctcctgagtagctgggattacaggcgcgcgccaccatgcccagctaatttt

+
+a score=90424
+s hg18.chr1       165626 1010 + 247249719
gtattttcagttgagacagggtttctccatattggtcaggctggtctcgaactcctgacctcaggtgatccactgaccttggcctcccaaagtgctgggattacaggtgtgagccaccatgcctagccAAGAAACCCTTATTTTAAAACAagccaggcgcggtggctcatgcctataatcccagcactttgggaagccaaggcaggtggatcacttgac-gtcagtagtttgagaccagcccgggcaacatgttgtaaccccatctctactaaaaatatattttaaaaattagctgggcatggtggtgggcacctgtaatcccagcttctcaggaggctgaggcaggagaaccacttgaacctgggaggtggaggttgcagtgagcggagatcacgccactgcactctagcctgggtgacaatagaaagactccatctcaaaaacaaaacaaaacaaaacaaaacaaaaAACCACTAAAAAAAAGACTCCATTTCAAAAACAAAACTAAAACCAAAAACACAACACAAATGTAGTACACAAATGAAGATAATTACTGTGTTAAACACAGTTTCATAGAAAATAAAAGACCAATCAAATACAATAAGCTGACTTTTTagatgggtatgttattcttctttcacagctaaagaaacaggctcagagaatgttatttgattggaccGTGTTGCATTTCTGGACAGTGCAGCTGAGATCAGACTTTGTGTGTAACTCCACTAGCCTACCAGGGTGCCTCTCATAAAGGTAAGAAATGTAAATTTGGCCTAATATACAAAGTTGCCAGGGCAGCACTGGGTCAATTCTACATACAGTACTTCTATGTTCATCAAGGGAAACCTTAAGGGAAAGTGAAAATGCTTCTAGAAGGCGACTGGACACCAGCGCCTTTGCTTGTTGCCTTTGGGCTCTTCTTCTAAGGCCAACAGTG
 ACCTGAAATTATTGACTGGCTTTTCCAATCAAGTGGACAAAATGGTACCAAGGTCACCAACATC 
+s panTro2.chr1 224080226 1004 + 229974691
gtattttcggtagagacagggtttctccatattggtcaggctggtctcaaactcctgacctcaggtgatccactgaccttggcctcccaaagtgctgggattacaggtgtgagccaccatgcctagccAAGAAACCCTTATTTTAAAACAagccaggcgcggtggctcatgcctataatcccagcactttggggagccaaggcgggtggatcacttgactatcagtagtttgagaccagcctggacaacatgttgtaaccccatctctactaaaaatatatttaaaaaattagctgggcgtggtggtgggcacctgtaatcccagcttctcaggaggctgaggcaggagaatcacttgaacctgggaggtggaggttgcagtgagtggagatcacgccactgcactctagcctgggtgacaacagaaagactccatctca-----aaaacaaaacaaaacaaaacaaaaAACCACTAAAAGAAAGACTCCATTTCAAAAACAAAACTAAAACCAAAAACACAACACAAATGTAGTATACAAATGAAAATAATTACTGTGTTAAACACAGTTTCATAGAAAATAAAAGACCAATCAAATacaataagctgcctttttagatggg--tgttattcttctttcacagctaaagaaacgggctcagagaatgttatttgattggaccGTGTTGCATCTCTGGACAGTGCAGCTGAGATCAGACTTTGTGTGTAACTCCACTAGCCTACCAGGGTGCCTCTCATAAAGGTAAGAAATGTAAATTTGGGCTAATATACAAAGTTGCCAGGGCAGCACTCGGTCAATTCTACATACAGTACTTCTATGTTCATCAAGGGAAACCTTAAGGGAAAGTGAAAATGCTTCTAGAAGGCGACTGGACACCAGCGCCTTTGCTTGTTGCCTTTGGGCTCTTCTTCTAAGGCCAACAGTG
 ACCTGAGATTATTGACTGGCTTTTCCAATCAAGTGGACAAAATGGTACCAAGGTCGCCAACATC 
+
+a score=3684
+s hg18.chr1            166636 39 + 247249719 GATGTAGAACATCGATGTTCTACAACATTGCTTAACGCA 
+s panTro2.chr1_random 1501241 39 -   9420409 GATGTAGAACATCGATGTTCTACAACATTGCTTAACGCA 
+
+a score=51959
+s hg18.chr1            166675 605 + 247249719
AGGGGAGACGCTCCTGACTCAGAGTGTTTAATTGCTCACCTACTTCTTTTTCTGCCCTCTTGGGCTTCTGAAATGAAAAGAACCCTGGGGTGATACAGTGAGTCAAAGGGGTGCCAGCCGCATCACAGCAAAATAGATTCCTAAAAAATCCCTGGCCTAAGATGACAGCCTTGGCTGGATCAGTTTGAATGTGCTGATAGTGGACATGGTAGAATGAAGGTGGTTGAAATGTTCATATTAAAGAACTTCCACCCAGATTGCAAGAAAAGAGAGAAGAATGGAGACGGCAGCACGAGCCCCTACAATAAAAGCAGATGTTTTGAGATCAGTTATATTTCTTCTGACAAAAATTAAAGACAGAAACCAAAGTTTAGCCTGAGACTACAATTAATTGGGCAATAAGCCAGAGGCACATATGGCATAAGACAGATTTAAACATTTCTCCCTGATATTAATACAAACACTAAAATTACAAATACTTTGATTCCaaataaaacaaatatttaaaaaatttaatGAATAAACACTGGGGTCTACAGTAGTATTTGA---AGATCTCACAAACAGGTTTGGTTTTTGAAGGTTAGAACTGGTGGTCTAGAGAATTC

+s panTro2.chr1_random 7554708 605 +   9420409
AGGGGAGACGCTCCTGACTCAGAGTGNTTA-TTGCTCACCTACTTCNTTTTCTGCCCTCTNAGACTTCTGAAATGAAAAGACCCCCGGGGTGATACAGGGAGTCAAAGGGGTGCCAGCCGCATCACAGCAAAATAGATTCCTAAAAAATCCCTGGCCTAAGATGACAGCCTTGGCTGGATCAGTTTGAATGTGCTGATAGTGGACACGGTAGAGTGAAGGTGGTTGAAATGTTCATATTAAAGAACTTCCACCCAGATTGCAAGAAAAGAGAGAGGAATGGAGATGGCAGCACGAGCCCCTA-AATAAAAGCAGATGTTTTGAGATCAGTTATATTTCTTCTGACAAAAATTAAAGACAGAAACAAAAGTTTAGCCTGAGACTACAATTAATTGGGCAATAAGCCAGAGGCACATATGGCAT-AGACAGATTTAAACATTTCTCCCTTATATTAATACAAATACTAAAATTACAAATACTTTGATTCCAAATAAAACAAATATTTTAAAACTTTAATGAATAAATACTGGGGTCTACAGTAGTATTTGAAGGAGATCTCACAAACAGGTTTGGGTTTTGAAGGTTAGAACTAGTGGTCTGGAGAATTC

+
+a score=16857
+s hg18.chr1       217280 205 + 247249719
GATTCATGGCTgaaatcgtgtttgaccagctatgtgtgtctctcaatccgatcaagtagatgtctaaaattaaccgtcaGAATATTTATGCCTGATTCATGGCTgaaattgtgtttgaccagctatgtgtgtctcttaatccactcaagtagatgtctaaaattaaccatcaGAATATTTATGCCTGATTCATGGCTgaaatcac

+s panTro2.chrUn 47945019 205 -  58616431
GATTCATGGCTgaaatcgtgtttcgccagctatgtgtgtctcttagtccagtcaagtagatgtctaaacttaaccatcaGAATATTTATGCCTGATTCGTGGCTgaaattgtgtttgaccagctatgtgtgtcccttagtccagtcaagtagatgcctaaagttaaccatcaGAATATTTATGCCTGATTCATTGCTgaaatcgt

+
+a score=175275
+s hg18.chr1     217485 2070 + 247249719
gtttgaccagctatgtgtgtctcttaatccagtcaagtagatgtctaaaattaaccatcaGAATATTTATGCCTGATTCATGGCTgaaatcgtgtttgaccagctatgtgtgtctctcaatccgatcaagtagatgtctgaaattaaccatcaGAAtatttatgcctgattcatggctgaaatttcaggatgaaagctatgaaatctctatttgtgtttgtgtatctattaatgtatgttatgtatatgtgatattttcttaactccagagagcattgcaaaattcatttatgaaaacctctaaaagtgctctattctaacttggcttggaaaaaaataagcatttataaataaatattcaccaaactcctagaaatataggaactgatcaaatgtttcttaagttaacatgatttggataaaacttagttaaataagattaatatagtatttttggtgtaataaaacaactatatcttcaaaattatcattattgaatataaaacaagcataaattcctattctgcttgagttctagtcaaataagctaatattatacttactagaaacgtaaaatcttaaagcttatagatttgattctaaTTAAGTTGTCATTCTTATGAAAAACATTATTTTTTTTATGCTGAAAAGATACACATATATTTAGAGTTAGCCAGCTGGACTCAGTTTAGGTGATCCCAATTTTGTTACAACATCGAAAGCATCATAATCAGGAGCAAGTCGAACATATGCCTTCT---CTTTATCAGGACAAATCAGGGTGGTGACCTTGGCCACATCACTGTCATAGAGCTTCTTCACAGCCTGTCTGATCTGGTGCTTGTTGGCTTTAACATCCACAGTGAACACAAGCGTGTTGTTTTCTTCTATCTTCTTCACGGCCGACTCAGTGGTCAGCGGAAACTTGATGATAGCATAGTGGCCAAGC

TTGTTTCTCCTGGGGGTGCTCTTCCGAGGATATCTGGGCTGCCTCCGGAGTCGCAGTGTCTTGGGCCGCCTGAAGGTGAGTGACATGCGGATCTTCTTTTTTGCGTGTGGCTGCGGACACCTTTCAACACTGCCTTCTTGGCCTTTAAGGCCTTCGCTTTGGCTTCGGCTTTAGGAGGAGCAGGAGCTTCCTTCGCTTTCGGTGCCGTCTTGTGAAAAGCGAAAAACATTATTTCAAAAATAATTTGTTTACAGTAAATCTgcctaagaatagtttccaaagtacttttggtaatttttaaccttaaagttaagctaagtaaaagatttgcattaaatatctagaccatttataaataagatacaatactaaaacattaattactgaacataaataattcaagtttatatacttttggcttcctgtttttacagagagactaaagatattttggcccgttaataaacatgtttttttctgccacactgaggaattgtattatgagaaaacacatccctctagatgttgggagatggtatattcatacattttctaacctactatagaatgctaatatatgacagtttataaccgtctacttcctagttttctctggaaaataaaagattactaagtattaaaattataatcaatatatgtaaataaaactactagaaataatagaataactagaaacaactctatgcaaagcatgcaagaaaagtagggcatgtttcgcaagtaaagtaggttgcattttttataaggaaaaCCATACAGAAGATAcaaataaaaagagatacctaaccttccctgtgttatatttgtatgggtaaaatgttatgttttcagaaattatataaaattcctggaagtttgtcaatgtcctccttatccatgctatgtgccactatagagtaatgagtcataattccaattattactttaaatgttgtgccaggcacagtggctcatgcctataatcccag

cactttaggaggctgaggcgggtggatcacaaggtcaggagatccagaccatcctggttaactcggtgaatctccatctctattaaaaatataaaaaattagccgggcgtgatggaaggcacctgtagtcccagc

+s panTro2.chr19 196757 2066 +  64473437
gtttgaccagctgtgtgtgtcccttaatccagtccagtagatgtctagaattaaccatcggaatatttatgcctgattcatggctgaaatcgtgtttgaccagctatgtgtgtctcttaattcagtcaagtagatgtccaatattaaccatcaGAAtatttatgcctgattcatggctgaaatttcaggatgaaagctatgaaatctctatttgtgtttgtatatctattaatgtatgttatgtacatgtgatattttcttaactccggataccactgcaaaattcatttataaaatcctctaaaagtgctctattccaacttggcttggaaaaaaataaccatttataaataaatattcaccaaactcctagaaacatagtaactgatcaaatgtctcttaagttaccatgatttggataaaacttagttaaatgagattaatataatatttttggtgtaataaaacaactatgtcttcaaagttatcactattgaatataaaacaaacataaattcctattctgcttgagttctagtcaaataagctaatattatacttac-agaaatgtaaaatcttaaagcttatagatttGGTTCTAATTAAGTTGTCATTCTTATGAAAAACATTATTTTTT--ATGGTGAAAAGATACACATATATTTAGAGTTAGCCAGCTGGGGTCAGTTTAGATGATCCCAATTTTGTTGCAACATCCAAAGCTTCATAATCAGGAGCCAGTTGAACATATGCCTTCTTCTCTTTATCAGGACAAATCAGGGTGGTGACCTTGGCCACATCACTGTCATAGAGCTTCTTCACGGTCTGTTTGATATGGTGCTTGTTGGCTTTAACATCCACAAAGAACACAAGCATGTTGTTTTCTTGTATCTTCTTC-CAGCCGACTCAGTGGTCAGTGGAAACTTGAT---AGCATAGTGGTCAAGC

TTGTTTCTCCTGGGGGTGCTCTTCCGAGGATATTTGGGCTGCCTCCGGAGTCGCAGTGTCTTGGGCCACCTGAAGGTGAGTGATATGCAGATCTTCTTTTTTGCGTGTGGCTGTGGACACCTTTCAACACTGCCTTCTTGGCCTTTAAAGCCTTCACTTTGGCTTCGGCTGTAGGAGGAGCAGGAGCTTCCTTCGCTTTCGGTGCCATCTTGTGAAAAGTGAAAAACATTATTTCAAAAATAATTTGTTTACAGTAAATCTgcctaatagtagtttccaaagtacttttgctaatttttaaccttaaacttaagctaagtaaaagatttgcattaaatatctagaccatttataaataagatacaatactaaaacattaattactgaacataaataattcaagtttatatacttttggcttcctatttttacagaaagactaaagatattttggcctgttaataaacatgtttttttctgccacattgagaaattgtattatgaggaaacgcatccctctagatgttgggagatggtatattcatacattttttaacctgctatagaatgctaatatatgacagtttataactgactacttcctagttttctctggaaaataaaagattactaagtattaaaattataatcagtatatgtaaatagaactactagaaataatggaataactagaaacaaccccatgcaaagcatgcaagaaaagtagggcatgtttcgcaagtaaagtaggatgtattttttataaggaaaaCCATACATAAGATAcaaataaaaagagatacctaaccttccctgtgttatatttgtatgggtaaaatgttatgttttcagaaatgatataaaattcctggaaatttgtcaatgtcctccttatccatgctatgtgccagtatagggtaatgagtcataattccaattattattttaaatattgtgctgggtgcagtggcttacacctgtaatcccag

cactttgggaggctgaggaggatggatcacaaggtcaggagatccagaccatcctggctaacccggtgaatctccatctccactaaaaatataaaaaattagccggctgtggtggcaggcacctgtagtcccagc

+
+a score=13860
+s hg18.chr1      219555 161 + 247249719
tactcgggaggctgaggcaggagaatggcgtgaacccaggagacagagcttgcagtgagccgagatcgcactgctgcactccagcctgggcgacagagcaagactctgtctctaaataaataaataaataa----atgttgtctgccacagaaaaaatcgaatAT

+s panTro2.chr3 77587300 165 + 203962478
tacttgggaggctgaggcaggagaatggcgtgaacccgggagacagagcttgcagtaagccgagatcgcaccactgcactccagcctgggcgacagagcgagactctgtctctaaataaataaataaataaatatatgttgtatgccacagaaaaaatcgaatat

+
+a score=33729
+s hg18.chr1     219723 401 + 247249719
gaaaccccgtctctaccaaaaatacaaaaattagatgggcaggacggcatgtgcctgtagtcccaggtaatcaggaggctgaggagggaggatcgtttgcacccaggaggtagaggttgcagtgagctgacattgcacctttgcactccagcctgggcgatagagccagaccctgtctcaaaaaaaaTTTTTTT-AAATgaaaactatagccattgtgagttatcagattctagtcttgtttcttgtttctgggctatttttacctctttgtaaactggatcctgccatctgatgaattttGTCCCACAATGATACTTGGGGAACAAGAAGCCAAGTATTGTCTCTCCTACTAATGTATCTATTGTCAGTTAATTTGAAGGTCTCCAACCCTGGAACAAAGT

+s panTro2.chr19 200660 402 +  64473437
gaaaccccatctctaccaaaaatacaaaaatgagatgggcatgatggcatgtgcctgtagtcccagctaatcaggaagttgaggagggaggatcacttgcacacaggaggtagaggttgcagtgagctgagattgcacctttgcaccccagcctgggcaacagagccagaccctgtctcaaaaaaaattttttttaaaggaaaactatagctattgtggattatcagattctagtcttgtttcttgttttggggctatttttacctctttgtaaactggatcctgccatctgatgaattttGTCCCACAATGATACTTGTGGAATAAGAAGCCAAATATTGTCTCTCCTACTAATATATCTATTGTCAGTTAATTTGAAGGTCTTCAACCCTGGAACAAAgt

+
+a score=23697
+s hg18.chr1      220124 270 + 247249719
TAGAAGAGGAAGGTTCTACTCCCCAAaatgcataaccaaattgtgctacattcatgtaatggaatactatttagccatagaaaggaacaagatatcaacacacacaaagacatgagtgaatcttgcatgcacattgctaagtggaagaagacagtctgaggaggatacacatagtgtgacctcatttaatgagacactggggaaggcaaactacacagatgggaagccattggctccatggggtgggggtttgaggcattccatatgata

+s panTro2.chrUn 1540276 270 +  58616431
TAGAAGAGGAAGGTTCTGCTCCCCAAaatgcataaccaaattgtggtacattcatgtaatggaatactatttagccatagaaaggaacaagctatcaactgacacaaagacatgagtgaatcttgcatgcacattgctaaatggaagaagacagtctgaggaggatacacacaatgtgatctcatttaatgagacactggagaaggcaaactatacagatgggaagccattggctccatggggtgggggtttgaagcattccatatgata

+
+a score=49220
+s hg18.chr1       220394 611 + 247249719
ctttaatagtgggatatctgccacaatgcatttgtcgaaatatgcagaattttacagccaaatggttaaagcaaactctattcaaattaaatcaaattactcaggatgtggagtatcccaggacagaatacatcatgtgaaaaagaatttatgctacaaattacgatggtttggatgtggtttgtccccacaaaaactcatgttgaaatttgactcccactgtgtcagtgtggggcggtggggcctagtggacggtgtttgggtcgtggggacggatccctcatgaaaggattaatgtcctccatgggggtgagtgagttctgttctcacaggaatagat-aattcctgcaggagcaggtaattaaaaagagtctggcttccttggcttccctcttgctttcacttctgctatgtgatctctggtgcaccccttgctccccttccactttccaccatgaggtgaaaaagactgaggccccgccagatgcaactgcccaatctcagacattccagccaccagtattgtgaaccaaatgaaacttttttacttataaattacgcagcctcaggtattctgttacagaagcacaaaatggactaagacacaaatc

+s panTro2.chrUn 56831951 612 -  58616431
ctttaatagggggatatctgccacaatgcatttatcaaaatacacagaattttatgaccaaatgggtaaatcaaactctattcaaattaaacaaaattactcaggatgtggagtatcccaggacagaatgcatcacgtgaaaaagaatttatgctacaaattactatggtttggatgtggtttgtccccgcaaaatctcatgttgaaatttgacccccaatgtggcagtgtgaggcggtggggcatagtggatggtgtttgggtcatggggacggatccctcatgaatagattaatgtcctccacagggatgactcagttctgctctcataggaatggattaattcctgcaggagtgggtaattaaaaagagtctggcttccttggcttcccttttgctttcacttttgctatgtgatctctggtgcaccccttgctccccttccgctttccaccatgaggtgaaaaagactgaggccccaccagatgcaactgcccaatctcagacattccagctactagtattgtgagccaaatgaatcttttttacttataaattagccagcatcaggtattctgttacagaagcacaaaatggactaggtaaaaactc

+
+a score=282229
+s hg18.chr1       221014 3176 + 247249719
actttgaaaatgaatagaatctgtaggctgaaggcacatgaactatacttcattattggattccattttataaagttctttccaacagaagcaattgtgaacaattgtaaaaccacagtgtctgtatctggagtaaaacaatgacttacataagtcgcagatggtgggaaccagctttctcactgttgaagtgggaggttacaaattagcaagacgagaaggctagaatgattcctgtgatagtagatcagaggtggagacatcaacgtaaacttatgcttagtttaatatagatacacacagttctacatagaaaactttataattaggtgtgtgtaggtaggttagacacgcacatatacttcctagcattgctaatgagggacaagatacaatgtgcattcagcagccacatgtaagttttcccaccattctgaaaggaatcaggctctttgaagaaatgtctgatactagaactgggacagtaaatataggagccaggataatctggaagtatcagaaagtaagtactaaaaaaattaaaatatatcaaacaaaaataaaagccaataaaaacagctaccgatggccaacacaggaaggaattgtgcaacataatgctatagtgtcaaataataactaaagcttaaagtaattatctaggtgtctgtatttgtatacctaggtgaataagcaaatggagttgcatagaaatctcctttgcaaaagaattccaaataactgatgtagacactcagccatcaagaaggtggagccaactcctcactccgtaagtgtgggctctgcatagtgacttgctccaaaagaacacatgcagtacggacaaggaggaaaaataacttcacagtggagaaatctgacaaacagtagctctgccaaatgatccaagtgaatatcaaagctgacagttcaccttgagaacatga

agtgacaatggggggcattctacaaaattcctgaccaatcctcctcagtgctatgaaggtcatcatgagatggaaagcctgacacactgtcacagccaggaagagcctatgtgatgactacatgccgtgcgggatcctggatgggatcctgggtcagagtaagatagaactaagggaatccaaatgaaatatgaacttcagttaataacagtctatcagtattggttcattaactgcggcaaattatgtaagatattaataagccatgtgagacacactgatagaagatgttaataagagaggaaactaggttgcggctacatgggaaatctctgctttttttttttgacgatttctgtgtaagtaaaaaaaagacgtaaaataaaactttatttaaaaCACAGTTTTTTTAACACTTCCTTGTTTAATTATTTATACCATGAATTACTAGTAATTGACACTGTTAACTAGTCCTGTTTTTTAAAATAAGAGCAATTATGACACAAAAAATTAAACAGTGCAGACTGATATATAAATCAAAACAAATGTCCTTTACATGTTTTCTGTTACAGTAGTAACA-ATATGTGTAAACTTAATTATCATATTTTTTTCTTGTGCTGTGGTTGTGTCCTGGGTTCATTCTCTAAAATGCTGTTCACCTTAGACCAGGAAAAATATTAACCATACAGACTCTGTTTCAAGTCATAGCTGAATATTTTCAAAAGAGTGACTTTGTAAAAACATGTTCCAATGGCAAATTGATTCATTGTGATGGGATCAATTATTCCAAAGACTTCTTGTCTTTATTTTGTTCCCATGCCTACCTTTTAGCCATAATACAACAGAATCAAATATTGGCCACTGGGAAAAAA--TATTCAAAGAAAGAAAGAATGTGAACAGAACTTATGACCATGATGATTCAATGTTTTACCACAATGCTTTCTAAAACAAAAGAGTCTAAAAGGATATTCAAAGTCAATTTCCTC

AGCGAGGATTTGCAGAAAATGAGGAAACTAGAAAAACAAAAATGGCGGGACATTCTACGGGTGATTTTAAATGTTGCTATGTTTTATGGGAAAAAATACTTTACCTTTTAAAGAATCACAAAGAATTATTGGAAACCCAAACTCTGGAATGTTTGCAAATTTAGTTGAGCTTCTGTGTAATTATGTCTATATAGGTAGCCATGAAGTTGATGATTTCTTAAAAATCTGTGCCTTATTTGTGTAATAAAAGACACAATGAATAATTAATACTCATAGGAACACTTACgaagggaaaataaatcttggggactcaaaatcactaagctaaagggaaaagtcaagctgggaactgcttagggcaaacccgcctcccattctatccaaa-acacccgtctgatcacctagataaatgcatacctgattgcctcacatggagagggtaatcagcaatgcaaaagaatgaaaccatttgtctcttacctacctgtgacctggaagccccctgtctggccttctcacctttctggactgaaccaatgtacatcttacacgtattgattgatctctcgtgtctccctaaagtgtataaaaccaagctgtgccccgaccaccttgggcccatgttgtcaggatctcctgaggaggcatcacaggcgcacatcctcaagattggcaaaataaactttctaaaaaatctgagagctgtctcagattttcagggttcacaCATGTAATGTAGGATGTCAATGTTTATAAAAGGGATGTTATTCTATCTACTATTAGAAATATGCTGTCAATTAACCTTAAACTTTCTCAACACAATAAAAAATGTTGATGAGGTACAAATAATATATCTAGGCTTAAATAGTGTTGCAAGTTTTAATATGCCTACTTTTCAATTTTTCAATACTATCTTTACTAATTTAACACTGTAAGAAAAATGAGTAATTAAAACATGAATAAAAGTGTTTACAGGGGATGCACATGT

TTCCTCCAGCCTCTGCCTATACCCAACTTTCATCCCAACTGTCCTGATGGTGGCTCTAAGCATTTCTCCTTTCTCTATACCAAGATATCTCCCCAGAAACAAACCCAAATCTTACTATATGTTATGGCACGCTATGATGATGAGCAGCGATGAGCAGCCGAAGCCTCAAGGAAGGGATGCTTTTGTAAAACAAGACTTGTGGAATATAACATGTGAAAGTAAAGCCCATGGCAGAACTCCCTCCTCAGCACACGG

+s panTro2.chrUn 56832599 3177 -  58616431
actttgaaaatgaatagaatctgtaggctgaag-cacatgaactacacctcatcattggattccattttataaagttctttcca-cagaagcaattgtgaacaattgtaaaaccacagtgtctgtatctggagtaaaacaatgacttacataagtcgcagatggtgggaaccagctttctcactgttgaaatgggaggttacaaattagcaagacgagaaggctagaatgattcctgtgatactagatcagaggtggagacatcaacgtaaacttatgtttagtttaatgtagatacacacagttctacatagaaaactttataattaggtgtgtataggtaggttagacacacacatatacttcctagcattgctaatgagggacaagatacaatcttcattcagcagccagatgtaagttttcccaccattctgaaaggaatcaggctctttgaagaaatgtctgatactagaactgagacagtaaatataggagccaggataatctggaagtatcagaaagtaagtactaaaaaaattaaaatatatcaaagaaaaataaaagccaataaaaacagctaccgacggccaacacaggaaggaattgtgcaacataatgctatagtgtcgaataataactaaagcttaaagtcattatctaggtgtctgtatttgtatacatagctgaataagcaaatggagttgcatagaaatctcctttgcaaaagaattccaaataattgatgtagacactgagccatgaagaaggtggagccaactcctcactccgtaagtgtgggctctgcatagtgacttgctccaaaagaacacatgcagtacggacaagcaggtaaaataacttcacagtggagaaacctgacaaacagtagctctgccaaatgatccaagtgaacatcaaagctgacagttcaccttgagaacatgA

AGTGACAAtggggggcattctacaaaattcctgaccaatcctcctcagtactatcaaggtcacc-tgagatggaaagcctgacacactgtcacagccaggaagagcccacgtgatgactacatgtcatgcgggatcctggatgggatcctgggtcagagtaagatagaactaagggaatccaaatgaaatatgaactttagttaataacagtctatcagtattggttcattaactgtgacaaattctgtaagatattaataagccatgtgagacacactgatagaagatgttaataagagaggaaactaggttgcggctacatgggtaatctctgcttttttttttggacgatttctgtgtaagtaaaaagaagatgtaaaataaaactttatttaaaaCACTGTTTTTTTAACACTTCCTTGTTTAATTATTTATACCATGAATTACTAGTAATTGACACTGTTAACTAGTCCTGTTTTTTAAAATAAGAGCATTTATGACACAAAAAATTAAACAGTGCAGACTGATATATAAATCAAAACAAATGTTCTTTACATGTTTTCTGTTACAGTAGTAACACATATGTGTAAATTTAAGTATCATATTTTTTTCTTGTGCTGTGGTGGTGTCCTGGGTTCATTCTCTAAAATGCTGTTCACCTTAGACCAGGAAAAATATTAACGTTACAGACTCTGTTTCAAGTCATAGCTAAATATTTTCAAAAGAGTGACTTTGTAAAAACATGTTCCAATGGCAAATTGATTCATTGTGATGGGATCAATTATTCCAAAGACTTCCTGTCTTTATTTTCTTGCCATGCCTACCTTTTAGCCGTAATACAACAGAATCAAATATTAGCCACTGGGAAAAAAAATATTCAAAGAAAGAAAGAATGTGAACAGAACTTATGACCATGATGATTCAATTTTTTACCACAATGCTTTCTAAAACAGAAGAGTGTAAAAGGATATTCAAAGTCAATTTCCTC

AGCGAGGCTTTGCAGAAAATGAGGAAACTAGAAAAACAAAAATGGCAGGACATTCTACGGGTGATTTTAAATGTTGCTATGTTTTATGGGAAAAAATACTTTACCTTTTAAAGAATCACAAAGAATTATTGGAAACCCAAACTCTGGAATGTTTGCAAATTTAGTTCAGCTTCTATGTAATTATGTCTATATAGGTAGCCATGAAGTTGATGATTTTTTAAAAATCTGTGCCTTATTTGTGTAATAAAAGACACAATGAATAATTAATGCTCATAGGAACACTTACgaagggaaaataaatcttggagactcaaaatcactaagctaaagggaaaagtcaagctgggaactgcttagggcaaacccgcctcccattctatccaaagacacccgtctgatcaccgagataaatgcatacctgattgcctcacgtggagagggtaatcagcaacgcaaaagaatgaaaccatttgtctcttacctacctgtgacctggaagccccctgtctggccttctcacctttctggactgaaccaatgtacatcttacacatattgattgatctctcgtgtcttcctaaagtgtataaaaccaagctgtgccccgaccaccttgggcccatgttgtcaggacctcttgaggaggcatcacgggcgcacatcctcaagactggcaaaataaactttctaaaaaatctgagagctgtctcagattttcagggttcataCATGTAATGTAGGATGTCAATGTTTATAAAAGAGATATTATTCTATCTACTATTAGAAATATGCTGTCAATTAATCTTAGACTTTCTCAACAAAATAAAAAATGTTGATGAGGTACAAATAATATATCTAAGCTTAAATAGTGTTGCAAGTTTTAATATGCCTACTTTTCAATTTTTCAATACTATTTTTGCTAATTTAACACTGTAAGAAAAATGAGTAAATAAAACATGAATAAAAGTGTTTACAGGAGATGCACATGT

TTCCTCCAGCCTCTGCCTATACCCAACTTTCATCCCAACTGTCCTGATGGTGGCTCTAAGCACTTCTCCTTTCTCTATACCAAGATCTCTCCCCAGAAACAAACCCAAATCTTACCATATGTTATGGCACGCTATGATGATGAGCAGCGATGAGCAGCCGAAGCCTCAAGGAAGGGACGCTTTTGTAAAACAAGACTTGTGGAATATAACGTGTGAAAGTAAAGCCCATGGCAGAGCTCCCTCCTCAGCACACGG

+
+a score=5815
+s hg18.chr1      224190 71 + 247249719
GGAGCAGACAGGAAGCTGTTGCCTCACCTTCCTCAATGGCCTACAGCCACATCTCCCCAGGTCAGTCTTAA 
+s panTro2.chr3 77593762 70 + 203962478
GGAGCAGACAGGAAGCTTTTGCCTCACCTTCCTCAATGGCCTGTAGCCACATCT-CCCAGGTCAGTCTTAA 
+
+a score=101136
+s hg18.chr1       224261 1125 + 247249719
GGACAATGAAACTCTGGTCTTCACTGTGGACACACCACACTACCAGGCGCTCCAAAGCCATGGTGACCCACCCTCGGGTGGGTCCTGAGGAGAACAAAGCTCTGGTTCTAATTCTAACCCTAACCTTGTCCCAAGACTTTGACACTGAACCTAAATCCTGATCCCTATCCTGGTccctaattctgacccttactttgaccctgactttgatctcgaccctgaccatgaccccacctctaaccatacttctggccctgactctgacccagatcctaatcctatccctaaccctaTTATTATCTTTACAATCTATGTCTAATCTTACCCTCTAGTGCTAAATAGCTGTACCCAAAAGCACTTTAAAATTATTTAACTTCTTTTCCTTGAATTCTCTAAGGACATCCTAAAGGAGATGTCAATATGTATTTTGCATTCCCTCTGAGTGGTATGGCTTCAGATAAGAAGTTCTAATACTTTGCAAGACATAAAAAGTTTGGAGGGTGACAGCACTGGGTTGTTAGGGATGCATGTTGGCATTCgtggtagtcataggtgctgttctccagatattttcagttcatattttatgaatgcattctgactgttccatcccgcctacttacattttcacatggccacatgactttttttttgccaatggaggtgagaagaaataacatgtgactttttcaggagaaatctccaagaaacagagtgctattccgcatacttttttctcttttctatagcaatggggatcttattgattgtccctccttccgtctggattcctgtgttaggatgacacagcacagagctacctctcacctgacccatgatgaaatgtaaataaatgaggaagaagatttttgagccactgaaatttggaggttgtttgtcaccacagtttaacctagcccccatttactgatgcaCGGCTGAAGAAT

GAGTCCGAACTGGATCTGGACAAGACATGTGAAGAGCGCTCCAGGCTGAGTAAAATTCAAGTGTTGTCTCAAAGATAACACTGAGCACGATATGTTATTGGGGTGGGTGTGGGATAAATAAGGTATATCAGGTGAGAATAACAAGAAACTCAACTTTAAAAGACGGTGCCGATTTGGA

+s panTro2.chrUn 56835776 1123 -  58616431
GGACAATGAAACTCTAGTCTTCACTGTGGACACGCCACACTACCAGGTGCTCCAAAGCCATGGTGACCCACCCTCGGGTGGGTCCTGAGGAGAACAAAGCTCTGGTTCTAATTCTAACCCTAACCTTGTCCCAAGACTTTGACACTGAACCTAAATCCTGATCCCTACCCTGGTccctaattctgacccttaatttgaccctgactttgatcttgaccctgaccatgaccccacctctaaccatacttctggccctgactctgacccagatcctaatcctatccctaaccctaTTATTATCTTTACAATCTATGTCTGATCTTACCCTCTAGTGCTAAATAGCTGTACCCAAAAGCACTTTTAAATTATCTAACTTCTTTTCCTTGAATTCTCTAAGGACATCATAAAGGACGTGTCATTATGTATTTTGCATTCCCTCTGAGTGGTATGGCTTCAGATAAGAAGTTCTAATACTTTGCAAGACATAAAAAGTTTGGAGGGTGACAGCACTGGGTTGTTAGGGATGCATGTTGGCATTCgtggtagtcataggtgccgttctccagatattttcagttcatattttatgaatgcattctgac--ttccatcccacctacttacattttcgcatggccacatgactttttttttgccaatggaggtgagaagacataacatgtgactttttcaggagaaatctccaagaaacagagttctattccgcatgcttttttctcttttctatagcaatggggatcttattgatcgtccctccttccgtctggattcctgtgttaggatgacacagcacagagctacctctcacctgaccagtcatgagatgtaaataaatgaggaagaagatttttgagccactgaaatttggaggttgtttgtcaccacagtttaacctagcccccatttactgatgcaCAGCTGAAGAAT

GAGTCCGAACTGGATCTGGACAAGACATGTGAAGAGCGCTCCAGGCTGAGTAAAATTCAAGTGTTTTCTTAAAGATAACAGTGAGCACGATATGTTATTGGGGTGGGTGTGGGATAAATAAGGTATATCAGATGAGAATAATAAGAAACTCAACTTTAAAAGACGGTGCTGATTTGGA

+
+a score=17379
+s hg18.chr1       225388 189 + 247249719
ACACCAAATTGGAAGACAGCAGGAGCTGCCCCATAATACCAGTAAAGTGAGAAGCAGAGATAAACTAGTCCTAGACAGCTGACTCATGTTGGGGGCAGCCCACTCACAGTGGCCCTGACCCAACTCTGACTAGAGGCCACTTGATCTCAACACCAGGGTGCTCAATGGCCCGTCCTGGTACTCTGCTCT

+s panTro2.chrUn 56816265 189 -  58616431
ACACCAAATTGGAAGACAGCAGGAGCTGCCCCATAATACCAGTAAAGTGAGAAGCAGAGATAAATTAGTCCTAGACAACCGACTCATGTTGGGGGCAGCCCACTCACAGTGGCCCTGACCCAACTCTGACTAGAGGCCACTTGctctcaacaccagggtgctcaatggcccgtcctggtactctactct

+
+a score=80560
+s hg18.chr1            225577 931 + 247249719
ACACTGGTTGTAGGAAGGAATCTGCAGGTTGAAATAAGGAGATCATTTCCCTGAGGTTCCGAAGCTCATATTTACTCACCATTTGTTGTTTACTGCTAATGTTGAGCACTGTCAGTAAAATACATAAAACCCtttgccaatccaggaagtgaaaatgacactttactgttttaatttgcatttctctgcttacaagtggattacacacattttcgtgtgctgttggctacttattcattcagaaaacatactaagtgctggctctttttcatgtcctttatcaagtttggatcatgtcatttgctattttcttTCTGATGTAAACTCTCAAAGTCTGAAGTGTATTGTCTTTTCCTGACACATATGTTGTAAATAATTTTCTGGCTTACATTTTGACTTTTAATTTCATTCACGATGTTTTTAATGAATAATTTTAATTTTTATGAATGCAAGTTAAAATAATTCTTTCATTGTGGTCTCTGACATGTCATGCCAATAAGGGTCTTCTCCTCCAAGAGCACAGAAATATTTGCCAATACTGTCCTTAAAATCGGTCACAGTTTCATTTTTTATATATGCATTTTACTTCAATTGGGGCTTCATTTTACTGAATGCCCTATTTGAAGCAAGTTTCTCAGTTAATTCTTTTCTCAAAGGGCTAAGTATGGTAGATTGCAAACATAAGTGGCCACATAATGCTCTCACCTCctttgcctcctctcccaggaggagatagcgtccatctttccactccttaatctgggcttggccgtgtgacttgcactggccaatgggatattaacaagtctgatgtgcacagaggctgtagaatgtgcacgggggcttggtctctcttgctgccctggagaccagctgccccacgaaggaaccagagccaacctgctgcttcctggaggaagacagtccctct

+s panTro2.chr1_random 7323839 929 +   9420409
acactggctgtaggaaggaa-CTACAGGTTGAAATAAGGAGATCATTTCCCTGAGCTTCCGAAGCTCATATTAACTCACCATTTGTTGTTTACTGCTAATATTGAGCACTATCAGTAAAATACATAAAACCCtctgccaatccaggatgtgaaaatgacactttactgttttagtttgtatttctctgcttacaaatggaatacacacattttcatgtgctgttggctacttATTCATTCAGAAAACTTA-TAACTGCTGGCTCTTTTTCATGTCCTTTATCAAGTTTGGATCATGTCATTTGCTGTTTTCTGTCTGATGTAAACTCTCAAAGTTTAAAGGGTATTGTCTTTTCCTGACACGTACATTGCGAATAATTTTCTGGCTTACATTTTGACTTTTAATTTCATTCACGATGTTTTTAATGAATAATTTTAATTTTTATGAATGCAAGTTAAAATAATTCTTTCATTGTGGTTCCTGACATGTCATGCAAATAAGGGTCTTCTCCTCCAAGAGCACAGAAATATTTGCCAATACTGTCCTTAAAATCGGTCACAGTTTCATTTTTTATATATGCCTTTTACTTCAATTGGGGCTTCATTTTACTGAATGCCCTATTTGAAGCAAGTTTCTCAGTTAATTCTTTTCTCAAAGTGCTAAGTATGGTAGATTGCAAACATAAATGGCCACATAATGCTCCCACCTCctttgcctcctctcccaggaggagatagtctccatctttccactccttaatctgggcttggccatgtgacttacactggccaatgggatattaacaagtctgatgtgcacagaggctgtagaacgtgcactggggcttggtctctcttgctgccctggagaccagctaccccacgaaggaaacagagccaacctgctgcttcctggaggaggacagtccctct

+
+a score=5330
+s hg18.chr1            226508 59 + 247249719
gtccctctgtctctgccaaccagttaacctgctgcttcctggagggagacagtccctca 
+s panTro2.chr1_random 8583060 59 +   9420409
GTCCCTCTGTCTCTGCCAACCAGTTAACCTGCTGCTTCCTGGAGGAAGACAGTCCCTCT 
+
+a score=223737
+s hg18.chr1            226567 2476 + 247249719
gtccctctgtctctgccaaccagttaacctgctgcttcctggaggaagacagtcactctgtctctgccaacccagttgaccgcagacatgcaggtctgctcaggtaagaccagcacagtccctgccctgtgagccaaaccaaatggtccagccacagaatcgtgagcaaataagtgatgcttaagtcactaagatttgggCAAAAGCTGAGCATTTATCCCAATCCCAATACTGTTTGTCCTTCTGTTTATCTGTCTGTCCTTCCCTGCTCATTTAAAATGCCCCCACTGCATCTAGTACATTTTTATAGGATCAGGGATCTGCTCTTGGATTAATGTTGTGTTCCCACCTCGAGGCAGCTTTGTAAGCTTCTGAGCACTTCCCAATTCCGGGTGACTTCAGGCACTGGGAGGCCTGTGCATCAGCTGCTGCTGTCTGTAGCTGACTTCCTTCACCCCTCTGCTGTCCTCAGCTCCTTCACCCCTGGGCCTCAGGAAATCAATGTCATGCTGACATCACTCTAGATCTAAAAGTTGGGTTCTTGgaccaggcgtggtggctcacacctgtaatcccagcactttgggaggccgaggcgggtggatcacaaggtcaggagatcaagacgattctggctaacacggtgaaaccccgtctctactaaaaatacaaaaaaattagccgggtgtggtggcaggtgcctgtagccccagctacttgggaggctgaggcaggagaatggcttgaacctgggaggtggagcttgcagtgagccaagatcacgccactgcactccagaatgggagagagagcgagactttctc-------aaaaaaaaaaaaaaaaCTTAGGTTCTTGGATGTTCGGGAAAGGGGGTTA-TTATCTAGGATCCTTGAAGCACCCCCAAGGGCATCTTCTCAAAGTTGGATGTGTGCATTTT

CCTGAGAGGAAAGCTTTCCCACATTATACAGCTTCTGAAAGGGTTGCTTGACCCACAGATGTGAAGCTGAGGCTGAAGGAGACTGATGTGGTTTCTCCTCAGTTTCTCTGTGCAGCACCAGGTGGCAGCAGAGGTCAGCAAGGCAAACCCGAGCCCGGGGATGCGGAGTGGGGGCAGCTACGTCCTCTCTTGAGCTACAGCAGATTCACTCTGTTCTGTTTCA---TTGTTGTTTAGTTTGCGTTGTGTTTCTCCAACTTTGTGCCTCATCAGGAAAAGCTTTGGATCACAATTCCCAGtgctgaagaaaaggccaaactctggaaaaaattttgaatattttgagccaaatgtgaggactacaacctgtgagaacggaaaataaatcctgggaccccagactcactaagccaaagggaaaagccaagctgggaactggcttatgcaaacctgcttcccatctggttcctaaataagatagctattacacaaagataaaaaagctacatccctgcctctacctccatcgcatgtaaaatgtgtattcagtgaacgctgaccaaagacagaagaatgcaacaatttgcctctgatttacccacacccattttttccacttcttcccctttccccaatacccacacttttcccctttacttactgaggtccccagaaaatctttgggaaaagcacggaccacagtttttcctgtggttctctgttcttttctcaggtgtgtccttaaccttgcaaatagatttcttgaaatgattgagactcaccttggttgtgttctttgattAGTgcctgtgacgcagcttcaggaggtcctgagaacgtgtgcacagtttagtcggcagaaacttagggaaatgtaagaccaccatcagcacataggagttctgcattggtttggtctgcattggtttggtctggaaggaggaaaattcaaagtaatggggcttacaggtcatagatagattcaaaga

ttttctgattgtcaattggttgaaagaattattatctacagacctgctatcaatagaaaggagagtctgggttaagataagagactgtggagaccGTGCATAGTTGCTTCCTGATCAGCTCTTTATTTGATTGAGAGTGAGGCAGGGAAGATTAGAGGGAAGCTTACAGTGGAATTCAGGGCTAAGGCTGCTATTCTTTTGCTCCTTGTAACTTCCTACAGTGTTGTCAGCATCCACATACTTCTCTGTGGGGTTggtctcagagccaggttaccttgtcttaggtccagtggcaccctgactggcttggtgtccttgaacaagttacctaacctctccatacctcagtccctcagctgtaaaattaaaaaaaaaaaaaaagaagaagaagagtacctactgtatagcattgatttgaagattgaatgagctggtattatacaacgtttagaagcagtgcctgacacgcaaaaggctctcaacaaatACTATCCTTTACTAATATCCTGTGTGTCTGTATCAGAGCTGGTGGGGTGGAGGGACAGAAACAAGTGGG

+s panTro2.chr1_random 7324768 2478 +   9420409
gtccctctgtctctgccaaccagttaacctgctgcttcctggaggaggacagtcactctgtctctgccaacccagttgaccgcagacatgcaggtctgctcaggtaagaccagcacagtccctgccctgtgagccaaaccaaatggtccagccacagaatcgtgagcaaataagtgatgcttaagtcactaagatttgggCAAAAGCTGAGCATTTATCCCAATCCCAATACTGTTTGTCCTTCTGTTTATCTGTCTGTCCTTCTCTGCTCATTTAAAATGACCCCACTGCATCTAGTACATTTTTATAGGGTCAGGGATCTGCTCTTGGATTTATGTCGTGTTCCCACCTCGAGGCAGCTTTGTAAGCTTCTGAGCACTTCCCAATTCCGGGTGACTTCAGGCGCTGGGAGGCCTGTGCATCAGCTGCTGCTGTCTGTAGCTGAGTTCCTTCACCCCTCTGCTGTCCTCAGCTCCTTCACCCCTGGGCCTCAGGAAATCAATGTCATGCTGACATCACTCTAGATCTAAAACTTGGGTTCTTGgaccaggtgcggtggctcacacctgtaatcccagcactttgggaggccgaggcgggtggatcacaaggtcaggagatcaagaagatcctggctaacacggtgaaaccccgtctctactaaaaatacaaaaaaattagccgggtgtggtggcaggtgcctgtagccccagctactcgggaggctgaggcaggagaatggcgtgaacctgggaggtggagcttgcagggagccaagatcacgccactgcactccagactgggagagagagcgagactttctcaaaaaaaaaaaaaaaaaaaaaaaCTTAGGTTCTTGGATGTTCGGGAAAGGGGGTTCTTTATCTAGGATCCTTGAAGCGCCCCCAAGGGCATCTTCTCAAAGTTGGATGTGTGCATTTT

CCTGAGAGGAAAGCTTTCCCACATTATACAGCTTCTGAAAGTGTTACTTGACCCACAGATGTGAAGCTGAGGCTGAAGGAAACTGATGTGGTTTCTCCTCAGTTTCTCTGTGTGGCACCAGGTGGCAGCAGAGGTCAGCAAGGCAAACCCGAGCCCAGGGATGCGGGGTGGGGGCAGGTACGTCCTCTCTTGAGCTACAGCAGATTAACTCTGTTCTGTTTCATTGTTGTTGTTTAGTTTGCGTTTTGTTTCTCCAACTTTGTGCTTCATCCGGGAAAGCTTTGGATCACAATTCCCAGtgctgaagaaaaggccaaactctggaaaaaa-tttgaatattttgagccaaatgtgaggaccacaacctgtgagaatggaaaatacatcctgggaccccagactcactaagccaaagggaaaagccaagctgggaactggcttatgcaaacctgcttcccatctggttcctaaataagatagctattacacaaagacaaaaaagctacatccctgcctctacctccatcgcatgtaaaatgtgtattcagtgaacgctgaccaaagactgaagaatgcaaccatttgcctctgatttacccacacccattttttccacttcttcccctttccccaatacccacacttttcccctttacttactgaggtccccagacaatctttgggaaaatcacggaccacagtttttcctgtggttctctgttcttttctcaggtgtgtccttaaccttgcaaatagatttcttgaaatgattgagactcaccttggttgtgttctttgattAGTgcctgtgacgcagcttcaggaggtcctgagaacgtgtgcacagtttagtcggcagaaacttagggaaacgtaagaccaccatcagcacataggagttctgcattggtttggtctgcattggtttggtctggaaggaggaaaattcaaagtaatggggcttacaggtcatagatagattcaaaga

ttttctgattgtcaattggttgaaagaattattatctacagacctgctatcaatagaaaggagagtctgggttaagataagagactgtggagaccGTGCATAGTTGCTTCCTGATCAGCTCTTTATTTGATTGAGAGTGAGGCAGGGAAGATTAGAGGGAAGCTTACAGTGGAATTCAGGGCTGAGGCTGCTATTCTTTTGCTCCTTGTAACTTCCTACAGTGTTGTCAGCATCCACATAATTCTCTGTGGGGTTggtctcagagccaggttaccttgtcttaggtccagtggcaccctgactggcttggtgtccttgaacaagttacctaacctctccatacatcagtccctcagctgtaaaatttaaaaaaaaaa-----aagaagaagagtacctactgtatagcattgatttgaagattgaatgagctggtattat---acgtttagaagcagtgcctgacacgcaaaagactctgaacaaatACTATCCTTTACTAATATCCTGTGTGTCTGTATCAGAGCTGGTGGGGTGGAGGGACAGAAAGAAgtggg

+
+a score=198101
+s hg18.chr1       229043 2232 + 247249719
AGAAGGTAAAGAGATGGGCAAATGATCTCTAAACTCTCTCTGGCACTAACACAATTCTTTATTATGTGTTTTGTCTGGCTCTTTATATTGATAGCTGTTCCAGAGGCAATCAATAGCTATTAGTCGGTTTTATTCTTATTTTTCTGTCTGATCTTACAAGGGAGCAAACTGTGGCAAAGTATGAACTTACTTCTCAGGAAATTAACCATTATATTGGCAATCACTGTGATTATTTGAACTTCAGCGTCTGGACAAATTTAGTCACATGAAATACAGAAGAGAGATTTCTCATGGTTAAAACGAAGCTCTCTTTATTTGCTTCTGCTAATTAAAAAATCAGAGCTAAAGATACTTAAACACTACAGTTAAAATGCCATGGTTGTCTATTGGCTTAACGAATTCTCTTATGAAATCAACTCTAAAATGTTATCCATCATAAATCATGAAACGCAATTTTTCTTATTCTCTTTAGAGCTTTACAATTCATCTTAAAGACCAGTGTTTACACTCTCTTCTGTAGGTTGTACAATAACTTTTGGTGAGAAAAAATAAAAGTCTGGCTTTCTGACTCATAGGTGTGTTCCCTTTAACAGAAAAAGAAAATATGTCCTCTTTAAAACTGATGATCATTGGTCACCTCAATTTTATTGAAGTTCACTTCTGACCTCTTTAGATGTAGTTCTCTACATAAAACTGCCCAACAGAATTCTCTGTCTGAATGTCTCCTCCACAAACAAAATTTTAAGAACTAAAATTATCATCTTTCCTTCCAAATATGCTCTCCCTATGTCCCCAGGGCTCTCCATGTGTAGAGCTGAGACCATTTGCCACTCAGTTTCCTCACCCAATTAATTACAAGTCCCAACAATTTTCCGGtttttttgtttttgtttttgtttttagacggagtcttgctctgtcaccaggctggtgtgcggtggtgcaat

ctcagctcactgcaacctccgctgcctgtgttcaagcgattctcctgcctcagcttcccaagtagctgggattataggtgtgtgccactacatccagataatttttgtatttttagtagagaggggatttcaccatattggcccagatgatctcaatctcttgacctcatgatctgcccaccttggcctcccaaagtgctgggattacaggcgtgagccgccatccctggccCAGTTTTGCCTTTTTAACATCCCTCAGCTCTTCAAATCCATTTTCTcttctctaacacctccccattccccagctcgtaatgaactcgtaagtaaattactacaatcacctcccaaatggtcttcctggctccatcagccttgtgaccttcaagttcattttccacatggatgtcagagtaactttctaaaatgaaaatctgaccacgttactctcttgcctaaatccgcctatggccgctcttaggatcaagtctaaactcccgaccctggaacatcaggtcttcgtgctctgttcactgcttctctacctcacctgcaaccaACACCACTCCCACATCCATATGCTGCTCACCGTGTATCAACATGAACAGGAGGTGGGTGTTTCAGTCCCCAGGAAGACACTGGGCCTTTTCAATCATCTACTGCTTTGTAATAACCACCCCGCAAACTGACCACATGATTTCATTTTGCAAGGGTTCCTTCCTTgggctgtgttcagcaaaagggtttactgagctggcaggtccaagatggcctcactcacaggactggctgttgatgggagccttgatgctcttgggctcaccccttatcctccagtaggttagagcttcttacagtggtttcaggcagcatctgaagacagtaaaagcagaagctccaaggcttcttacattctagcctggaaaattacatcacattgcttccttcata-tttttttggcaaatcaggttgcaaggcttgcccagattag

ggtaaagaggcaaagaggctccttttcttttcttttcttttcttttttcttttttttttttttttgagtcagaatctcgctctgttgcccaggctggagtgcagtggtgcgatctaggctcactgcaagctctgcctcctgggttcacgccattctcctgcctcaggctcccaagtagctgagactacaggcacctaccaccacacccggctaa----ttttttttttttttttgtattttttagtagagactgtgtctcactgtgttagccaggatggtctccatctcctgacctcgtga

+s panTro2.chr1 223988426 2212 + 229974691
AGAAGGTAAACAGATGGGCAAATGATCTCTAAAGTCTCTCTGGCACTAACACAATTCTTTATTATGTGTTTTGTCTGGCTCTTTATATTGATAGCTGTTCCAGAGGCAATCAATACCTATTAGTCGGTTTTATTCTTATTTTTCTGTCTGACCTTACAGGGGAGCAAACTGAGGCAAAGCATGAACTTACTTCTCAGGAAATTAACCATTATGTTGGCAATCGCTGTGATTATTTGAACGGCAGCATCTGGACAAATTTAGTCACATGAAGTACAGAAGAGAGAGTTCTCATGGTTAAAACGAAGCTCTCTTTATTTGCTTCTGCTAATTAAAAAATCAGAGCTAAAGATACTTAAACACTACAGTTAAAATGCCATGGTTGTCTATTGGCTTAATGAATTCTCTTATGAAATCAACTCTAAAATGTTATCCATCATAAACCATGAAACACAATTTTTCTTATTCTCTTTAGAGCTTTACAATTCATCTTAAAGACCAGTGTTTACACTCTCTTCTGTAGGTTGTACAATAACCTTTGGCGAGAAAAAATAAAAGTCTGGCTTTCTGACTCATAGGTGTGTTCCCTTTAACAGAAAAAGAAAATATGTCCTCTTTAAAACTGATGATCATTGGTCACCTCAATTTTATTGAAGTTCACTTCTGACCTCTTTAGATGTAGTTGTCTACGTAAAACTGCCCAACAGAATTCTCTGTCTGAATGCCTTCTCCACAAACAAAATTTTAAGAACTAAAATCATCATCTTTCCTTCCAAATGTGCTCTCCCTATGTCCCCAGGGCTCTCCATGTGTAGAGCTGAGACCATTTGCCACTCAGTTTCCTCACCCAATTAATTGCAAGTCCCAACAAttttcc------------tttttttttttttttaaatggagtcttgctctgtcaccaggctggtgtgcggtggtgcaat

ctcagctcactgcaacctccgctgcctgggttcaagcgattctcctgcctcagcttcccaagtagctgggattataggtgtgtgccactacatccagataatttttgtatttttagtaaagaggggatttcaccatattggcccagatgatctcaatctcttgacctcatgatctgcccaccttggcctcccaaagtgctgggattacaggcatgagccaccatccctggccCACTTTTGCCTTTTTAACATCCCTCAGCTCTTCAAATCCATTTTCTcttctctaacacctccccattccccagctcgtaatgaactcttaagtagattactacaatcacctcccaaatggtcttcctggctccatcagccttgtgaccttcaagttcattctccacatggatgtcagagtaactttctaaaatgaaaatctgaccacgttactctcttgcctaaatctgcctatggccgctgttaggatcaagtctaaactcccgaccctggaacatcaggtcttcgtgctctgttcactgcttctctacctcacctgcaaccaacaccactcccacatccatattctgctcACCGTGTATCAACATGAACAGGAGGTGGGTGTTTCAGTCCCCAGGAAGACACTGGGCCTTTTCAATCATCTACTGCTGTGTAATAACCACCCCGCAAACTGACCACATGATTTCATTTTGCAAGGGTTCCTTCCTTgggctgtgttcagcaaaagggtttactgagctggcaggtccaagatggcctcattcacaggactggctgttgatgggagccttgatgctcttgggctcaccccttatcctccagtaggttagagcttcttacagtggtttcaggcagcatctgaagacagtaaaaacagaagctccaaggcttcttacattctagcctggaaaatcacatcacattgcttccttcatattttttttggcaaatcaggtttcaaggcttgcccagattag

ggt--------aaagaggctccttttcttttcttttcttttctt-----ttctttttttttgtttgagtcagaatctcgctctgttgcccaggctggagtgcagtggcacgatctaggctcactgcaagctctgcctcctgggttcacgccattctcctgcctcaggctcccaagtagctgagactacaggcacctgccaccacgcccggctaattttttttttttttttttttgtattttttagtagagactgtgtttcactgtgttagccaggatggtctccatctcctgacctcgtga

+
+a score=81076
+s hg18.chr1            231275 904 + 247249719
tccTTGCAAAGGGACATGCAGACCACATTAGTGAGAATATGTGCCTGTATTTTGCAATCTGTAACATGGGCATAAACTAAATGTTTTCCAAAGGGAATAGGGCAAAACAAAAAGGACCTTGACCACTCCTT-GGCCCTGAATAAATCCAGGAAGCCTAAGAGTATGACTATCCTGAGGTAGAAAGAGGGTCACATGCTGGATAAGAGGTACCTGGGCTCTCCACTTACAAGAAGAGAGCATGGTTACATTTATAATCACCATTCCCAACATGCTGTGAGTGCAGGCAGCTACCAGGAGGAGAACAAAGGAAATAACCAGGACACTCATCTCTAAACCTGTTAATTTAATCACACGGAACACTTCTATTTAAAATTCCCGAGAGTTAAGATGTAAGAATGCTTATCAAGGTAAATGCTGTTCACACTGCTTGGAGTGTCAGGCCTAGATCTCTATCCATCAGAaacaacaatatcaataacaacaacagcaacaTGATGATGGGGCAATTTCTTAAAAGCACCATGTATTTTATCGatacatgtccgttgcagaaaatccaggtgaatccaaagaagaaataaatgtcttccacaatcccatagcccagagctaactaACCACTATAAAGAACCCAGCGTGGTTTTAACTCATGGATCAAAAGATGCTCATCAAAGGCTCTGAGCTTTCCTGAGTGCTAACAGGAAACATCCAGCATCACTGGTCTCTCCAAGGCTGCAGGTGTCTTTGCCCATAGTGCCTGTTTTGTGTCAGGGAAAGAATCAACCTGGGAGCCAAGCCCAGGAATCAGGATGACCAAGACATACTGCACAAGGAGGGAACAAACCCATCCAAGGACACTCAAGGACAAATCAAGCAAATGAATTTAAGGGAGACGTGCTCATGG

+s panTro2.chr1_random 7327830 904 +   9420409
TCCTTGCAAAGGGACGTGCAGACCACATTAGTGAGAGTATGTGCCTGTATTTTGCAATCTGTAACATGGGCATAAACTAAATGTTTTCCAAAGGGAATAGGGCAAAACAAAAAGGACCTTGACCACTCCTTTGGTCCTGAATAAATCCAGGAAGCCTAAGAGTATGACTATCCTGAGGTAGAAAGAGGGTCACATGCTGGATAAGAGGTACCTGGGCTCTCCACTTACAAGAAGAGAGCATGGTTACATTTATAATCACCATTCCCAACATGCTGTGAGTGCAGGCAGCTACCAGGAGGAGAACAAAGGAAATAACCAGGACACCCATCTCTAAACCTGTTAATTTAATCACATGGAACACTTCTATTTAAAATTCCAGAGAGTTAAGATGTAAGAATGCTTATCAAGGTAAATGCTGTTCACACTGCTTGGAGTGTCAGGCCTAGATCTCTATCCATCAGAaacaacaatatcaataacaacaacagcaacaTGATGATGGGGCAATTTCTGAAAAGCACCATGTATTTTATCGATACATGTCCGTTGCAGAAAATCCAGGCGAATCCAAAGAAGAAATAAATGCCTTCCACAATCCCATAGCCCAGAGCTAACTAACCACTATAAAGAACCCAGCGTGGTTTTAACTAATGGATCAAAAGATGCTAATCAAAGGCTCTGAGCTTTCCTGAGTGCTAACAGGAAACATCCAGCATCACTGGTCCCTCCAAGGCTGCAGGTGTCTTTGCCCATAGTGCCTGTTTTGTGTCAGGGAAAGAATCCACCTGGGAGCCAAGTCCAGGAATCAGGATGACCAAGACATACTGGACAAGGAGGGAACAAAAGCATCC-AGGACACTTCAGGACAAATCATGCAAATGGATTTAAGGGAGACCTGCTCATGG

+
+a score=188515
+s hg18.chr1            232179 2073 + 247249719
TCTGCTTTGCTGCTCAGCATGGCTGGGAGGCACAGTGGAAGATCATGCATCCTGCCCCTGGGACTCCTCTGCCAGAGCCTGAGAGCTTTCTCCTGCCCACAGGCTAGGGGTAGGGCAGTTGGAATTGATCCATGCCTTCTAGCTAGACTGTGGGTCCCCTCAGTCTTGGGCATGGTGACAGCCCAGCATCAGACAGAGGTCAGTATCAAACTAGAAAATGTAATAAATACTGTCAGATTTGTAGACCCAAGAAAATATAAACTGCCAATCATGGAGGAAAAAAATCTCTCAATGATCTTATCTTTATATGATTCCCTTGCTGCCTGGAGATTGACATTTCCTTGGGGATAATCTGGTCATAGGATTGGTGAAGGTGGAAGGGAGGCAACCTCCAAAGGTGGGGCCCTCTGCTCACCTGGGACAGGGAGGGCCTGAGGTAGGTGTCTGTGTGGGCTGGGGAGGAGGATGGGAGCAGTGCTTCTAGATGTTTCCACTTTCTCCTCATTAGATAATAACGAATGGGTGATTTCCCTAGTCACTGCAGTGTGAGGAAATCTACAAAATTAATTTCACAATACACTTTACAGGATAGGTGGAGAAACACATGAAGCACAACTGCAGTGGGTTATAAAAAACGGCCTTTTGAGTTGAGCAATAAATTCGTTCAAGCAGCCATTCTGAAGGACAAAC-TGGCTCTGTATTTAAGAGGGGCATTCCAGCACTTCTCTAGCCACTGGGTTGACAATGACTCACCAAAGCCTCTGGTAGCCACCACAGGACACCCAGAGCATATGTTTTAAAGCTGAACACCAAACTGCGGACTTCGGGAGTAAGTGAACTGACTGGTTTTTATTTTGTTTTACTGCTTTTAACATTACAGTAACTGTTACAGGTTCCAGCAGGCTAACTGGGTGGAAATGAGTTTGGTTTCACTTAGTCTC

TCTAAAGAGAAAGCAAGTCGGTAGACTAATACCTAATAAAAGCAAAGCTGCCAACAATTGAAATTGCCTAGGCTGCTCTGTGTGTCCCACAtgcatgggtgtgggtgccagtgtgtgtgcgtgtgtgcatgcatgtgcatgtgtgtTGGGATAGAGTGGTAAGAAAATGGGAAATAATAAGAATGTTCAGTCCATAGCCCTTCATTATAAAAAGGTGAGCTGTAATAAATACTAGTGCCACATTTAGCCAAAACTTTACTCCAGCCAAAGGTGATATTTTCATGATAACATCCTGTGATTGCTTTGTTCTTCGTCTTGTATGTTCTTCCTAGATGGGCTCAGAACATACAAGAATTAAGTACACATCTTATTTTCCAGTGATAATGCTACCGGCAAATTCTGTTGTTTGTATAAACATCAGCCAAGTTTATATAACTAAACTAGTGTTTTGTTTTGTCAATTCAGCAAGAAATTAGACCAAATGGTGGCTTAATGCTGCATTGATTTGACTATCAATTTGTTTTCACTTTTCTGCAAAATAATTAATACATTATTAAATTGAGTTATGCTGATGCCACAGTTGTTCTTATCTCAAGTGTCTTAAAATTCATTTAATTTGTTTTTCCTTTGGTTTCATTATTCAGATTTTAACTTCAGTTCTCAAGATTTTATCTGATGGAAGAGATGGAGTCCATTACTAAGGACTCCATTGTGCTCCATCATGCCAGAGTTGTAAAATAGATCTTTTAAAGGAAATTTACTGTGATTTTTTTTCTATTTAAGAGCTTCCTCTCCAGTTGAGCATGTAAGAAAATTATACCAGGAGAATACAGTAAACTCTATGAGGCAAGCTATAAACATGTAGCATTGTGATTAGGGctggttctccttctagagatatggtaggattgcaatttcataccatccttgaagttagagagagccatgtgactcatttagccaatgaactgtgagcagaatgacatgtc

acttccagctgaagctttaaCAATCTGAGAGACATTCATACATTTTCCATGTGCTGTAGCCTTATACCCAAAGCCTGGGTCCCAAGTGACCATGACAGGCAGAGCTCCCTGGtgagccacagagatttagagaatggctgtta

+s panTro2.chr1_random 8588109 2072 +   9420409
TCTGCTTTGCTGCTCAGCATGGCTGGGAGGCACAGTGGAAGATCATGCATCCTGCCCCTGGGACTCCTCTGCCAGAGCCTGAGAGCTTTCTCCTGCCCACAGGCTAGGGGTAGGACAGTTGGAATTGATCCATGCCTTCTAGCTAGACTGTGGGTCCCCTCAGTCTTGGGCATGGTGACAGCCCAGCATCAGACAGAGGTCAGTATCAAACTAGAAAATTTAATAAATGCTGTCAGATTTGTAGACCCAAGAAAATATAAACTGCCAATCACGAAGGAAAAAAATCTCTCAATGATCTCATCTTTATATGATTCCCTTGCTGCCTGGAAATTGACATTTCCTTGGGGATAATCTGGTCATAGGATTGGTGAAGGTGGAAGGGAGGCAACCTCCGAAGGTGGGGCCCTCTGCTCACCTGGGACAGGGAGGGCCTGAGGTAGGTGTCTGTGTGGGCTGGGAAGGAGGATGGGAGCAGTGCTTCTAGATGTTTCCACTTTCTCCTCATTAGATAATAACGAATGGGTGATTTCCCTACTCACTGCAGTGTGAGGAAATCTACAAAATTAATTTCACAATACACTTTACAGGATAGGTGGAGAAACACATGAAGCACAACTGCAGTGGATTATAAAAAATGGCCTTTCGAGTTGAGCAATAAATTCGTTCAAGCAGCCATTCTGAAGGACAATCGTGGCTCTGTATTTAAGAGGGGCATTCCAGCACTTCTCTAGCCACTGGGTTGACAATGACTCACCAAAGCCTCTGGTAGCCACCACAGGACACCCAGAGCATATGTTTTAAAGCTGAACACCAAACTGCGGACTTCGGGAGTAAGTGAACTGACTGGTTTTTATTTTGTTTTACTGCTTTTAACATTACAGTAACTGTTACAGGTTCCAGCAGGCTAACTGGGTGGAAATGAGTTTGGTTTCACTTAGTCTC

TCTAAAGAGAAAGCAAGTCGGTAGACTAATACCTAATAAAAGCAAAGCTGCCAACAATTGAAATTGCCTGGGCTGCTCTGTGTGTCCCACAtgcatgggtgtgggtgccagtgtgtgtgcgtgtgtgcatgcatgtgcatgtgtgtTGGGATAGAGTGGTAAGAAAATGGGAAATAATAAGAATGTTCAGTCCATAGCCCTTCATTATAAAAAGGTGAGCTGTAATAAATACTAGTGCCACATTTAGCCAAAACTTTACTCCAGCCAAAGGTGATATTTTCATGATAACATCCTATGATTGCTTTATTCTTCGTCTTTTATGTTCTTCCTAGATGGGCTCAGAACATACAAGAATTAAGTACACATCTTATTTTCCAGTGATAATGCTACCGGCAAATTCTGTTGTTTGTATAAACATCAGCCATGTTTATATAACTAAACTAGTGTTTTGTTTTGTCAATTCAGCAAGAAATTAGACCAAATGGTGGCTTAATGCTGCATTGATTTGGCTATCCATTTCTTTTCACTTTTCTGCAAAATATTTAATACATTATTAAATTGAATTATGCTGATGCCACAGTTGTTCTTATCTCAATTGTCTTAAAATTCATTTAATTT-TTTTTCCTTTGGTTTCATTATTCAAATTTTAACTTCAGTTCTCAAGATTTTATCTGATGGAAGAGATGGAGTCCATTACTAAGGACTCCATTGTGCTCCATCATGCCAGAGTTGTAAAATAGATCTTTTAAAGGAAATTTACTGTGA-TTTTTTTCTATTTAAGAGCTTCCTCTCCAGTTGAGCATGTAAGAAAATTACACCAGGAGAATACAGTAAACTCTATGAGGCAAGCTATAAACATGCAGCATTGTGATTAGGGctggttctccttctagaaacacggtaggattgcaatttcataccatccttgaagttagagagagctacgtgactcatttagccaatgaactctgagcagaatgacatgtc

acttccagcagaagctttaagaatctgagagacattcatacgttttccatgtgctgtagccttatacccaaagcctgggtcccaagtgaccatgacaggcagagctccctgttgagccacagagatttacagaatgtctgtta

+
+a score=322739
+s hg18.chr1            234252 3582 + 247249719
acacagcataatccagcccatcctgactaatCTGATATTAACATGTATAATAAAGAATTCTATCAATGCTGAGGGAAGATGACTAGTTAAGGTCCTAGGTTGCAAGTCTCAAAACCTCTTCTAAGGATTGTAGACAGGAAATTAAATGACTTCTAGTCCCTAGAGTTCCCAATCTCCT--ACCATCC-CATCCTAATATGACAGAAGTAATTCCTGAGTTGCTTCTGAAACCAGAGCTTCCCTCAGAACCCTTAGCCTGCCAGATGGCTTCTTGGAGAGCCCTCACTCACTTTTCTCCTTCTGCTATTGCTGCTCATTCATTCCAGCTTTTAAAAATTCATCTTTATCCAGGAACCTCGCTTCTAGAAAAGTCATACAGGTGCTTCCAGGAGGCTACATGGGCACCCATATTTTTCTAGCCACTTTCATTAGACCAATGCAGCAGAGAAGAAAAGCCTCAATAATTATTATGACATGGCATGTTAGGATACCAAGTAAATTGCATTTGTAAAATGTGATTTTCTGTTGGTGTTCACTTCTGCTCTACTGACATTTGGTAAGTATTATTGACTGACTGACTAACTAATGTGGTCATTAGTCTTCATAAAGAAAGGCTCTCTACAAAAACGGAAGGATGCCCTTTTTCTGGCATTTAATACGTAAGAAATTGCCTCCAATAGAAACCAGAGTTGCCTGATTACTATCAGCACAGGAGAAATGTATTAATGTGCCTTTCTAGTAACAGGTTTTTAGAAAGTCAAATATAAACAAATCTGTCTATTTGTGTGTGTGCATGTGGTAGTGGGGAGGGAAGAAAAAAGGAGGGGGAGAGAAAGAGAAATAAGAACCAAGTTTATTATACTGTATTCAGGGGGAAAAAATTTTCCCAAGGTTCTAACAGAAGAGCAAAGTGCCACTGTCAATAGCCTCAGTAGTGTTAGA

GTTGCT------------tttatttatttatttatttatttatttatttttcctttttttt-ctttctctttttttcttcttttttttttcttttctttctttttttt----tttttttggacagagtctcacactgtcacctcggctggagtgcattggtgcaatctcgactcactgcaacttctgcctcccaggttcaagtgattctcctgcctcagccgcccaagtagctgggattacaggtgtctgccaccgtgcctagctaatttttttgtatttttagtagagatgaggtttcactatgttggccaggctggtctcaaactcctgacctcatgatccacccacgttggcctcccaaagtgctgggattacaggcgtgagccaccgcccctggccAGGATTGCTTTTACAGCCAGTCTTCAGGTGCCCACTGTAGGAACAATGTCATTTAACCCTCGGGATTATTCTGTGCCAAATATGGATAATGACTAATATCCAACACAGATATTCTCAGCTCAGAAGAGCAATTAGCAAATTCATAAATTAAGTGCTTGCTTCCTCTTTAGTCAAATACAAACGTTTGTTAAAAGATATTATTTTGCTTTACACTTTTTCTCTCAGAAATAAACAGATGCTTGAATTCCCACAGTGCTGCTTGAGCCTCACACCATGTCATCCTGCCAGGCACCCAGATCCAGTTCTAGAGTTTCACATGATCATGAgtgttggttaataagtcaatgcgaactgggaggggagatttttcaggagtgccacagggctctccctttaatcACATACACTCCCTGCTTTCATTGGAAAGTGTATAATGATGTCAGAGTGCCCCAGAATGGAGCTAGTTGGAAGACTGCCGTCATAGGGATGCCTTAGTGAATTAATAAGGTTTTAATTTCTGGCTCTCAACTTTGTAGATGTAAAAGTTGATTTATCAATATGTGAGAAAGGATGAATCTTTCTGAAGGTT

ATGTCATCACACTCACTAAGCACACAGAGAATAATGTCTAGAATCTGAGTGCCATGTTATCAAATTGTACTGAGACTCTTGCAGTCACACAGGCTGACATGTAAGCATCGCCATGCCTAGTACAGACTCTCCCTGCAGATGAAATTATATGGGATGCTAAATTATAATGAGAACAATGTTTGGTGAGCCAAAACTACAACAAGGGAAGCTAATTGGATGAATTTATAAAAATATGCCTCAGCCAAAATAGCTTAATTCACTCTCCCTTATCATAAGGATAATCTTGCCTAAAGGGACAGTAATATTAAAGACACTAGGAATAACCTCTGTACTTTGGACAGTAGACCTGCATAGCCCATTAGGCCTCAATGAAGTCTTATGCAAGACCAGAAGCCAATTTGCCA-TTTAAGGTGATTCTCCATGTTTCTGCTCTAACTGTGCTTCACAATACTCAAAACACTAAATCAGGATGTTTCCTGGAGTTCAGGGAGCTGTCCGTGTTACTGAGCAGTTCTCAGCAACACAAAGATCCTACTGACTCCTCATCAGACTTCTTTCTCACTGGAATTTTACACCTGGGCTGTTAACACCAGGCCAGGTCAAATTCAAAGGAGAGAAAAAAGCTCATTATGAAGGGTAAAATCCAAAACACTGTGCATAAAGATATGTGTGCACAATTTTTATACATAAAGATTTCATAAAACCAAAGCATCAGGAAATGAAAAGAGATACAGAAAGAAAAATGATGGTAAATGAGACATTAATTTACCCTTCTAATCTCTATCACAGCAAAAAGATAATTAAAAAATCTATATGAGGACCACAAAATACACAAAAATTATGTAGCAAAGCCTATAGCCTGAAAAAGTAAACATTGAAATTTGTATGTCCATAAAATGTTTACAAAATTCAGTACATATTACACACCCCACCCTAAAAACATCTAAGCAAAGTAGAGAATGTAGAAATGCTACAGATTATATTCTCT

GATTATGACACAACAAAACTAGAAATTACAGCATGGAAATTTAAAAGCTTTCTCTTAAATAATTCTGTGTCAAAAAGAAATCCAggccgggtacagtggctcatgcctgtaattccagtactttgggaggccaaggtgggcaggtcacttgaggtcagcagttcaagaccagcctcgtcaacatggcgacaccctgtctctactaaaaatacaaaaattagctgggcctggtggctcatgcctgtaatcccagctacttaggaggctgaggcaggagaattccttgaacccagaaggtggaggttgcagtgagctgagattgcaccactgcactccagcctaggtgacacagcaagactctgtc--aaaaaaaaaaaaagaaaTCCAAATAAAATTTCCAGAATATGTGGAAAATAGTGACAATAAAAATATTAcacatgtgtaatcccagcattttgagatgccaaggtggcaggatcacttgagaccaggagttcgcaaccagcctggacaacatagggagactccatctccacacatgccaaaaaaa-tttttaaatagccaggtatagtggtacttcttgtaatcccatctacttgggaggctaaggtgggagaatcacccaacctcaggagttcagggcttcagcaagccatgatcatatcactgcactccagcctcagca

+s panTro2.chr1_random 7330233 3600 +   9420409
ACACAGCATAATCCAGCCCATC-TGACTAATCTGATATCA-CATGTATAATAA-GAATTCTATCAATGCTGAGGGAAGATGATTAGTTAAGGTCGTAGGTTGCAAGTCTCAAAAC-TCTTCTAAAGGATGTAGACAGGAAATTAAATGACTTCTAGTCCCTAGAGTTCCCAATCTCCTTACCCATCCTCATCCTAATATGACAGAAGTAATTCGTGAGTTGCTTCTGAAACCAGAGCTTCCCTCGGAACGCTTAGCCTGCCAGATGGCTTCTTGGAGAGCTCTCACTCACTTTTCTCCTTCTGCTATTGCTGCTCATTCATTCCAGCTTTTAAAAATTCATCTTTATCCATGAACCTCGCTTCTAGAAAAGTCATACAGGTGCTTCCAGGAGGCTACATGGGCACCCATATTTTTCTAGCCACATTCATTAGACCAATGCAGCAGAGAAGAAAAGCCTCAATAATTATTATGACATGGCATGTTAGGATACCAAGTAAATTGCATTTGTAAAATGTGATTTTCTGTTGGTGTTCACTTCTGCTCTACTGACATTTGGTAAGTATTATTGACTGACTGACTAACTAATGTGGTCATTAGTCTTCATAAAGAAAGGCTCTCTACAAAAACGGAGGGATGCCCTTTTTCTGGCATTTAATACGTAAGAAATTGCCTCCGACAGAAACCAGAGTTGCCTGATTACTATCAGCACAGGAGAAATGTATTAATGTGCCTTTCTAGTAACAGGTTTTTAGAAAGTCTAATATAAACAAATCTGTCTATTTGTGTGTGTGCATGTGGTAGTGGGGAGGGAAGAAAAAAGGAGGGGGAGAGAAAGAGAAATAAGAACCAAGTTTATTATACTGTATTCAGGGGGAAAAAATTTTCCCAAGGTTCTAACAGAAGAGCAAAGTGCCACTGTCAATAGCCTCAGTAGTGTTAGG

GTTGCTtttatttatttatttatttatttatttatttatttatttatttttccttttttttcctttctctttttttcttc-tttttttttcttttctttctttttttttttctttttttggacagagtctcacactgtcgcctgggctggagtgcattggtgcaatcttgactcactgcaacctctgcctcccaggttcaagtgattctcctgcctcagcggcccaagtagctgggattacaggtgtctgccaccatgcctagctaatttttttgtatttttagtagagatgaggtttcactatgttgg-caggctggtctcaaactcctgacctcgtgatccacccaccttggcctcccaaagtgctgggattacaggcgtgagccaccgcccctggccAGGATTGCTTTTATAGCCAGTCTTCAGGTGCCCACTGTAGGAACAATGTCATTTAACCCTCGGGATTATTCTGTGCCAAATATGGATAATGACTAATATTCAACACAGATATTCTCAGCTCAGAAGAGCAATTAGCAAGTTCATAAATTAAGTGCTTGCTTCCTTTTTATTCAAATACAAACGTTTGTTAAAAGATATTATTTTGCTTTACACTTTTTCTCTCAGAAATAAACAGATGCTTGAATTCCCACAGTGCTGCTTGAGCCTCACACCATGTCATCCTGCCAGGCACCCAGATCCAGTTCTAGAGTTTCACATGATCATGAAtgttggttaataagtcaacgtgaactgggaggggagatttttcaggagggacacagggctctccctttaatcACATACACTCCCTGCTTTCATTGGAAAGTGTATAATGATGTCAGAGTGCCCCAGAATGGAGCTAGTTGGAAGACTGCCGTCATAGGGATGCCTTAGTGAATTAATAAGGTTTTAATTTCTGGCTCTCAACTTTGTAGATGTAAAAGTTGATTTATCAATATGTGAGAAAGGATGAATCTTTCTGAAGGTT

ATGTCATCACACTCACTAAGCACACAGAGAATAATGTCTAGAATCTGAGTGCCATGTTATCAAATTATACTGAGACTCTTGCAGTCACACGGGCTGACATGTAAGCATCGCCATGCCTAGTACAGACTCTCCCTGTGGATGAAATTATATGGGATGCTAAATTATAATCAGAACAATGTTTGGTGAGCCAAAACTACAACAAGGGAAGCTAATTGGATGAATTTATAAAAATATGCCTCAGCCAAAATAGCTTAATTCAGTCTCCCTTATCATAAGGATAATCTTGCCTAAAGGGACAGTAATATTAAAGACACTAGGAATAACCTCTGTACTTTGGACAGTAGACCTGCATAGCCCATTAGGCCTCAGTGAAGTCTTATGCAAGACCAGAAGCCAATTTGCCATTTTAAGGTGATTCTCCATGTTTCTGCTCTAACTGTGCTTCACAATACTCAAGACACTGAATCAGGATGTTTCCTGGAGTGCAGGGAGCTGTCCGTGTTACTGAGCAGTTCTCAGCAACACAAAGATCCTACTGACTCCTCATCAGACTTCTTTCTCACTGGAATTTTACACCTGGGCTGTTAACACCAGGCCAGGTCAAATTCAAAGGAGAGAAAAAAGCTCATTATGAAGGGTAAAATCCAAAACACTGTGCATAAAGATATGTGTGCACAATTTTTATACATAAAGATTTCATAAAGCCAAAGCATCAGGAAATGAAAAGAGATACAGAAAGAAAAATGATGGTAAATGAGACATTAATTTACCCTTCTAATCTCTATCACAGCAAAAAGATAATTAAAAAATCTATATGAGGACCACAAAATACACAAAAATTATGTAGAAAAGCCTATAGCCTGAAAAAGTATACATTGAAATTTGTGTGTCCATAAAATGTTTACAAAATTCAGTACATATTACACACCCCACCCTAAAAACATCTAAGCAAAGTAGAGAATGTAGAAATGCTACAGATTATATTCTCT

GATTATGACACAACAAAACTAGAAATTACAGCATGGAAATTTAAAAGCTTTCTCTTAAATAATTCTATGTCAAAAAGAAATCCAggccgggtacagtggctcatgcctgtaattccagtactttgggaggccaaggtgggcaggtcacttgaggtcaggagttcaagaccagcctcgtcaacatggcgacaccctgtctctactaaaaatacaaaaattagctgggcctagtggcgcatgcctgtaatcccagctacttaggaggctgaggcaggagaattccttgaacccagaaggtggaggttgcagtgagctgagattgcaccactgcactccagcctacgtgacacagcaagactctgtcaaaaaaaaaaaaaaagaaaTCCAAATAAAATTTCCAGAATATGTGGAAAATAGTGACAATAAAAATATTACACATGtgtaatcccagcattttgagatgccaaggtggcaggatcacttgagaccaggagttcgcaaccagcctggacaacatagggagactccatctccacacacgccaaaaaaattttttaaatagccaggtatagtggtacttcttgtaatcccatctacttgggaggctaaggtgggagaatcacccaacctcaggagttcagggcttcagcaagccatgatcatatcactgcactccagcctCAGCA

+
+a score=160185
+s hg18.chr1       237834 1775 + 247249719
acagagcaagatcctatctcaaaaaaaaaaaaaaaTCACATGTGGGAAATAGCTATAGCACAAtaaaaataaatgtattaagtatgaacaacaaaaaagctagtaaaggttgaacaacaactatccttaggaaagtggaaataatgtattaataaatatgaaagcaggctaggcatggtgactcacatctgtaatcccagcactttgggaggctgaggcaggcagatcacctgaggtcaggagttccagaccagcctggccaacatggtgaaatcttgtctctcctacaaatacaaaaactagccaggcttggttgtgcactcctgtaattcgagctacttgggaggctgaggcaggagaatctcttgaacctgagaggcagaggttgcagtgagccaagatcatgccactgcactccagctggggcaacagagtgacactccatctcaaaataaataaataagaaagcagaaactaataaattagaaaacagaaacatagaactaatttataaatcaaagcactatgccttgaaaagaGGGAGAAAAATTGTGAATTAAGGAAGGGAAGAGATGGTTGGAGAGGAGGTGGGAGAAGGCAGAGATAATTGAAGGAGCAAAAGCATCTGGAGAAGCAAAGCCACTGAAAGATGAACAGGGCTCTGAAAGAGATGCTTGATTGCTATCTTTTCAAATGACTGCAGTTCCCAGTGACATCATTTTTCTCCTCCCTGGAAGTCTGAGGGGCAGTTCACTTATCTCCTCCCCTCCCCTACTCCTCACCCCACACTCAAAACCTGTCTATGCTCCTTTCATTCTCATATGACAGATTTCAGATGGCAGTCTTATTTCCCTGATTTCTTTTTGAGATAGCTTGCATTTCCCTCCTCTATataaagccaccgtttatcaaatgcctacatggaccaagcagtccacaaaggcttc

acagacagttttactaaactcatgccaaaactttcaggttttatacctaccttatagataaagaaattgaagcttatagagtttaagtaatgttcccaaagcctcatggctagtaattcaaacctaatttctgcctactccaaagtctatttttccttatgatactatactgcctctcCAtggataaagacagagatcacatattaataaaatttgcacaaagtcggcaaattgttgaaagggaaggctaagatgattaataaaatcaagagccagatgatctcaacaacctgaaataactggctgacaaccaatttgaataactccctgcgggtgaagttcaaagtactattcgggttttttttttaaagtttggctgggtgcagcggctcacgcctgtaatccaagcacttagggaagccaaggtgggcagatcatgaagtcaggagttgaagaccagcccggtcaacatggtgaaaccccatttctactaaaaataaaaaattagccgggcctgctggtggatgcctgtagtcccagctactcgggaggctaaggcaggagaatcgcttgaacccaggaggtggaggttgcagggagccgagatcgcaccactgcactccagcctgggcgacagagcgagattccgtctcaaaaagtaaaataaaataaaataaaaaataaaagtttgatatattcagaatcagggaggtctgctgggtgcagttcatttgaaaaattcctcagcattttagtGATCTGTATGGTCCCTCtatctgtcagggtcctagcaggaaattgttgcactctcaaaggattaagcagaaa

+s panTro2.chr1 223998133 1767 + 229974691
acagagcaagatcctatctc--aaaaaaaaaaaaaTCACATGTGGGAAATAGCTATAGCACAAtaaaaataaatgtattaagtatgaacaacaaaaaaactagtaaaggttgaacaacaactatccttaggaaagtggaaataatgtattaataaatatgaaagaaggctaggcacggtgactcacatctgtaatcccagcactttgggaggctgaggcaggcagatcacctgaggtcaggagttccagaccagcctggccaacatggtgaaatcttgtctctcctacaaatacaaaaactagccaggcttggttgcacactcctgtaattccagctacttgggaggctgaggcaggagaatctcttgaacctgggaggcagaggttacagtgagccgagatcatgccactgcactccaactggggcaacagagtgacactccatctcaaaataaataaataagaaagcagaaactaataaattagaaaacagaaacatagaactaattcat-----aaagcactatgccttgaaaagaGGGAGAAAAATTGTGAATTAAGGAAGGGAAGAGATGGTTGGACAGGAGGTGGGAGAAGGCAGAGATAATTGAAGGAGCAAAAGCATCTGGAGAAGCAAAGCCACTGAAAGATGAACAGGGCTCTGAAAGAAATGCTTGATTGCTATCTTTTCAAATGACTGCAGTTCCCAGTGACATCATTTTTCTCCTCCCTGGAAGTCTGAGGGGCAGTTCACTTATCTCCTCCCCTCCCCTACTCCTCACCCCACACTCAAAACCTGTCTATGCTCCTTTCATTCTCATATGACAGATTTCAGATGGCATTCTTATTTCCCTGATTTCTTTTTGAGATAGCTTGCATTTCCCTCCTCTATataaagccaccgtttatcaaatgcctacatggaccaagcagtccaaaagggcttc

acagacagttttactaaactcatgccaaaactttcaggttttatacctaccttataggtaaagaaattgaagcttatagagtttaagtaatgtttccaaagcctcgtggctagtaattcaaacctaatttctgcctactccaaagtctatttttcctcatgatactatactgcctctcCAtggataaagacagagatcacatattaataaaatttgcacaaagtcagcaaattgttgaaagggaaggctaagatgattaataagatcaagagccagatgatctcaacaacctgaaataactggctgacaaccaatttgaataattccctgcgggtgaagttcaaagtactatttggg-gtttttcttaaagtttggctgggtgcagcggctcacgcctgtaatccaagcacttagggaagccaacgtaggcggatcatgaagtcaagagttgaagaccagcctggtcaacatggtgaaaccccgtctctactaaaaataaaaaattagccgggcgtgctggtggatgcctgtagtcccagctactcgggaggctaaggcaggagaatcgcttgaacccaggaggtggaggttgcagggagccaagatcgcaccactgcactccagcctgggcgacagagcgagattccgtctcaaaaaattaaataaaataaaataaaaaataaaagtttgatatattcagaatcagggaggtctgttgggtgcagttcatttgaaaaattcctcagcattttagtGATCTGTATGGTCCCTCtatctgtcacggtcctagcaggaaattgttgcactctcaaaggattaagcagaaa

+
+a score=600826
+s hg18.chr1            239609 6564 + 247249719
gagtttaatgaaggatctctttccagggttaagggaactgctagggtttggatatttgaccactccaaactcatgttgaaatgtgatccccattgttggaggtggggcctaatgggaggtgttttggtcctgagtgtggacctctcacgaatgtcttggtgccatccaagtgagttcttgctcgctcttttttttctttttgcgatgtagtttcactcttgctgcccaggttggaatgtagtggtgcgatcttggctcactgcaacatccacctcacgggttcaacccattctcctgtgtcagcctccagagtagctaggattacaggtgcccaccactatgcccagctaatttttggtatttttagtagagacggggtttcaccatgttggccaggctggtctcaaactcctgacctcaggtgatccacctgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgtgcctacctagttctagctctcttaattcccacaagagctggttgttaacaagagcctggcacaaacccctctctctcgccacgtgatctctgcacatgccagcttcccttccccttctgtcatgagtggaaacagcctaacgccctcaccagaagcaaatggtggcaccatgcttcttgcacaccttcagaactgtgagccaaataaacctctcttctttaaaattattcagcctctggtattcctttataacaacacacacacacacacacacacatacacacacac------------------gcaaaagcagactaaaacaggaactaattagaaatggtgatgcaccgagggattggcaCCGAGGCTCCCCAACAGGAACTGAGGTCATGGATAGAAGGACACATTCATGTTATTTTTTTCTAATGGTTAAGTAATTATTTGctcttactctcaaaattt

ctgccaaggcctcccatggaccaaactcaactagaatctaggaagcagagaacctgagtgttgcattcagcagaagtcagcttcctagggaatcttgcaggaagggtgaaggtagagaatctggtggggaagcaagcaaatgcccatcacaTGCACTTTCCTccaacagagcgactcagatgctataaaacttgctaacacagtctcagggtctgatcacagtaacatacaatccaggttttaatcatcagaaatcacagtcctattgtcttctgcacagacccaaacacacttggaggtcatgttcaatatgaatacctcacagagaaggaaatttacacgcgagaagtacatctgcagaaagccagctggcatgtcaaccattcaaaaactcagggtgttctggataaagaagactcaggaagacaagtatgaagcataatctgtgacattccatgcggcagacattagacatatacaagagagttgttggaaagcggaatttatcttcatataaacaacactgagctaaatctcaatatttcagatctctagaactatccatcagtgaaatggattgcaaatacaaagagtaataccatgtcacttaagaatacaatcatggacgaggctgccacctgctgttgggggccactgcagaagaaattccagaacactggactggagagcacctcactttccttacagctctaagtttctgACTCAGTGACCTGATTCACTACCATATACACAAAGACCCACTTACACAAATGACTGTTCTTCACACTAGGCCCATGGAGACAGGGATAAAATTCTGAATTTGCTCAGATACCTTCTCCGCTACTGACATCTAGGCATTACACAATTCATCTCTTCATATTTAACCTTTGAAGTTTGCTACTTCTCAGAGAGACTAATGAGTAGTGAGCAAATATCCTGAAGTTGAGAATGCTTCTACCTCCTCTCAAAACAACGGAATATTCATCAAA

ACACAACAGTTCTGCACTTAACTTTAGGCCTTTTCTAACACCTTGTTTCTTGGCAGTAACTGTGGCCAGAATAGCTCTTTCCACAGATAAAGGACCTTTTGAAAGGATAGGGTCTCTAGATAGAAAAGCAAATGCCTCATTCCAGAAGGTCTTCAAGAAGAAAATGTTGTGGTGATAACAAACATAACTGATTATAATCTATTCTGTGAAAAAAGCTTATGAAACAGTAGATGTGTGTATCTAGTACATAAGAGCTGAATGTCAATATATATATA--GATATATACacacactcaaataaataatagttatctctaactagagaaattctagttgccttatattttcttctttttccttactatattttctacaataaacatgtgtttttaacaagaaaaGTCTTTTCTGGTGTGCTTTTTAATTTTCTTTGTTTAAGTGAGAGTGAGGCTACATAACTACATGGCTAGGTAGACTTTTAGAAAACTTGACTGCTCTAGAAAATTGACATATCCTGATTTCTTCCATAGCTTGGATCTTGACCTAGAGGGAAATATAAAAGTGTTGACTTGAACCTGAGGGGTGCCATTTTCACTGCTGAAGTAGTTTCATGGATCATGAATTGGAGAAATGACTTCAGCAACATGGGTGTTAAAAACAGAAAGCACAAGTGACCCACAACAGATGATGGAGAACAAAGAGCAAGCTGGGAAA-GCAGTGGCCTTTAATACAGAAAAGAAGAAGTATAGCCACAATAAATATTAGGCAGACAGCAGTTCAGCAGTTTATACTATTAAGCTGTTGTTTAGGGGAATAGTAAACTGACATGACCCTTGAGGTAGGTATATATAGGTAAATTCTATGTGTCCCTTGAAATAGGTGTATGACACAACTTCTGGCATCTACATGGATTTGGTCACTCTAAAGTAGCCATGAGGCTTAAGATAGTTCAGCTGTTTGGGGATAAGTTAAATCATTTGCCATTGTCT

TTCTGCAATTTGCATATCCTACAGTTATCATTGCCATTACTGAATGGCACAGAGAAAAATTCTGGTCTAAAGTGGTTCTCAAACCTGGTTGCTGGAGGGccaccctcagtgatgatgatttaatctgtagaagagtagaacattgatagtttttatatatctccaggtaattttaatatataactggggtgagaatcattgACGTAATTGTAAGAGGATAATATTCAGGAAATATGGAGATAAATAATTTTCTTCTCGACATTAAAAAAATCTAATAAAAAGTTTTATCTTTTCCCCTAACTCAGGGTCATCAGCCTTCAAGCTTCAGTCTCTGTGTGTTCACAGGTGCTGTAAACACACGCATCACTACTAATATCCCACTTCAGTGCTATTGCTGCTCCCAAAACTCCAGGTATTTTTAACCTTATAAACCTCCAGAATAATGAGACCACTGGGTTCAGTAAATTGCTTTGTTTTGAAGCAGTATTAGACAAAGTGGGAGACTAGAAGATAAATCTGTCAATGACATGTCCTTTAAGACTACTTAGATTTTGTTGAATTTGTGGATCATTCCTTACTTGAGCAAATGGTAAATTAACTCTCTCTTTTCTCTCTCTCTCTAGCTGGCACACTTTTTCCAGTAGCCATTCTACTTGGTATGCTTACTTATCAGCTGTCCTCCAGGGGCCTCACATTAGATGTTTCTCT-GACTAACCAAACATGACACACAGCTGAAGTCAGAAAAACCAGATTGATAATTTCACTCAAACTATTTTCCTTCATTCTAACAATTTACTGGAGTACACAATTGTGACTATTTTTAGCCATAGGAACTCATAGAAAGACCAACTTCATTAGACCTACAAAATCGAATTGTGTAACAGTATATGCAGTATGTGTAGGAATAAAAAGCATTTCTCAAATATGCAGTACTGGATTTTGCAAAAGCACCTTACACTTAGCTATAAAGGAGTGGAAAACACAAAGA

TGAGTAACTGCACCTTTCAAAAGACTAGAGCTATACCAATAATACAAAGGTGTAAACAAATAATGATGAGATGACAAAGGCTGAGTGTTTTCTATTTGGAAGCTATGTTGTTGAGTTATTTATGTATATAATTTCATGCAATCTTCATGTTATGGGGATGTTctaatccactgtgactctgtccttaaataaaagggagatttggacatagagagaggcacacggggaggatgccatatgagaattgacactgtgctgtcacaagccaaggaactactggaaggagagaaagaggactggaacagttccttccttagcaccttttcaggcagcctagccctgccagcttcttgatctggacttctcacctctagaattgtgaggcaataaatctctgttgcttaagttacccagtttgtggtaccttattacaggagccctaggaaaataattcaTTATATAATctgctaaggtagatctgatcattgtctccaatttccatatgaagaaactatgcctcaggcattgtgtcagttgtccaaaatcatacattcctgactcacttcaatgaattcctcattcagcaaaatttttaaggtaccttaaaaaaattatgttaactcttaaggccttgctttaaagcttcaatgggcttttcctttgcaaagaataaaatcctaatacttaagcatagctctctttcctggctatgtttctgacatcctcttgtaccatgctcctccttaatcattctgaggttacatcttaagtcctttccccttgccattcccacttcttggaatactttcccatcaactcttcaaagaactgccttctttaagtatttggtctcagttcaaatgtcacttccctgtaaaagcttcctggccatcaagccttctttacacactctattttattttttcatggttcctataacaacctaatatattctcaattgattaactgttttgctgactactgccttc

cataagaatggaaagaaaacgtggccaggtgcagtggctcacacctgtaatcccaccacttcaggaggctgaggcaacatggcaaaaccttctcttcaaaaaattttttaaaagttagctggatgttgtggaggcaagaggatcacttgaggatcacttgagtccatgaggtcaaggctgcagtgagtcatgtttgcaccactgcactctagcctaggtgacagagctagtccctatcaaaaaaaaaaaaaaaaaaaaaagaatggagagaatgctacatgagagaaaggatcttatctatcacgttcacctcccaagaggtgaacatatcccccaaagcctgatagagagaagatgctcattaatatttaatgcatgaCCATGTGCAGACTTGGGAGGAAAAATATGCCTCAGCCTATCAATATTGGATCCTTAATAAACAAGGATGTTTCTGCATCATTTCCCCACAACACCGAACAAGTGTGGCTCACTGTGGATGTTTAAGCAAATGCATTGTTTTTCCAGTTATATATCTGGTAGAGATTAGGCCATTGATAGGAATGGGAAGACGATCTCCTTTTATTTTGATGACCCAGCATGGCTGAACACTCAGTGACTACCACTGCACTTTGTTGTACTTTCAGCATTAGAGATGCCAGCCCTGTAGGATATAAAACAGGAACATCTAGTCCTCAATTATATTCAGAATTACTCAAGTCTTAGAAGCACCACTTGTCTTTTTTCAAGGGAGAGAAATGCTCAAGTGATGGGCTGAAGTGAAGGGAGGGAGTCACTCACTTGAATGGTTCCCTTAGGCTGTGTGGATGCAAACAGCATTAGACAATGACACTGACAGTGGGAAATGCACTGGAGACGATGATTGGCAAAGCCCTCCTTTTCTCCCCATCCACTATAGATACTGACAGCAAAGGGTTTGTCACAATGACAACTATACACTCCCAATATCACAGAAGAAGGAGGAATAAAAG

GGTATATTATGAGTGACTGaaatttagaataaattaataaatattatGTCCCTCATCCATAGAAACCACAAAGGTCTAGTAAGGCTAAGGATATAACAAGAAAATAATATGAATATTTGCTTCCCCTTCCTAGTGTAATAGAGTAAGTTACAAATGGCTTCAGGAAGGGGAGAGAGGAAGAAGAGTGGATGAGATACGTAAGAGTGCTTGAGGGATAATTTTATGAAAGCTTTGGGAAGTTTTAAGAAAAAGAAAAGCTATTTTTCAAGGTACAtgtgtgtatgcgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgAAAGACAGAAGAAAGAGGGAGACCTAAGAAGACTATGAGACACTAAGAGAAAAATTAAGGTAAAAAAGACACACACTTAGAAAAACACACATAAGGAGGAGGGAGGAGGTTAAGACATTTTACTATGTGCTGTGAATGGAAACTACAAACCATTTTTGATatatgcaatatatatacatatatacacacatatacatatGTATTTAAATATTTAAATTACAttttctctttttttagagatatggtttcactatgtcactctgcccaggctgcagtacagtggttgttcacagtcatgatcatagcacattatagccttgaactcctgggctcaagcaaccctcctgtattagtctccccagtagttgggattactagcat

+s panTro2.chr1_random 7333834 6571 +   9420409
GAGTTTAATGAAGGGTCTCTTTCCAGGGTTAAGGGAACtgctagggtttggatatttgaccactccaaactcatgttgaaatgtgatccccattgttggaggtggggcctaatgggaggtgttttggtcctgagtgtggacctctcacgaatgtcttggtgccatccaagtgagttcttgctcgctcttttttttctttttgagatgtagtttcactcttgctgcccaggttggaatgtagtggtgcgatcttggctcactgcaacatccacctcatgggttcaacccattctcctgtgtcagcctccagagtagctaggattacaggtgcccaccactatgcccagctaatttttggtatttttagtagagatggggtttcaccatgttggccaggctggtctcaaactcctgacctcaggtgatccacctgcctcggcctcccaaagtgctgggattacaggcgtgagccaccgtgcctacctagttctagctctcttaattcccacaagagctggttgttaacaagagcctggcacaaacccctctctctcgccacgtgatctctgcacatgccagcttcccttccccttctgccatgagtggaaacagcctaaagccctcaccagaagcaaatggtggcaccatgcttcttgcacaccttcagaactgtgaaccaaataaacctctcttctttaaaattattcagcctctggtattcctttataacaacacacacacacacacacacacacacacacacacacacacacacacacatatgcaaaagcagactaaaacaGGAAATAATTAGAAATGGTGATGCAACGAGGGATTGGCACCGAGGCTCCCCAACAGGAACTGAGGTCATGGATAGAAGGACACATTCATGTTATTTTTTTCTAATGGTTAAGTAATTATTTGctcttactctcaaaattt

ctgccaaggcctcccatggaccaaactcaactagaatctaggaagcagagaacctgagtgttgcattcagcagaagtcagcttcctagggaatcttgcaggaagggtgaaggtagagaatctggtggggaagcaagcaaatgcccatcacaTGCACTTTCCTccaacagagcgactcagatgctataaaacttgctaacgcagtctcagggtctgatcacagtaacatacaatccaggttttaatcatcagaaatcacagtcctattgtcttctgcacagacccaaacacacttggaggtcatgttcaatatgaatacctcacagggaaggaaatttacacacgagaagtacatctgcagaaAGCCAGCTGGCATGTCAACCATTCAAAAATTCAGGGTGTTCGGGATAAAGAAGACTCAGGAAGACAAGTATGAAGCATAATCTGTGACATTCCATGCGGCAGACGTTAGACACATACAAGAGAGTTGTTGGAAAGCGGAATTTATCTTCATATAAACAACACTGAGCTAAATCTCAATACTTCAGATCTCTAGAACTATCCATCAGTGAAATGGAGGGCAAATAGAAAGAGTAATACCATGTAACTTAAGAATACAATCATGGACAAGGCTGCCACCTGCTGTTGGGGGCCACTGCAGAAGAAATTCCAGAACACTGGACTGGAGAGCACCTCACTTTCCTTACAGCTCTAAGTTTGTGACTCAGTGACCTGATTCAGTACCATATACACAAAGACCCACTTACACAAATGACTGTTCTTCACACTAGGCCCATGGAGACAGGGATAAAATTCTGAATTTGCTCAGATACCTTCTCCGCTACTGACATCTAGGCATTACACAATTCATCTCTTCATATTTAACCTTTGAAGTTTGCTACTTCTCAGAGAGACTAATGAGTAGTGAGCAAATATCCTGAAGCTGAGAATGCTTCTACCTCCTCTCAAAACAACGGAATATTCATCAAA

ACACAGCAGTTCTGCACTTAACTTTAGGCCTTTTCTTACACCTTGTTACTTGGCAGTAACTGTGGCCAGAATAGCTCTTTCCACAGATAAATGACCTTTTGAAAGGATAGGGTCTCTAGATAGAACAGCAAATGCCTCATTCCAGAAGGTCTTCAAGAAGAAAATGTTGTGGTGATAACAAACATAACTGATTATAATCTATTCTGTGAAAAAAGCTTATGAAACAGTAGATGTGTGTATCTAGTACATAAGAGCTGAATGTCAATATATATATATAGATATATACACACACTCAAATAAATAATAGTTATCTCTAACTAGAGAAATTCTAGTTGCCTTATATTTTCTTCTTTTTCCTTACTATATTTTCTACAATAAACATGTGTTTTTAACAAGAAAAGTCTTTTCTGGTGTGCTTTTTAATTTTCTTTGTTTAAGTGAGAGTGAGGCTACATAACTACATGGCTAGGTAGACTTTTAGAAAACTTGGCTGCTCTAGAAAATTGACATATCCTGATTTCTTCCATAGCTTGGATCTTGACCTAGAGGGAAATATAAAAATGTTGACTTGAACCTGAGGGGTGCCATTTTCACTGCTGAAGTAGTTACATGGATCATGAATTGGAGAAATGACTTCAGCAACACGGGTGTTAAAAACAGAAAGCACAAGTGACCCACAACAGATGATGGAGAACAAAGAGCAAGCTGGGAAAAGCAGTGGCCGTTAATACAGAAAAGAAGAAGTATAGCCACAATAAATATTAGGCAGACAGCAGTTCAGCAGTTTATACTATTAAGCTGTTGTTTAGGGGAATGGTAAACTGACATGACCCTTGAGGTAGGTATATATAGGTAAATTCTATGTGTCCCTTGAAATAGGTGTATGACACAACTTCTGGCGTCTACATGGATTTGGTCACTCTAAAGTAGCCATGAGGCTTAAGATAGTTCAGCTGTTTGGGGATAAGTTAAACCATTTGTCGTTGTCT

TTCTGCAATTTGCATATCCTACAGTTATCATTGCCATTACTGAATGGCACAGAGAAAAATTCTGGTCTAAAGTGGTTCTCAAACCTGGTTGCTGGAAGGccaccctcagtgatgatgatttaatctgtagaagagtagaacattgatagtttttatatatctccaggtaattttaatatataactggggtgagaatcattgACGTAATTGTAAGAGGATAATATTCAAGAAATGTGGAGATAAATAATTTTCTTCTCGACATTAAAAAAATCTAATAAAAAGTTTTATCTTTTCCCCTAACTCAGGGTCATCAGCCTTCAAGCTTCAGTCTCTGTGTGTTCACAGGTGCTGTAAACACACACATCATTACTAATATCCCACTTCAGTGCTATTGCTGCTCCCAAAACTCCAGGTATTTTTAACCTTATAAACCTCCAGAATAATGAGACCACTGGGTTCAGTAAATTGCTTTGTTTTGAAGCAGTATTAGACAAAGTGGGAGACTAGAAGATAAATCTGTCAATGACATGTCCTTTAAGACTACTTAGATTTTGTTGAATTTGTGGATCATTCCTTACTTGAGCAAATGGTAAATTAACTCTCTCTTTTCTCTCTCTCTCTAGCTGGCACACTTTTTCCAGTAGCCATTCTACTTGGTATGCTTACTTATCAGCTGTCCTCCACGGGCCTCACATTAGATGTTTCTCTTGACTAACCAAACATGACACACAGCTGAAGTCAGAAAAACCAGATTGATAATTTCACTCAAACTATTTTCCTTCATTCTAACAATTTACTGGAGTACACAATTGTGACTATTTTTAGCCATAGGAACTCATAGAAAGACCAACTTCATTAGACCTACAAAATTGAATTGTGTAACAGTATATGCAGTATGTGTAGGAATAAAAAGCATTTCTCAAATATGCAGTACTGGATTTTGCAAAAGCACCTTACACTTAGCTATAAAGGAGTGGAAAACACAAAGA

TGAGTAACTGCACCTTTCAAAAGACTAGAGCTATACCAATAATACAAAGGTGTAAACAAATAATGATGAGATGACAAAGGCTGAGTGTTTTCTATTTGGAAGTTACGTTGTTGAATTATTTATGTATATAATTTCGTGCAATCTTCATGTTATGGgggtgttctaatccactgtgactctgtccttaaataaaagggagatttggacatagagagaggcacacggggaggatgccatatgagaattgacactgtgctgtcacaagtcaaggaactactggaaggagagaaagaggactggaacagttccttccttagcaccttttcaggcagcctagccctgccagcttcttgatctggacttctcacctctagaattgtgaggcaataaatctctgttgcttaagttacccagtttgtggtactctattacaggagccctaggaaaataattcaTTATataatctgctaaggtagatatgatcattgtctccaatttccatatgaagaaactatgcctcaggcattgtgtcggttgtccaaaatcatacaTTCCTGACTCACTTCAATGAATTCTTCATTCAGCAAAATTTTTAAGGTACCTTTAAAAA-TTATGTTAACTCTTAGGTCCTTGCTTTAAAGCTTCAATGGGCTTTTCCTTTGCAAAGAATAAAATCCTAATACTTAAGCATAGCTCTCTTTCCTGGCTATGTTTCTGACATCCTCTTGTACCATGCTCCTCCTTAATCATTCTGAGGTTACATcttaagtcctttccccttgccattcccacttcttgggatactttcccatcaactcttcaaagaactggcttctttaagtatttggtctcagttcaaatgtcacttccctgtaaaagcttcctggccatcaagccttctttacacactctattttattttttcatggttcctataacaacctaatatattctcaattgattaactgttttgctgactactgccttc

cataagaatggaaagaaaacatggccagatgcagtggctcacacctgtaatcccaccacttcaggaggctgaggcaacatggcaaaaccttctcttcaaaaaattttttaaaagttagctggatgttgtggaggcaagaggatcacttgaggatcacttgagtccatgaggtcaaggctgcagtgagtcatgtttgcaccactgcactctagcctaggtgacagagctagtccctatcaaaaaaaaaaaaaaaaa-----gaatggagagaatgctacatgagagaaaggatcttatttatcatgttcacctcccaagaggtgaacatatcccccaaagcctgatagagagaagatgctcattaatatttaatgcatgaCCATGTGCAGACTTGGGAGGAAAAATATGCCTCAGCCTATCAAAATTGGATCCTTAATAAACAAGGATGCTTCTGTATCATTTCCCCACAACACCGAACAAGTGTGGCTCACTGTGGATGTTTAAGCAAATGCATTGTTTTTCCAGTTATATATCTGGTAGAGATGAGGCCATTGATAGGAATGGGAAGACGATCTCCTTTTATTTTGATGACCCAGCATGGCTGAACACTCAGTGACTACCACTGCACTTTGTTGTACTTTCAGCATTAGAGATGCCAGCCCTGTAGGATATAAAACAGGAACATCTAGTCCTCAATTATATTCAGAATTACTCAAGTCTTAGAAGCACAACCTGTCTTTTTTCAAGGGAGAGAAATGCTCAAGTGATGGGCTGAAGTGAAGGGAGGGAGTCACTCACTTAAACGGTTCCCTTAGGCTGTGTGGATGCCAACAGCATTAGACAATGACGCTGACAGTGGGAAATGCACTGGAGATGATGATTGGCAAAGCCCTCCTTTTCTCCCCATCCACTATAGATACTGACAGCAAAGGGTTTGTCACAATGACAACTATACACTCCCAATATCACAGAAGAAGGAGGAATAAAAG

GGTATATTATGAGTGACTGAAGTTTAGAATAAATTAATAAATATCATGTCCCTCATCCATAGAAACCACAAAGGTCTAGTAATGCTAAGGATATAACAAGAAAATAATATGAATATTTGCTTCCCCTTCCTAGTGTAATAGAGTAAGTTACAAATGGCTTCAGGAAGGGGAGAGAGGAAGAAGAGTGGATGAGATACGTAAGAGTGCCTGAGGGCTAATTTTATGAAAGCTTTGGGAAGTTTTAAGAAAAAGAAAAGCTATTTTTCAAGGTACAtgtgtgtatgcgtgcg--------tgtgtgtgtgtgtgtgtgtgAAAGACAGAAGAAAGAGGGAGACCTAAGAAGACTATGAGACACTAAGAGAAAAATTAAGGTAAAAAAGACACACACTTAGAAAAACACACATAGGGAGGAGGGAGGAGGTTAAGACATTTTACTATGTGCTGTGAATGGAAACTACAAACCATTTTTGATatatgcaatatatatacatatatacacacatatacatatGTATTTAAAGATTTAAATTACAttttctatttttttagagatatggtttcactatgtcactctgcccaggctgcagtacagtggttgttcacagtcatgatcatagcacattataaccttgaactcctgggctcaaggaatcctcctgtattagtctccccagtagct-ggattacTAGCAT

+
+a score=518950
+s hg18.chr1            246173 3827 + 247249719
atgccaccatgtccACCTTTATGCTTTTTAAAGTGAAAAACCATACTAAGAATGAGGCAGCTCAACTTAATAATAAAAACATTTCAAATGtaaagaaatttacaaaagaaaaacaatcaaccccattaaaattgggcaaagggaatgaacggacacttttcaaaagaatacatgcatgcagccaacaaacatacaaaaaaaaagttcaacatcactgatcattagagaaatgcaaatcaaaaccataatgagataccatttcacaccagtcagaatagctatcattaaaaagtcaaaaactaacagatgctagtgaggctatggagaaaagggaatgcttatacactgttgttgggtgtgcaaatcagttcaatcattgtgcaaggaa-agtgattcctcaaagagctaaaagcagagctaccattcgacccagtaatcccactactgggtatatacccagatgaatataaaccattctaccataaagacacatgcatacaaatgttcattgcagcactgttcacaatagcaaaagtatgggatcaacctaaatgcccatcaatgacagattggataaagaaaatgtggtacatatacaccatggaatactatgccgccattaaaaaatgatatcatgtcttttgctggaatatggatggaccttctattatccttagcaaactaatgcaggaacagaaaaccaaatacagcatactctcagttataagtgggagctaaatgatgagaactcatgaacacaaagaataaaacagacactggggtctacttgagggtggagggtgagaaacggaagagaaacagaaaagataactattgggtactaggtttaatacctgggtgatgaaatgatctgtacaataaccccctgtgacaccagtctacctatgtaacaaatgcccctaaacttaaaataaaagtta

aaaaaaaaAGAAAATTAAAATCTCCTTATCATCTACCTGGTAATATGAAAAACACATATCTTTCATtcattcctttcaactgatgaggaaactgaggcattgggagttagtaaAAGTCCACATTGAGATATGAGACCCACCACTggctggacacagtggctcacacctgtaatcccagcactttgggaggccgatgctggtggatcacctaaggtcaggagttcgggaccaggctggccaacatggtgaaacccccatctctactaaaaatacaaaaattagctgggtgtggtggctggcacctgtaataccagctactagggaggctgaggcaggagaatcgcttgaacccaggaggtggagtttacagtgagccaaaatcatgccattgcactccagcctgggcaacaagagcaagactctgtcggggaaaaaaaaaaacaaaaaaaaCCACCACCATCATTTTGCAAGTGTTACCACTATTGTGTGTTAATATTGTAGAAGTATTCCTAATTATGATTTCTTTGTATTCCTAATTGTAATAGCTTTGTATTTGAAAAATTATTGATTCATACTCTATATGTTATTATTTTGTATGCGATGACAACAGAATATATTATCATGCTCCTTTTGTGAATCTCATTCATAATATAAAGTATAAATTTGTGATTTTGCTTTAATTTGAAATATTAATTTCAAATATGTTATCACAATTTGATACAAACTATTGACAGTAAATCTGTGGATTAAGTAATGTCTTAGTAGGTATTGGGAAAATTTGAAACTAGTAACATGGAGGACTATTGTCATTGTTTATTTCAAAGCCAGTTAAAATTCTGCAAAGCAGTGTACATAAAAATAATTTCAAGAAATTTATAAAATACCGAGATTATGGTGTATAAACAACTTTAGATTCTTTGTTTAAGAAATACTGCCAGTTTGTAATATAtgcttcattcaaagtagctaagggctgtacctggctaata

gtaggcacctaatatttgttgaaaaggaatACTGAGTAGCTGGGACCTCCTGAGTAGCTGGGACCACACACATTTAACCTGTATTTATAAAATTACTGTTTAGAGAATAACATTTGATGGAatcatgcttttactttctgcttacgactcaattgtttgtactgacattaacatcccaaatccttagcatggcctacaaggccctgagcaatgtggcacctgctgaagcctgctgcctcatttaataactctttgtctctttcccagatccagccactctaacattttttagctcctggaccaagacaagctcttcccagaacctgagctttgtacctgttctttattcctggagtatttttcccctgacaaattacttatcatctatcataattcaggttaaatggcactaactcagggaaggcttccctaactgtctcccttctccaaccaaattaggaacaattatatggccacatagtatcgaatcaagtttataattttaaaataattgggagattttgttgtttaacacttgttttcactataagactgtaattacatgcaagtaagaaccatgcctgtttgttcactcctgccacagtcagaatagtgcctggaatatgcagtaagggctgaacaagcactaaataaatgaaCAAGTGAATAAATGGATATTGTCTCATTTTCAGAACAGAGTACTAAATGGATCATGAACACTATCTGGTATGTCACGTAGGTAATTTACAAGGGCTACAATTTCAGCTCAGATTTACCTTTTCCTGGATACAGGTCTTGATAGGTCTCTTGATGTCATTTCACTTCAGATTCTTCTTTAGAAAACTTGGACAATAGCATTTGCTGTCTTGTCCAAATTGTTACTAAGAATCAAGAGAGATATCTGACATGAAATGACATTGGAAAACATTAAACACGATTGAAATAATGCTAGCCAATATGGTTACTATTAGAAACCAATTACATTTTCA

ACTTAAAAATAGTAATACTTATTGCAGACTCAAATGTGCTTATTCTAAAACAAGTAAATGTTTGCCTATGGTCTGAGATTCTAATCCACGGAGTTCATTCTAATCCACATTCAACACTATCATGTACCAGTGGGCCTCATAACCCACCTAGCCCTGTGATTTTTCAGGTTCACTTTTCTAAACTTGTGAATTAAATATTTATTTTCTTAGTTCAGAAGAGGAAAAAAACTCTTGTAATTGTTGCCCATTTCAGGAGAAATCTTGCATATGAAAACAAGAGATAAATATACACAACTGAGGGCTGTGGTTTAAACAAAATCTTGAGAATGTTTTTTGACCTTATACATTTGTGCTTTAGTATAACAAAATGATATAGACAAAGGTAACTTTTAATAGAACCAGTCACTAAATTAAAAAAATGACAAATTCTTCTGCTTAGCTAAGCAACAGAGAAGGTAAAATACTAATTCAATTCATCAATTTAAGCAATACTCATTAAGAGCCAAGTATGTGCTTACTGAATAAGCTGCTAAGGTTTGGTGGTTACAGAGTGTGCGGTGAAATGATGTCTACATCACAGTCCAACATTCACAGAGTTTAAAAGCCTACCAAGAATCAAGACAGACACAAATACCTAACATAGACGTTTGTATATGATAAGAGAGCCAGAGTACAATTTAGGAGAAGAAATTGTATGGAAGGAAGGTTCATTTCCATTAGACCAGAAAAGACAGCACATTTGAAGGCCTGAATAAGAAATATTCTGGATAAGATATTGTggctgctaccagaatggctcttgatgatctctacctcttggtatttatacccttatataatctctttcctatagtgtaagctggtcccaggtacttgtttctattgaatagaatagaacaaaagaaatg

+s panTro2.chr1_random 7107868 3820 +   9420409
atgccaccatgtccACCTTTATGCTTTTTAAAGTGAAAAACCATACTAAGAATGAGGCAGCTCAACTTAATAATAAAAACATTTCGCATGtaaagaaatttacaaaagaaaaacaatcaaccccattaaaattgggcaaagggaatgaacagacacttttcaaaggaatacatgcatgcagccaacaaatatac-aaaaaaaagttcaacatcactgatcattagagaaatgcaaatcaaaaccataatgagataccatctcacaccagtcagaatagctatcattaaaaagtcaaaaaataacagatgctagtgagtctatggagaaaagggaatgcttatacactgttggtgggtgtgcaaatcagttcaatcattgtgcaaagaatagtgattcctcaaagagctaaaagcagagctaccattcgacccagtaatcccactactgggtatatacccagatgaatataaaccattctaccataaagacataggcatacaaatgttcattgcagcactgttcacaatagcaaaagtataggatcaacctaaatgcccatcaatgacagattggataaggaaaatgtggtacatatacaccatggaatactatgccgccattaaaaaatgatatcatgtcttttgctggaatat-gatggaccttctattatccttagcaaactaatacaggaacagaaaaccaaatacagcatactctcagttataagtgggagctaaatgatgagaactaatgaacacaaagaataaaacagacactggggtctacttgagggtggagggtgagaaaaggaagagaagcagaaaagataactattgggtactaggtttaatacctgggtgatgaaataatctgtacaataaccccctgtgacaccagtttacgtatgtaacaaatgcccctaaacttaaaataaaagtta

aaaaaaaaAGAAAATTAAAATCTCCTTATCATCTACCTGGTAATATGAAAAACACATATCTTTCATtcattcctttcaactgatgaggaaactgaggcatcgggagttagtaaAAGTCCACATTGAGATATGAGACCCACCACTggctggacgcagtggctcacacctgtaatcccagcactttgggaggccgatgctggtggatcacctaaggtcaggagttcgggaccaggctggccaacatggtgaaacccccatctcttctaaaaatacaaaaattagctgggtgtggtggcaggcacctgtaataccagctactagggaggctgaggcaggagaatcgcttgaacccaggaggtggagtttacagtgagccaaaatcacgccattgcactccagcctgggcaacaagagcaagactctgtcgggaaaagaaaaaaa-aaaaaaaaaCACCACCATCATTTTGCAAGTGTTACCACTATTGTGTGTTAATATTGTAGAAGTATTCCTAATTATGATTTCTTTGTATTCCTAATTGTAATAGCTTTGTACTTGAAAAATTATTGATTCATACTCTATATGTTATTATTTTATATGCGATGACAACAGAATATATTATCATGCTCCTTTTGTGAATCTCATTCATAATATAAAGTATAAATTTGTGATTTTGCTTTAATTTGAAATATTAATTTCAAATATGTTATCACAATTTGATACAAACTATTGACAGTAAATCTGTGGATTAAGTAATGTCTTAGTAGGTATTGGGAAAATTTGAAACTAGTAACATGGAGGACTATTGTCATTGTTTATTTCAAAGCCAGTTAAAATTCTGCAAAGCAGTGTAAATAAAAATAATTTCAAGAAATTTATAAAATACCGAGATTATGGTGTATAAACAACTTTAGATTCTTTGTTTAAGAAATTCTGCCAGTTTGTAATATAtgcttcattcaaagtagctaagggctgtacctggctaata

gtaggcacctaatatttgttgaaaaggaatACTGAGTAGCTGGGACCTCCTGAATAGCTGGGACCACACACATTTAACCTGTATTTATAAAATTGCTGTTTAGAGAATAACATTTGATGGAatcatgcttttactttctgcttatgactcaattgtttgtactgacattaacatcccaaatccttagcatggcctacaaggccctgagcaatgtggcacctgctgaagcctgctgcctcatttaataactctttgtctctttcccagatccagccactctaacattttttagttcctggaccaagacaagctcttcccagaacctgacctttgtacctgttctttattcctggagtatttttcccctgacaaattacttatcatctatcataaatcaggttaaatggcactaactcagggaaggcttccctaactgcctcccttctctaaccaaattaggaacaattatatggccacatagtatcgaatcaagtttataattttaaaataattgggagattttg----ttaacacttgttttcactataagactgtaattacatgcaagtaagaaccatgcctgtttgtttactcctgccacagtcagaatagtgcctggaatatgcagtaagggctgaacaaacactaaataaataaaCAAGTGAATAAATGGATATTGTCTCATTTTTAGAACAGAGTACTAAATGGATCATGAACACTATCTGGAATGTCACGTAGGTAATTTACAAGGGCTACAATTTCAGCTCAGATTTACCTTTTCCTGGATACAGGTcttgataggtctcttgatgtcatttcacttcagattcttctttagaaaacttggacaatagcatttgctgtcttgtccaaattgttactaagaatcaaaagagatatctgacatgaaatgacattggaaaacattaaacacgattgaaataatgctagccaatatggttatTATTAGAAACCAATTACATTTTCA

ACTTAAAAATAGTAATACTTATTGCAGACTCAAATGTGCTCATTCTAAAACAAGTAAATGTTTGCCTGTGGTCTGAGATTCTAATCCACGGAGTTCATTCTAATCCACATTCAACACTATCATGTACCAGTGGGCCTCATAACCCACCTAGCCCTGTGATTTTTCAGGTTCACTTTTCTAAACTTGTGAAGTAAATATTTATTTTCTTAGTTCAGAAGAGGAAAAAAACTCTTGTAATTTTTGCCCATTTCAGGAGAAATCTTGCATATGAAAACAAGAGATAAATATACACAACTGAGGGCTGTGGTTTAAACAAAATCTTGAGAAT-TTTTTTGACCTTATACATTTGTGCTTTAGTATAACAAAATGATATAGACAAAGGTAACTTTTAATAGAACCAGTCACTAAATTAAAAAAATGACAAATTCTTCTGCTTAGCTAAGCAACAGAGAAGGTAAAATACTAATTCAATTCATCAATTTAAGCAATACTCATTAAGAGCCAAGTATGTGCTTACTGAATAAGCTGCTAAGGTTTGGTGGTTACAGAGTGTGCGGTGAAATGATGTCTACATCACAGTCCAACATTCACAGAGTTTAAAAGCCTACCAAGAATCAAGACAGACACAAATACCTAACATAGACGTTTGTATGTGATAAGAGAGCCACAGTACAATTTAGGAGAAGAAATTGTATGGAAGGAAGGTTCATTTCCATTAGACCAGAAAAGACAGCACATTTGAAGGCCTGAATAAGAAATATTCTGGATAAGATATtgtggctgccaccagaatgactcttgatgatctctacctcttggtatttatacccttatataatctctttcctatagtataagctggtcccaggtacttgtttctattgaatagaatcgaacaaaagtaatg

+
diff -r 447c74d98fe5 -r ad3f61801a82 test-data/ortho_ms.tab
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/ortho_ms.tab	Wed Sep 24 18:20:39 2008 -0400
@@ -0,0 +1,106 @@
+#Block	Seq1_Name	Seq1_Start	Seq1_End	Seq1_Type	Seq1_Length	Seq1_RepeatNumber	Seq1_Unit	Seq2_Name	Seq2_Start	Seq2_End	Seq2_Type	Seq2_Length	Seq2_RepeatNumber	Seq2_Unit
+5	hg18.chr1	6483	6496	trinucleotide	13	4	GCT	panTro2.chr15	100042575	100042588	trinucleotide	13	4	GCT
+10	hg18.chr1	16317	16329	dinucleotide	12	6	GT	panTro2.chr15	100035910	100035921	dinucleotide	11	5	TG
+10	hg18.chr1	18452	18467	mononucleotide	15	15	T	panTro2.chr15	100038029	100038042	mononucleotide	13	13	T
+12	hg18.chr1	20736	20756	dinucleotide	20	10	TC	panTro2.chr15_random	1091184	1091198	dinucleotide	14	7	TC
+13	hg18.chr1	20774	20786	dinucleotide	12	6	TC	panTro2.chrUn	1510792	1510803	dinucleotide	11	5	TC
+13	hg18.chr1	20799	20812	dinucleotide	13	6	TC	panTro2.chrUn	1510811	1510831	dinucleotide	20	10	TC
+13	hg18.chr1	20774	20786	dinucleotide	12	6	TC	panTro2.chrUn	1510792	1510803	dinucleotide	11	5	TC
+13	hg18.chr1	20799	20812	dinucleotide	13	6	TC	panTro2.chrUn	1510811	1510831	dinucleotide	20	10	TC
+14	hg18.chr1	23313	23328	mononucleotide	15	15	A	panTro2.chrUn	1508926	1508942	mononucleotide	16	16	A
+14	hg18.chr1	23384	23405	mononucleotide	21	21	T	panTro2.chrUn	1508999	1509025	mononucleotide	26	26	T
+15	hg18.chr1	25352	25371	tetranucleotide	19	4	AAAT	panTro2.chr15_random	1087905	1087924	tetranucleotide	19	4	AAAT
+16	hg18.chr1	26215	26228	mononucleotide	13	13	A	panTro2.chrUn	135175	135189	mononucleotide	14	14	A
+16	hg18.chr1	30483	30495	trinucleotide	12	4	TTC	panTro2.chrUn	139435	139447	trinucleotide	12	4	TTC
+16	hg18.chr1	30503	30522	mononucleotide	19	19	T	panTro2.chrUn	139457	139482	mononucleotide	25	25	T
+17	hg18.chr1	33660	33676	mononucleotide	16	16	A	panTro2.chrUn	9698149	9698162	mononucleotide	13	13	A
+17	hg18.chr1	34037	34047	mononucleotide	10	10	A	panTro2.chrUn	9698527	9698537	mononucleotide	10	10	A
+19	hg18.chr1	37182	37192	mononucleotide	10	10	A	panTro2.chrUn	9701917	9701928	mononucleotide	11	11	A
+19	hg18.chr1	40345	40377	dinucleotide	32	16	GT	panTro2.chrUn	9705094	9705126	dinucleotide	32	16	GT
+19	hg18.chr1	41728	41741	mononucleotide	13	13	A	panTro2.chrUn	9706479	9706495	mononucleotide	16	16	A
+20	hg18.chr1	44576	44638	tetranucleotide	62	15	TTTC	panTro2.chrUn	9709825	9709899	tetranucleotide	74	18	TTTC
+20	hg18.chr1	44654	44681	tetranucleotide	27	6	TTTC	panTro2.chrUn	9709915	9709942	tetranucleotide	27	6	TTTC
+22	hg18.chr1	51726	51744	mononucleotide	18	18	T	panTro2.chrUn	9717633	9717652	mononucleotide	19	19	T
+22	hg18.chr1	52103	52120	dinucleotide	17	8	AC	panTro2.chrUn	9718011	9718024	dinucleotide	13	6	AC
+25	hg18.chr1	61983	61995	dinucleotide	12	6	TA	panTro2.chrUn	9729161	9729173	dinucleotide	12	6	TA
+25	hg18.chr1	62004	62027	tetranucleotide	23	5	ATAC	panTro2.chrUn	9729184	9729219	tetranucleotide	35	8	ATAC
+25	hg18.chr1	63706	63720	mononucleotide	14	14	T	panTro2.chrUn	9730896	9730914	mononucleotide	18	18	T
+26	hg18.chr1	67038	67059	mononucleotide	21	21	A	panTro2.chrUn	9734760	9734777	mononucleotide	17	17	A
+27	hg18.chr1	72077	72088	dinucleotide	11	5	AC	panTro2.chrUn	9742946	9742957	dinucleotide	11	5	AC
+28	hg18.chr1	73838	73906	tetranucleotide	68	17	AAAG	panTro2.chr15	99975357	99975380	tetranucleotide	23	5	AAAG
+28	hg18.chr1	73838	73906	tetranucleotide	68	17	AAAG	panTro2.chr15	99975357	99975380	tetranucleotide	23	5	AAAG
+32	hg18.chr1	81064	81077	mononucleotide	13	13	A	panTro2.chrUn	1797471	1797489	mononucleotide	18	18	A
+35	hg18.chr1	82527	82541	mononucleotide	14	14	A	panTro2.chr1_random	7070707	7070721	mononucleotide	14	14	A
+40	hg18.chr1	91199	91212	mononucleotide	13	13	A	panTro2.chr1_random	7089889	7089900	mononucleotide	11	11	A
+41	hg18.chr1	91538	91554	mononucleotide	16	16	A	panTro2.chr1	223998154	223998167	mononucleotide	13	13	A
+42	hg18.chr1	94024	94060	dinucleotide	36	18	AC	panTro2.chr1_random	7090945	7090970	dinucleotide	25	12	AC
+42	hg18.chr1	95472	95491	dinucleotide	19	9	AT	panTro2.chr1_random	7092383	7092404	dinucleotide	21	10	AT
+43	hg18.chr1	96802	96815	dinucleotide	13	6	TC	panTro2.chr1	243988	244001	dinucleotide	13	6	TC
+44	hg18.chr1	98409	98425	mononucleotide	16	16	A	panTro2.chr1_random	7095323	7095342	mononucleotide	19	19	A
+45	hg18.chr1	99439	99478	dinucleotide	39	19	GT	panTro2.chr1	246661	246696	dinucleotide	35	17	GT
+45	hg18.chr1	100799	100809	mononucleotide	10	10	A	panTro2.chr1	248017	248028	mononucleotide	11	11	A
+45	hg18.chr1	101230	101250	mononucleotide	20	20	A	panTro2.chr1	248453	248467	mononucleotide	14	14	A
+49	hg18.chr1	111133	111148	mononucleotide	15	15	T	panTro2.chr1	260455	260473	mononucleotide	18	18	T
+49	hg18.chr1	111503	111515	trinucleotide	12	4	TAA	panTro2.chr1	260828	260846	trinucleotide	18	6	TAA
+49	hg18.chr1	112927	112938	dinucleotide	11	5	CA	panTro2.chr1	262255	262267	dinucleotide	12	6	AC
+49	hg18.chr1	112974	112995	dinucleotide	21	10	TA	panTro2.chr1	262299	262320	dinucleotide	21	10	TA
+55	hg18.chr1	114709	114728	mononucleotide	19	19	A	panTro2.chr1	262958	262973	mononucleotide	15	15	A
+55	hg18.chr1	114709	114728	mononucleotide	19	19	A	panTro2.chr1	262958	262973	mononucleotide	15	15	A
+56	hg18.chr1	118460	118475	mononucleotide	15	15	T	panTro2.chr1	267602	267617	mononucleotide	15	15	T
+56	hg18.chr1	119541	119556	mononucleotide	15	15	T	panTro2.chr1	268682	268695	mononucleotide	13	13	T
+56	hg18.chr1	120154	120164	mononucleotide	10	10	A	panTro2.chr1	269287	269300	mononucleotide	13	13	A
+56	hg18.chr1	123929	123958	mononucleotide	29	29	T	panTro2.chr1	273095	273130	mononucleotide	35	35	T
+56	hg18.chr1	118460	118475	mononucleotide	15	15	T	panTro2.chr1	267602	267617	mononucleotide	15	15	T
+56	hg18.chr1	119541	119556	mononucleotide	15	15	T	panTro2.chr1	268682	268695	mononucleotide	13	13	T
+56	hg18.chr1	120154	120164	mononucleotide	10	10	A	panTro2.chr1	269287	269300	mononucleotide	13	13	A
+72	hg18.chr1	131317	131331	trinucleotide	14	4	TTA	panTro2.chr1_random	7185786	7185800	trinucleotide	14	4	TTA
+72	hg18.chr1	134751	134763	mononucleotide	12	12	A	panTro2.chr1_random	7189181	7189197	mononucleotide	16	16	A
+72	hg18.chr1	134994	135006	trinucleotide	12	4	GTG	panTro2.chr1_random	7189427	7189439	trinucleotide	12	4	GTG
+72	hg18.chr1	136901	136911	mononucleotide	10	10	A	panTro2.chr1_random	7191338	7191350	mononucleotide	12	12	A
+72	hg18.chr1	137298	137339	trinucleotide	41	13	AAC	panTro2.chr1_random	7191741	7191782	trinucleotide	41	13	AAC
+72	hg18.chr1	137771	137781	mononucleotide	10	10	A	panTro2.chr1_random	7192213	7192224	mononucleotide	11	11	A
+72	hg18.chr1	138639	138652	trinucleotide	13	4	AAT	panTro2.chr1_random	7193082	7193095	trinucleotide	13	4	AAT
+72	hg18.chr1	139543	139563	mononucleotide	20	20	A	panTro2.chr1_random	7193986	7194009	mononucleotide	23	23	A
+72	hg18.chr1	141348	141361	mononucleotide	13	13	T	panTro2.chr1_random	7195790	7195814	mononucleotide	24	24	T
+73	hg18.chr1	145718	145733	mononucleotide	15	15	A	panTro2.chr1_random	7202121	7202135	mononucleotide	14	14	A
+74	hg18.chr1	146143	146155	mononucleotide	12	12	T	panTro2.chr1_random	7208622	7208632	mononucleotide	10	10	T
+74	hg18.chr1	146971	146985	mononucleotide	14	14	A	panTro2.chr1_random	7209449	7209463	mononucleotide	14	14	A
+75	hg18.chr1	148861	148895	dinucleotide	34	17	AC	panTro2.chr1_random	7211571	7211605	dinucleotide	34	17	AC
+75	hg18.chr1	150335	150351	mononucleotide	16	16	T	panTro2.chr1_random	7213029	7213047	mononucleotide	18	18	T
+75	hg18.chr1	152174	152208	tetranucleotide	34	8	GGAG	panTro2.chr1_random	7214870	7214904	tetranucleotide	34	8	GGAG
+75	hg18.chr1	153993	154017	pentanucleotide	24	4	AAAAC	panTro2.chr1_random	7216686	7216711	pentanucleotide	25	5	AAAAC
+75	hg18.chr1	155151	155174	mononucleotide	23	23	A	panTro2.chr1_random	7217843	7217867	mononucleotide	24	24	A
+75	hg18.chr1	156998	157017	tetranucleotide	19	4	TTTA	panTro2.chr1_random	7219691	7219710	tetranucleotide	19	4	TTTA
+75	hg18.chr1	148861	148895	dinucleotide	34	17	AC	panTro2.chr1_random	7211571	7211605	dinucleotide	34	17	AC
+75	hg18.chr1	152174	152208	tetranucleotide	34	8	GGAG	panTro2.chr1_random	7214870	7214904	tetranucleotide	34	8	GGAG
+75	hg18.chr1	153993	154017	pentanucleotide	24	4	AAAAC	panTro2.chr1_random	7216686	7216711	pentanucleotide	25	5	AAAAC
+75	hg18.chr1	154537	154559	mononucleotide	22	22	A	panTro2.chr1_random	7217231	7217251	mononucleotide	20	20	A
+75	hg18.chr1	156998	157017	tetranucleotide	19	4	TTTA	panTro2.chr1_random	7219691	7219710	tetranucleotide	19	4	TTTA
+76	hg18.chr1	159723	159736	mononucleotide	13	13	T	panTro2.chr1	224074251	224074269	mononucleotide	18	18	T
+76	hg18.chr1	160798	160818	pentanucleotide	20	4	GTTTT	panTro2.chr1	224075335	224075355	pentanucleotide	20	4	GTTTT
+77	hg18.chr1	164907	164918	dinucleotide	11	5	CA	panTro2.chr1_random	7295345	7295356	dinucleotide	11	5	CA
+77	hg18.chr1	165310	165322	mononucleotide	12	12	A	panTro2.chr1_random	7295748	7295770	mononucleotide	22	22	A
+77	hg18.chr1	164907	164918	dinucleotide	11	5	CA	panTro2.chr1_random	7295345	7295356	dinucleotide	11	5	CA
+77	hg18.chr1	165310	165322	mononucleotide	12	12	A	panTro2.chr1_random	7295748	7295770	mononucleotide	22	22	A
+78	hg18.chr1	166066	166095	pentanucleotide	29	5	AAAAC	panTro2.chr1	224080667	224080691	pentanucleotide	24	4	AAAAC
+83	hg18.chr1	219668	219689	tetranucleotide	21	5	TAAA	panTro2.chr3	77587413	77587435	tetranucleotide	22	5	TAAA
+87	hg18.chr1	222298	222309	mononucleotide	11	11	T	panTro2.chrUn	1781936	1781946	mononucleotide	10	10	T
+87	hg18.chr1	222298	222309	mononucleotide	11	11	T	panTro2.chrUn	1781936	1781946	mononucleotide	10	10	T
+93	hg18.chr1	227392	227408	mononucleotide	16	16	A	panTro2.chr1_random	7325593	7325616	mononucleotide	23	23	A
+93	hg18.chr1	228854	228869	mononucleotide	15	15	A	panTro2.chr1_random	7327066	7327078	mononucleotide	12	12	A
+94	hg18.chr1	231193	231209	mononucleotide	16	16	T	panTro2.chr1	223990552	223990572	mononucleotide	20	20	T
+97	hg18.chr1	235198	235229	tetranucleotide	31	7	TTTA	panTro2.chr1_random	7331178	7331221	tetranucleotide	43	10	TTTA
+97	hg18.chr1	235279	235294	mononucleotide	15	15	T	panTro2.chr1_random	7331271	7331290	mononucleotide	19	19	T
+97	hg18.chr1	237516	237529	mononucleotide	13	13	A	panTro2.chr1_random	7333512	7333527	mononucleotide	15	15	A
+98	hg18.chr1	237855	237870	mononucleotide	15	15	A	panTro2.chr1	223998154	223998167	mononucleotide	13	13	A
+99	hg18.chr1	240341	240375	dinucleotide	34	17	AC	panTro2.chr1_random	7334566	7334615	dinucleotide	49	24	AC
+99	hg18.chr1	241787	241806	dinucleotide	19	9	AT	panTro2.chr1_random	7336030	7336051	dinucleotide	21	10	AT
+99	hg18.chr1	243117	243130	dinucleotide	13	6	TC	panTro2.chr1_random	7337363	7337376	dinucleotide	13	6	TC
+99	hg18.chr1	244724	244746	mononucleotide	22	22	A	panTro2.chr1_random	7338970	7338987	mononucleotide	17	17	A
+99	hg18.chr1	240341	240375	dinucleotide	34	17	AC	panTro2.chr1_random	7334566	7334615	dinucleotide	49	24	AC
+99	hg18.chr1	241787	241806	dinucleotide	19	9	AT	panTro2.chr1_random	7336030	7336051	dinucleotide	21	10	AT
+99	hg18.chr1	243117	243130	dinucleotide	13	6	TC	panTro2.chr1_random	7337363	7337376	dinucleotide	13	6	TC
+99	hg18.chr1	244724	244746	mononucleotide	22	22	A	panTro2.chr1_random	7338970	7338987	mononucleotide	17	17	A
+99	hg18.chr1	245760	245793	dinucleotide	33	16	GT	panTro2.chr1_random	7340006	7340026	dinucleotide	20	10	TG
+100	hg18.chr1	247114	247124	mononucleotide	10	10	A	panTro2.chr1_random	7108808	7108818	mononucleotide	10	10	A
+100	hg18.chr1	247545	247565	mononucleotide	20	20	A	panTro2.chr1_random	7109243	7109259	mononucleotide	16	16	A
diff -r 447c74d98fe5 -r ad3f61801a82 test-data/ortho_ms_mut.tab
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/ortho_ms_mut.tab	Wed Sep 24 18:20:39 2008 -0400
@@ -0,0 +1,75 @@
+#Window	Species_1	Window_Start	Window_End	Species_2	Groupby_Feature	SubGroupby_Feature	Mutability	Count
+5	hg18.chr1	6483	6496	panTro2.chr15	100042575	100042588	trinucleotide	GCT	0.00e+00	4
+10	hg18.chr1	18452	18467	panTro2.chr15	100038029	100038042	mononucleotide	T	4.00e+00	13
+10	hg18.chr1	18452	18467	panTro2.chr15	100038029	100038042	dinucleotide	GT	1.00e+00	5
+12	hg18.chr1	20736	20756	panTro2.chr15_random	1091184	1091198	dinucleotide	TC	9.00e+00	7
+13	hg18.chr1	20799	20812	panTro2.chrUn	1510811	1510831	dinucleotide	TC	1.10e+01	24
+14	hg18.chr1	23384	23405	panTro2.chrUn	1508999	1509025	mononucleotide	A	1.00e+00	15
+14	hg18.chr1	23384	23405	panTro2.chrUn	1508999	1509025	mononucleotide	T	1.30e+01	36
+15	hg18.chr1	25352	25371	panTro2.chr15_random	1087905	1087924	tetranucleotide	AAAT	0.00e+00	4
+16	hg18.chr1	30503	30522	panTro2.chrUn	139457	139482	trinucleotide	TTC	0.00e+00	4
+16	hg18.chr1	30503	30522	panTro2.chrUn	139457	139482	mononucleotide	A	1.00e+00	13
+16	hg18.chr1	30503	30522	panTro2.chrUn	139457	139482	mononucleotide	T	1.85e+01	32
+17	hg18.chr1	34037	34047	panTro2.chrUn	9698527	9698537	mononucleotide	A	4.50e+00	23
+19	hg18.chr1	41728	41741	panTro2.chrUn	9706479	9706495	mononucleotide	A	5.00e+00	23
+19	hg18.chr1	41728	41741	panTro2.chrUn	9706479	9706495	dinucleotide	GT	0.00e+00	16
+20	hg18.chr1	44654	44681	panTro2.chrUn	9709915	9709942	tetranucleotide	TTTC	4.50e+00	21
+22	hg18.chr1	52103	52120	panTro2.chrUn	9718011	9718024	mononucleotide	T	1.00e+00	18
+22	hg18.chr1	52103	52120	panTro2.chrUn	9718011	9718024	dinucleotide	AC	4.00e+00	6
+25	hg18.chr1	63706	63720	panTro2.chrUn	9730896	9730914	mononucleotide	T	1.60e+01	14
+25	hg18.chr1	63706	63720	panTro2.chrUn	9730896	9730914	dinucleotide	TA	0.00e+00	6
+25	hg18.chr1	63706	63720	panTro2.chrUn	9730896	9730914	tetranucleotide	ATAC	9.00e+00	5
+26	hg18.chr1	67038	67059	panTro2.chrUn	9734760	9734777	mononucleotide	A	1.60e+01	17
+27	hg18.chr1	72077	72088	panTro2.chrUn	9742946	9742957	dinucleotide	AC	0.00e+00	5
+28	hg18.chr1	73838	73906	panTro2.chr15	99975357	99975380	tetranucleotide	AAAG	1.44e+02	10
+32	hg18.chr1	81064	81077	panTro2.chrUn	1797471	1797489	mononucleotide	A	2.50e+01	13
+35	hg18.chr1	82527	82541	panTro2.chr1_random	7070707	7070721	mononucleotide	A	0.00e+00	14
+40	hg18.chr1	91199	91212	panTro2.chr1_random	7089889	7089900	mononucleotide	A	4.00e+00	11
+41	hg18.chr1	91538	91554	panTro2.chr1	223998154	223998167	mononucleotide	A	9.00e+00	13
+42	hg18.chr1	95472	95491	panTro2.chr1_random	7092383	7092404	dinucleotide	AT	1.85e+01	22
+42	hg18.chr1	95472	95491	panTro2.chr1_random	7092383	7092404	dinucleotide	AC	3.60e+01	12
+43	hg18.chr1	96802	96815	panTro2.chr1	243988	244001	dinucleotide	TC	0.00e+00	6
+44	hg18.chr1	98409	98425	panTro2.chr1_random	7095323	7095342	mononucleotide	A	9.00e+00	16
+45	hg18.chr1	101230	101250	panTro2.chr1	248453	248467	mononucleotide	A	1.85e+01	25
+45	hg18.chr1	101230	101250	panTro2.chr1	248453	248467	dinucleotide	GT	4.00e+00	17
+49	hg18.chr1	112974	112995	panTro2.chr1	262299	262320	trinucleotide	TAA	4.00e+00	4
+49	hg18.chr1	112974	112995	panTro2.chr1	262299	262320	dinucleotide	TA	5.00e-01	15
+49	hg18.chr1	112974	112995	panTro2.chr1	262299	262320	mononucleotide	T	9.00e+00	15
+49	hg18.chr1	112974	112995	panTro2.chr1	262299	262320	dinucleotide	CA	1.00e+00	5
+55	hg18.chr1	114709	114728	panTro2.chr1	262958	262973	mononucleotide	A	1.60e+01	30
+56	hg18.chr1	120154	120164	panTro2.chr1	269287	269300	mononucleotide	A	8.89e+00	109
+56	hg18.chr1	120154	120164	panTro2.chr1	269287	269300	mononucleotide	T	8.80e+00	89
+72	hg18.chr1	141348	141361	panTro2.chr1_random	7195790	7195814	mononucleotide	T	3.65e+01	65
+72	hg18.chr1	141348	141361	panTro2.chr1_random	7195790	7195814	trinucleotide	GTG	0.00e+00	8
+72	hg18.chr1	141348	141361	panTro2.chr1_random	7195790	7195814	trinucleotide	AAC	0.00e+00	21
+72	hg18.chr1	141348	141361	panTro2.chr1_random	7195790	7195814	mononucleotide	A	8.33e+00	52
+72	hg18.chr1	141348	141361	panTro2.chr1_random	7195790	7195814	trinucleotide	TTA	0.00e+00	4
+72	hg18.chr1	141348	141361	panTro2.chr1_random	7195790	7195814	trinucleotide	AAT	0.00e+00	25
+73	hg18.chr1	145718	145733	panTro2.chr1_random	7202121	7202135	mononucleotide	A	1.00e+00	14
+74	hg18.chr1	146971	146985	panTro2.chr1_random	7209449	7209463	mononucleotide	A	2.00e+00	24
+74	hg18.chr1	146971	146985	panTro2.chr1_random	7209449	7209463	mononucleotide	T	4.00e+00	10
+75	hg18.chr1	156998	157017	panTro2.chr1_random	7219691	7219710	mononucleotide	T	4.00e+00	16
+75	hg18.chr1	156998	157017	panTro2.chr1_random	7219691	7219710	tetranucleotide	GGAG	0.00e+00	16
+75	hg18.chr1	156998	157017	panTro2.chr1_random	7219691	7219710	tetranucleotide	TTTA	0.00e+00	24
+75	hg18.chr1	156998	157017	panTro2.chr1_random	7219691	7219710	pentanucleotide	AAAAC	1.00e+00	8
+75	hg18.chr1	156998	157017	panTro2.chr1_random	7219691	7219710	mononucleotide	A	3.00e+00	61
+75	hg18.chr1	156998	157017	panTro2.chr1_random	7219691	7219710	dinucleotide	AC	0.00e+00	34
+76	hg18.chr1	160798	160818	panTro2.chr1	224075335	224075355	mononucleotide	T	2.50e+01	13
+76	hg18.chr1	160798	160818	panTro2.chr1	224075335	224075355	pentanucleotide	GTTTT	0.00e+00	4
+77	hg18.chr1	165310	165322	panTro2.chr1_random	7295748	7295770	mononucleotide	A	1.00e+02	24
+77	hg18.chr1	165310	165322	panTro2.chr1_random	7295748	7295770	dinucleotide	CA	0.00e+00	10
+78	hg18.chr1	166066	166095	panTro2.chr1	224080667	224080691	pentanucleotide	AAAAC	1.00e+00	4
+83	hg18.chr1	219668	219689	panTro2.chr3	77587413	77587435	tetranucleotide	TAAA	0.00e+00	5
+87	hg18.chr1	222298	222309	panTro2.chrUn	1781936	1781946	mononucleotide	T	1.00e+00	20
+93	hg18.chr1	228854	228869	panTro2.chr1_random	7327066	7327078	mononucleotide	A	2.90e+01	31
+94	hg18.chr1	231193	231209	panTro2.chr1	223990552	223990572	mononucleotide	T	1.60e+01	16
+97	hg18.chr1	237516	237529	panTro2.chr1_random	7333512	7333527	mononucleotide	A	1.00e+01	28
+97	hg18.chr1	237516	237529	panTro2.chr1_random	7333512	7333527	mononucleotide	T	1.60e+01	15
+97	hg18.chr1	237516	237529	panTro2.chr1_random	7333512	7333527	tetranucleotide	TTTA	9.00e+00	7
+98	hg18.chr1	237855	237870	panTro2.chr1	223998154	223998167	mononucleotide	A	4.00e+00	13
+99	hg18.chr1	245760	245793	panTro2.chr1_random	7340006	7340026	dinucleotide	AT	2.50e+01	52
+99	hg18.chr1	245760	245793	panTro2.chr1_random	7340006	7340026	dinucleotide	TC	1.67e+01	64
+99	hg18.chr1	245760	245793	panTro2.chr1_random	7340006	7340026	mononucleotide	A	2.50e+01	34
+99	hg18.chr1	245760	245793	panTro2.chr1_random	7340006	7340026	dinucleotide	GT	2.31e+01	114
+99	hg18.chr1	245760	245793	panTro2.chr1_random	7340006	7340026	dinucleotide	AC	4.90e+01	34
+100	hg18.chr1	247545	247565	panTro2.chr1_random	7109243	7109259	mononucleotide	A	8.00e+00	26
diff -r 447c74d98fe5 -r ad3f61801a82 tool_conf.xml.sample
--- a/tool_conf.xml.sample	Wed Sep 24 15:05:38 2008 -0400
+++ b/tool_conf.xml.sample	Wed Sep 24 18:20:39 2008 -0400
@@ -134,6 +134,8 @@
     <tool file="regVariation/getIndelRates_3way.xml" />
     <tool file="regVariation/substitutions.xml" />
     <tool file="regVariation/substitution_rates.xml" />
+    <tool file="regVariation/microsats_alignment_level.xml" />
+    <tool file="regVariation/microsats_mutability.xml" />
   </section>
   <section name="Multiple regression" id="multReg">
     <tool file="regVariation/linear_regression.xml" />
diff -r 447c74d98fe5 -r ad3f61801a82 tools/regVariation/getIndelRates_3way.xml
--- a/tools/regVariation/getIndelRates_3way.xml	Wed Sep 24 15:05:38 2008 -0400
+++ b/tools/regVariation/getIndelRates_3way.xml	Wed Sep 24 18:20:39 2008 -0400
@@ -5,7 +5,7 @@
     #if $region.type == "align"
         "None"
     #else
-        $region.input2 $input2_dbkey
$input2_chromCol,$input2_startCol,$input2_endCol,$input2_strandCol
+        $region.input2 $input2.dbkey
$input2.metadata.chromCol,$input2.metadata.startCol,$input2.metadata.endCol,$input2.metadata.strandCol
     #end if
   </command>
   <inputs>
diff -r 447c74d98fe5 -r ad3f61801a82 tools/regVariation/microsats_alignment_level.py
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tools/regVariation/microsats_alignment_level.py	Wed Sep 24 18:20:39 2008 -0400
@@ -0,0 +1,323 @@
+ #!/usr/bin/env python
+#Guruprasad Ananda
+"""
+Uses SPUTNIK to fetch microsatellites and extracts orthologous repeats from the sputnik
output.
+"""
+from galaxy import eggs
+import sys, os, tempfile, string, math, re
+
+def reverse_complement(text):
+    DNA_COMP = string.maketrans( "ACGTacgt", "TGCAtgca" )
+    comp = [ch for ch in text.translate(DNA_COMP)]
+    comp.reverse()
+    return "".join(comp)
+
+def main():
+    if len(sys.argv) != 8:
+        print >>sys.stderr, "Insufficient number of arguments."
+        sys.exit()
+    
+    infile = open(sys.argv[1],'r')
+    separation = int(sys.argv[2])
+    outfile = sys.argv[3]
+    align_type = sys.argv[4]
+    if align_type == "2way":
+        align_type_len = 2
+    elif align_type == "3way":
+        align_type_len = 3
+    mono_threshold = int(sys.argv[5])
+    non_mono_threshold = int(sys.argv[6])
+    allow_different_units = int(sys.argv[7])
+    
+    print "Min distance = %d bp; Min threshold for mono repeats = %d; Min threshold
for non-mono repeats = %d; Allow different motifs = %s" %(separation, mono_threshold,
non_mono_threshold, allow_different_units==1)
+    try:
+        fout = open(outfile, "w")
+        print >>fout,
"#Block\tSeq1_Name\tSeq1_Start\tSeq1_End\tSeq1_Type\tSeq1_Length\tSeq1_RepeatNumber\tSeq1_Unit\tSeq2_Name\tSeq2_Start\tSeq2_End\tSeq2_Type\tSeq2_Length\tSeq2_RepeatNumber\tSeq2_Unit"
+        #sputnik_cmd = os.path.join(os.path.split(sys.argv[0])[0], "sputnik")
+        sputnik_cmd = "bx-sputnik"
+        input = infile.read()
+        skipped = 0
+        block_num = 0
+        input = input.replace('\r','\n')
+        for block in input.split('\n\n'):
+            block_num += 1
+            tmpin = tempfile.NamedTemporaryFile()
+            tmpout = tempfile.NamedTemporaryFile()
+            tmpin.write(block.strip())
+            blk = tmpin.read()
+            cmdline = sputnik_cmd + " " + tmpin.name + "  > /dev/null
2>&1 >> " + tmpout.name
+            try:
+                os.system(cmdline)
+            except Exception, es:
+                continue
+            sputnik_out = tmpout.read()
+            tmpin.close()
+            tmpout.close()
+            if sputnik_out != "":
+                if len(block.split('>')[1:]) != 2:       
#len(sputnik_out.split('>')):
+                    skipped += 1
+                    continue
+                align_block = block.strip().split('>')
+                
+                lendict = {'mononucleotide':1, 'dinucleotide':2,
'trinucleotide':3, 'tetranucleotide':4, 'pentanucleotide':5,
'hexanucleotide':6}
+                blockdict={}
+                r=0
+                namelist=[]
+                for k,sput_block in enumerate(sputnik_out.split('>')[1:]):
+                    whole_seq =
''.join(align_block[k+1].split('\n')[1:]).replace('\n','').strip()
+                    p = re.compile('\n(\S*nucleotide)')
+                    repeats = p.split(sput_block.strip())
+                    repeats_count = len(repeats)
+                    j = 1
+                    name = repeats[0].strip()
+                    try:
+                        coords = re.search('\d+[-_:]\d+',name).group()
+                        coords =
coords.replace('_','-').replace(':','-')
+                    except Exception, e:
+                        coords = '0-0'
+                        pass
+                    r += 1
+                    blockdict[r]={}
+                    try:
+                        sp_name = name[:name.index('.')]
+                        chr_name = name[name.index('.'):name.index('(')]
+                        namelist.append(sp_name + chr_name)
+                    except:
+                        namelist.append(name[:20])
+                    while j < repeats_count:
+                        try:
+                            if repeats[j].strip() not in lendict:
+                                j += 2
+                                continue
+                            
+                            if blockdict[r].has_key('types'):
+                                blockdict[r]['types'].append(repeats[j].strip()) 
      #type of microsat     
+                            else:
+                                blockdict[r]['types'] = [repeats[j].strip()]     
         #type of microsat  
+                            
+                            sequence =
''.join(align_block[r].split('\n')[1:]).replace('\n','').strip()
+                            start =
int(repeats[j+1].split('--')[0].split(':')[0].strip())
+                            #check to see if there are gaps before the start of the
repeat, and change the start accordingly
+                            sgaps = 0
+                            ch_pos = start - 1
+                            while ch_pos >= 0:
+                                if whole_seq[ch_pos] == '-':
+                                    sgaps += 1
+                                else:
+                                    break    #break at the 1st non-gap character
+                                ch_pos -= 1
+                            if blockdict[r].has_key('starts'):
+                                blockdict[r]['starts'].append(start+sgaps)       
#start co-ords adjusted with alignment co-ords to include GAPS    
+                            else:
+                                blockdict[r]['starts'] = [start+sgaps]
+                            
+                            end =
int(repeats[j+1].split('--')[0].split(':')[1].strip())
+                            #check to see if there are gaps after the end of the repeat,
and change the end accordingly
+                            egaps = 0
+                            for ch in whole_seq[end:]:
+                                if ch == '-':
+                                    egaps += 1
+                                else:
+                                    break    #break at the 1st non-gap character
+                            if blockdict[r].has_key('ends'):
+                                blockdict[r]['ends'].append(end+egaps)       
#end co-ords adjusted with alignment co-ords to include GAPS    
+                            else:
+                                blockdict[r]['ends'] = [end+egaps]
+                                
+                            repeat_seq =
''.join(repeats[j+1].replace('\r','\n').split('\n')[1:]).strip()
      #Repeat Sequence
+                            repeat_len =
repeats[j+1].split('--')[1].split()[1].strip()
+                            gap_count = repeat_seq.count('-')
+                            #print repeats[j+1].split('--')[1], len(repeat_seq),
repeat_len, gap_count
+                            repeat_len = str(int(repeat_len) - gap_count)
+                            
+                            rel_start = blockdict[r]['starts'][-1]
+                            gaps_before_start = whole_seq[:rel_start].count('-')
+                            
+                            if blockdict[r].has_key('gaps_before_start'):
+                               
blockdict[r]['gaps_before_start'].append(gaps_before_start)  #lengths  
+                            else:
+                                blockdict[r]['gaps_before_start'] =
[gaps_before_start]       #lengths 
+                            
+                            whole_seq_start= int(coords.split('-')[0])
+                            if blockdict[r].has_key('whole_seq_start'):
+                               
blockdict[r]['whole_seq_start'].append(whole_seq_start)  #lengths  
+                            else:
+                                blockdict[r]['whole_seq_start'] =
[whole_seq_start]       #lengths 
+                                
+                            if blockdict[r].has_key('lengths'):
+                                blockdict[r]['lengths'].append(repeat_len) 
#lengths  
+                            else:
+                                blockdict[r]['lengths'] = [repeat_len]      
#lengths 
+                            
+                            if blockdict[r].has_key('counts'):
+                               
blockdict[r]['counts'].append(str(int(repeat_len)/lendict[repeats[j].strip()])) 
#Repeat Unit
+                            else:
+                                blockdict[r]['counts'] =
[str(int(repeat_len)/lendict[repeats[j].strip()])]         #Repeat Unit
+                            
+                            if blockdict[r].has_key('units'):
+                               
blockdict[r]['units'].append(repeat_seq[:lendict[repeats[j].strip()]])  #Repeat
Unit
+                            else:
+                                blockdict[r]['units'] =
[repeat_seq[:lendict[repeats[j].strip()]]]         #Repeat Unit
+                            
+                        except Exception, eh:
+                            pass
+                        j+=2
+                    #check the co-ords of all repeats corresponding to a sequence and
remove adjacent repeats separated by less than the user-specified 'separation'. 
+                    delete_index_list = []
+                    for ind, item in enumerate(blockdict[r]['ends']):
+                        try:
+                            if blockdict[r]['starts'][ind+1]-item <
separation:
+                                if ind not in delete_index_list:
+                                    delete_index_list.append(ind)
+                                if ind+1 not in delete_index_list:
+                                    delete_index_list.append(ind+1)
+                        except Exception, ek:
+                            pass
+                    for index in delete_index_list:    #mark them for deletion
+                        try:
+                            blockdict[r]['starts'][index] = 'marked'
+                            blockdict[r]['ends'][index] = 'marked'
+                            blockdict[r]['types'][index] = 'marked'
+                            blockdict[r]['gaps_before_start'][index] =
'marked'
+                            blockdict[r]['whole_seq_start'][index] =
'marked'
+                            blockdict[r]['lengths'][index] = 'marked'
+                            blockdict[r]['counts'][index] = 'marked'
+                            blockdict[r]['units'][index] = 'marked'
+                        except Exception, ej:
+                            pass
+                    #remove 'marked' elements from all the lists
+                    """
+                    for key in blockdict[r].keys():
+                        for elem in blockdict[r][key]:
+                            if elem == 'marked':
+                                blockdict[r][key].remove(elem)
+                    """
+                    #print blockdict    
+                
+                #make sure that the blockdict has keys for both the species   
+                if (1 not in blockdict) or (2 not in blockdict):
+                    continue
+                
+                visited_2 = [0 for x in range(len(blockdict[2]['starts']))]
+                for ind1,coord_s1 in enumerate(blockdict[1]['starts']):
+                    if coord_s1 == 'marked':
+                        continue
+                    coord_e1 = blockdict[1]['ends'][ind1]
+                    out = []
+                    for ind2,coord_s2 in enumerate(blockdict[2]['starts']):
+                        if coord_s2 == 'marked':
+                            visited_2[ind2] = 1
+                            continue
+                        coord_e2 = blockdict[2]['ends'][ind2]
+                        #skip if the 2 repeats are not of the same type or don't have
the same repeating unit.
+                        if allow_different_units == 0:
+                            if (blockdict[1]['types'][ind1] !=
blockdict[2]['types'][ind2]):
+                                continue
+                            else:
+                                if (blockdict[1]['units'][ind1] not in
blockdict[2]['units'][ind2]*2) and
(reverse_complement(blockdict[1]['units'][ind1]) not in
blockdict[2]['units'][ind2]*2):
+                                    continue
+                        #print >>sys.stderr,
(reverse_complement(blockdict[1]['units'][ind1]) not in
blockdict[2]['units'][ind2]*2)
+                        #skip if the repeat number thresholds are not met
+                        if blockdict[1]['types'][ind1] ==
'mononucleotide':
+                            if (int(blockdict[1]['counts'][ind1]) <
mono_threshold):
+                                continue
+                        else:
+                            if (int(blockdict[1]['counts'][ind1]) <
non_mono_threshold):
+                                continue
+                        
+                        if blockdict[2]['types'][ind2] ==
'mononucleotide':
+                            if (int(blockdict[2]['counts'][ind2]) <
mono_threshold):
+                                continue
+                        else:
+                            if (int(blockdict[2]['counts'][ind2]) <
non_mono_threshold):
+                                continue
+                        #print "s1,e1=%s,%s; s2,e2=%s,%s"
%(coord_s1,coord_e1,coord_s2,coord_e2)
+                        if (coord_s1 in range(coord_s2,coord_e2)) or (coord_e1 in
range(coord_s2,coord_e2)):
+                            out.append(str(block_num))
+                            out.append(namelist[0])
+                            rel_start = blockdict[1]['whole_seq_start'][ind1] +
coord_s1 - blockdict[1]['gaps_before_start'][ind1]
+                            rel_end = rel_start +
int(blockdict[1]['lengths'][ind1]) 
+                            out.append(str(rel_start))
+                            out.append(str(rel_end))
+                            out.append(blockdict[1]['types'][ind1])
+                            out.append(blockdict[1]['lengths'][ind1])
+                            out.append(blockdict[1]['counts'][ind1])
+                            out.append(blockdict[1]['units'][ind1])
+                            out.append(namelist[1])
+                            rel_start = blockdict[2]['whole_seq_start'][ind2] +
coord_s2 - blockdict[2]['gaps_before_start'][ind2]
+                            rel_end = rel_start +
int(blockdict[2]['lengths'][ind2]) 
+                            out.append(str(rel_start))
+                            out.append(str(rel_end))
+                            out.append(blockdict[2]['types'][ind2])
+                            out.append(blockdict[2]['lengths'][ind2])
+                            out.append(blockdict[2]['counts'][ind2])
+                            out.append(blockdict[2]['units'][ind2])
+                            print >>fout, '\t'.join(out)
+                            visited_2[ind2] = 1
+                            out=[]
+                
+                if 0 in visited_2:    #there are still some elements in 2nd set which
haven't found orthologs yet.
+                    for ind2, coord_s2 in enumerate(blockdict[2]['starts']):
+                        if coord_s2 == 'marked':
+                            continue
+                        if visited_2[ind] != 0:
+                            continue
+                        coord_e2 = blockdict[2]['ends'][ind2]
+                        out = []
+                        for ind1,coord_s1 in enumerate(blockdict[1]['starts']):
+                            if coord_s1 == 'marked':
+                                continue
+                            coord_e1 = blockdict[1]['ends'][ind1]
+                            #skip if the 2 repeats are not of the same type or don't
have the same repeating unit.
+                            if allow_different_units == 0:
+                                if (blockdict[1]['types'][ind1] !=
blockdict[2]['types'][ind2]):
+                                    continue
+                                else:
+                                    if (blockdict[1]['units'][ind1] not in
blockdict[2]['units'][ind2]*2):# and
reverse_complement(blockdict[1]['units'][ind1]) not in
blockdict[2]['units'][ind2]*2:
+                                        continue
+                            #skip if the repeat number thresholds are not met
+                            if blockdict[1]['types'][ind1] ==
'mononucleotide':
+                                if (int(blockdict[1]['counts'][ind1]) <
mono_threshold):
+                                    continue
+                            else:
+                                if (int(blockdict[1]['counts'][ind1]) <
non_mono_threshold):
+                                    continue
+                            
+                            if blockdict[2]['types'][ind2] ==
'mononucleotide':
+                                if (int(blockdict[2]['counts'][ind2]) <
mono_threshold):
+                                    continue
+                            else:
+                                if (int(blockdict[2]['counts'][ind2]) <
non_mono_threshold):
+                                    continue
+                            
+                            if (coord_s2 in range(coord_s1,coord_e1)) or (coord_e2 in
range(coord_s1,coord_e1)):
+                                out.append(str(block_num)) 
+                                out.append(namelist[0])
+                                rel_start = blockdict[1]['whole_seq_start'][ind1]
+ coord_s1 - blockdict[1]['gaps_before_start'][ind1]
+                                rel_end = rel_start +
int(blockdict[1]['lengths'][ind1]) 
+                                out.append(str(rel_start))
+                                out.append(str(rel_end))
+                                out.append(blockdict[1]['types'][ind1])
+                                out.append(blockdict[1]['lengths'][ind1])
+                                out.append(blockdict[1]['counts'][ind1])
+                                out.append(blockdict[1]['units'][ind1])
+                                out.append(namelist[1])
+                                rel_start = blockdict[2]['whole_seq_start'][ind2]
+ coord_s2 - blockdict[2]['gaps_before_start'][ind2]
+                                rel_end = rel_start +
int(blockdict[2]['lengths'][ind2]) 
+                                out.append(str(rel_start))
+                                out.append(str(rel_end))
+                                out.append(blockdict[2]['types'][ind2])
+                                out.append(blockdict[2]['lengths'][ind2])
+                                out.append(blockdict[2]['counts'][ind2])
+                                out.append(blockdict[2]['units'][ind2])
+                                print >>fout, '\t'.join(out)
+                                visited_2[ind2] = 1
+                                out=[]
+                            
+                    #print >>fout, blockdict
+    except Exception, exc:
+        print >>sys.stderr, "type(exc),args,exc: %s, %s, %s" %(type(exc),
exc.args, exc)
+
+if __name__ == "__main__":
+    main()
+    
diff -r 447c74d98fe5 -r ad3f61801a82 tools/regVariation/microsats_alignment_level.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tools/regVariation/microsats_alignment_level.xml	Wed Sep 24 18:20:39 2008 -0400
@@ -0,0 +1,61 @@
+<tool id="microsats_align1" name="Extract Orthologous
Microsatellites">
+  <description> from pair-wise alignments</description>
+  <command interpreter="python">
+  	microsats_alignment_level.py $input1 $separation $out_file1 "2way"
$mono_threshold $non_mono_threshold $allow_different_units
+  </command>
+  <inputs>
+    <page>
+    	<param format="fasta" name="input1" type="data"
label="Select data"/>
+    	<param name="separation" size="10" type="integer"
value="10" label="Minimum basepair distance between adjacent
microsatellites"
+    	help="A value of 10 means: Adjacent microsatellites separated by less than 10
basepairs will be excluded from the output."/>
+    	<param name="mono_threshold" size="10"
type="integer" value="9" label="Minimum Threshold for the number
of repeats for mononucleotide microsatellites"
+    	help="A value of 9 means: All mononucleotide microsatellites having fewer than
9 repeats will be excluded from the output."/>
+    	<param name="non_mono_threshold" size="10"
type="integer" value="4" label="Minimum Threshold for the number
of repeats for non-mononucleotide microsatellites"
+    	help="A value of 4 means: All non-mononucleotide microsatellites having fewer
than 4 repeats will be excluded from the output."/>
+    	<param name="allow_different_units" size="5"
type="select" label="Allow orthologous positions to have different
microsatellite repeat units/motifs?">
+    		<option value="0" selected="true">No</option>
+          	<option value="1">Yes</option>
+         </param>
+    </page>
+  </inputs>
+  <outputs>
+    <data format="tabular" name="out_file1"
metadata_source="input1"/>
+  </outputs>
+  <requirements>
+     <requirement type="binary">bx-sputnik</requirement>
+  </requirements>
+  <tests>
+    <test>
+      <param name="input1" value="2way.maf"/>
+      <param name="separation" value="10"/>
+      <param name="mono_threshold" value="9"/>
+      <param name="non_mono_threshold" value="4"/>
+      <param name="allow_different_units" value="0"/>
+      <output name="out_file1" file="ortho_ms.tab"/>
+    </test>
+  </tests>
+
+ <help> 
+
+.. class:: infomark
+
+**What it does**
+
+This tool uses a modified version of SPUTNIK to fetch microsatellite repeats from the
input fasta sequences and extracts orthologous repeats from the sputnik output. The
modified version allows detection of mononucleotide microsatellites. More information on
SPUTNIK can be found on this website_. The modified version is available here_.
+
+-----
+
+.. class:: warningmark
+
+**Note**
+
+- Any block/s not containing exactly 2 species will be omitted. 
+
+- This tool will filter out microsatellites based on the user input values for minimum
distance and repeat number thresholds. Further, this tool will also filter out
microsatellites that have no orthologous microsatellites in one of the species.
+
+.. _website: http://espressosoftware.com/pages/sputnik.jsp   
+.. _here: http://www.bx.psu.edu/svn/universe/dependencies/sputnik/
+</help>  
+
+
+</tool>
\ No newline at end of file
diff -r 447c74d98fe5 -r ad3f61801a82 tools/regVariation/microsats_mutability.py
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tools/regVariation/microsats_mutability.py	Wed Sep 24 18:20:39 2008 -0400
@@ -0,0 +1,504 @@
+#!/usr/bin/env python
+#Guruprasad Ananda
+"""
+This tool computes microsatellite mutability for the orthologous microsatellites fetched
from  'Extract Orthologous Microsatellites from pair-wise alignments' tool.
+"""
+from galaxy import eggs
+import sys, string, re, commands, tempfile, os, fileinput
+from galaxy.tools.util.galaxyops import *
+from bx.intervals.io import *
+from bx.intervals.operations import quicksect
+
+fout = open(sys.argv[2],'w')
+p_group = int(sys.argv[3])        #primary "group-by" feature
+p_bin_size = int(sys.argv[4])
+s_group = int(sys.argv[5])        #sub-group by feature
+s_bin_size = int(sys.argv[6])
+mono_threshold = 9
+non_mono_threshold = 4
+p_group_cols = [p_group, p_group+7]
+s_group_cols = [s_group, s_group+7]
+num_generations = int(sys.argv[7])
+region = sys.argv[8] 
+int_file = sys.argv[9]
+if int_file != "None": #User has specified an interval file
+    try:
+        fint = open(int_file, 'r')
+        dbkey_i = sys.argv[10]
+        chr_col_i, start_col_i, end_col_i, strand_col_i = parse_cols_arg( sys.argv[11] )
+    except:
+        stop_err("Unable to open input Interval file")
+    
+def stop_err(msg):
+    sys.stderr.write(msg)
+    sys.exit()
+
+def reverse_complement(text):
+    DNA_COMP = string.maketrans( "ACGTacgt", "TGCAtgca" )
+    comp = [ch for ch in text.translate(DNA_COMP)]
+    comp.reverse()
+    return "".join(comp)
+
+def get_unique_elems(elems):
+    seen=set()
+    return[x for x in elems if x not in seen and not seen.add(x)]
+
+def get_binned_lists(uniqlist, binsize):
+    binnedlist=[]
+    uniqlist.sort()
+    start = int(uniqlist[0])
+    bin_ind=0
+    l_ind=0
+    binnedlist.append([])
+    while l_ind < len(uniqlist):
+        elem = int(uniqlist[l_ind])
+        if elem in range(start,start+binsize):
+            binnedlist[bin_ind].append(elem)
+        else:
+            start += binsize
+            bin_ind += 1
+            binnedlist.append([])
+            binnedlist[bin_ind].append(elem)
+        l_ind += 1
+    return binnedlist
+
+def fetch_weight(H,C,t):
+    if (H-(C-H)) < t:
+        return 2.0
+    else:
+        return 1.0
+
+def mutabilityEstimator(repeats1,repeats2,thresholds):
+    mut_num = 0.0    #Mutability Numerator
+    mut_den = 0.0    #Mutability denominator
+    for ind,H in enumerate(repeats1):
+        C = repeats2[ind]
+        t = thresholds[ind]
+        w = fetch_weight(H,C,t)
+        mut_num += ((H-C)*(H-C)*w)
+        mut_den += w
+    return [mut_num, mut_den]
+
+def output_writer(blk, blk_lines):
+    global winspecies, speciesind
+    all_elems_1=[]
+    all_elems_2=[]
+    all_s_elems_1=[]
+    all_s_elems_2=[]
+    for bline in blk_lines:
+        if not(bline):
+            continue
+        items = bline.split('\t')
+        seq1 = items[1]
+        start1 = items[2]
+        end1 = items[3]
+        seq2 = items[8]
+        start2 = items[9]
+        end2 = items[10] 
+        if p_group_cols[0] == 6:
+            items[p_group_cols[0]] = int(items[p_group_cols[0]])
+            items[p_group_cols[1]] = int(items[p_group_cols[1]])
+        if s_group_cols[0] == 6:
+            items[s_group_cols[0]] = int(items[s_group_cols[0]])
+            items[s_group_cols[1]] = int(items[s_group_cols[1]])
+        all_elems_1.append(items[p_group_cols[0]])    #primary col elements for species
1
+        all_elems_2.append(items[p_group_cols[1]])    #primary col elements for species
2
+        if s_group_cols[0] != -1:    #sub-group is not None
+            all_s_elems_1.append(items[s_group_cols[0]])    #secondary col elements for
species 1
+            all_s_elems_2.append(items[s_group_cols[1]])    #secondary col elements for
species 2
+    uniq_elems_1 = get_unique_elems(all_elems_1)
+    uniq_elems_2 = get_unique_elems(all_elems_2)
+    if s_group_cols[0] != -1:
+        uniq_s_elems_1 = get_unique_elems(all_s_elems_1)
+        uniq_s_elems_2 = get_unique_elems(all_s_elems_2)
+    mut1={}
+    mut2={}
+    count1 = {}
+    count2 = {}
+    """
+    if p_group_cols[0] == 7:    #i.e. the option chosen is group-by unit(AG, GTC, etc)
+        uniq_elems_1 = get_unique_units(j.sort(lambda x, y: len(x)-len(y)))
+    """
+    if p_group_cols[0] == 6:    #i.e. the option chosen is group-by repeat number.
+        uniq_elems_1 = get_binned_lists(uniq_elems_1,p_bin_size)
+        uniq_elems_2 = get_binned_lists(uniq_elems_2,p_bin_size)
+        
+    if s_group_cols[0] == 6:    #i.e. the option chosen is subgroup-by repeat number.
+        uniq_s_elems_1 = get_binned_lists(uniq_s_elems_1,s_bin_size)
+        uniq_s_elems_2 = get_binned_lists(uniq_s_elems_2,s_bin_size)
+
+    for pitem1 in uniq_elems_1:
+        repeats1 = []
+        repeats2 = []
+        thresholds = []
+        if s_group_cols[0] != -1:    #Sub-group by feature is not None
+            for sitem1 in uniq_s_elems_1:
+                if type(sitem1) == type(''):
+                    sitem1 = sitem1.strip()
+                for bline in blk_lines:
+                    belems = bline.split('\t')
+                    if type(pitem1) == list:
+                        if p_group_cols[0] == 6:
+                            belems[p_group_cols[0]] = int(belems[p_group_cols[0]])
+                        if belems[p_group_cols[0]] in pitem1:
+                            if belems[s_group_cols[0]]==sitem1:
+                                repeats1.append(int(belems[6]))
+                                repeats2.append(int(belems[13]))
+                                if belems[4] == 'mononucleotide':
+                                    thresholds.append(mono_threshold)
+                                else:
+                                    thresholds.append(non_mono_threshold)
+                               
mut1[str(pitem1)+'\t'+str(sitem1)]=mutabilityEstimator(repeats1,repeats2,thresholds)
+                                if region == 'align':
+                                   
count1[str(pitem1)+'\t'+str(sitem1)]=min(sum(repeats1),sum(repeats2))
+                                else:    
+                                    if winspecies == 1:
+                                        count1["%s\t%s"
%(pitem1,sitem1)]=sum(repeats1)
+                                    elif winspecies == 2:
+                                        count1["%s\t%s"
%(pitem1,sitem1)]=sum(repeats2)
+                    else:
+                        if type(sitem1) == list:
+                            if s_group_cols[0] == 6:
+                                belems[s_group_cols[0]] = int(belems[s_group_cols[0]])
+                            if belems[p_group_cols[0]]==pitem1 and
belems[s_group_cols[0]] in sitem1:
+                                repeats1.append(int(belems[6]))
+                                repeats2.append(int(belems[13]))
+                                if belems[4] == 'mononucleotide':
+                                    thresholds.append(mono_threshold)
+                                else:
+                                    thresholds.append(non_mono_threshold)
+                                mut1["%s\t%s"
%(pitem1,sitem1)]=mutabilityEstimator(repeats1,repeats2,thresholds)
+                                if region == 'align':
+                                   
count1[str(pitem1)+'\t'+str(sitem1)]=min(sum(repeats1),sum(repeats2))
+                                else:    
+                                    if winspecies == 1:
+                                       
count1[str(pitem1)+'\t'+str(sitem1)]=sum(repeats1)
+                                    elif winspecies == 2:
+                                       
count1[str(pitem1)+'\t'+str(sitem1)]=sum(repeats2)
+                        else:
+                            if belems[p_group_cols[0]]==pitem1 and
belems[s_group_cols[0]]==sitem1:
+                                repeats1.append(int(belems[6]))
+                                repeats2.append(int(belems[13]))
+                                if belems[4] == 'mononucleotide':
+                                    thresholds.append(mono_threshold)
+                                else:
+                                    thresholds.append(non_mono_threshold)
+                                mut1["%s\t%s"
%(pitem1,sitem1)]=mutabilityEstimator(repeats1,repeats2,thresholds)
+                                if region == 'align':
+                                   
count1[str(pitem1)+'\t'+str(sitem1)]=min(sum(repeats1),sum(repeats2))
+                                else:    
+                                    if winspecies == 1:
+                                        count1["%s\t%s"
%(pitem1,sitem1)]=sum(repeats1)
+                                    elif winspecies == 2:
+                                        count1["%s\t%s"
%(pitem1,sitem1)]=sum(repeats2)
+        else:   #Sub-group by feature is None
+            for bline in blk_lines:
+                belems = bline.split('\t')
+                if type(pitem1) == list:
+                    #print >>sys.stderr, "item: " + str(item1)
+                    if p_group_cols[0] == 6:
+                        belems[p_group_cols[0]] = int(belems[p_group_cols[0]])
+                    if belems[p_group_cols[0]] in pitem1:
+                        repeats1.append(int(belems[6]))
+                        repeats2.append(int(belems[13]))
+                        if belems[4] == 'mononucleotide':
+                            thresholds.append(mono_threshold)
+                        else:
+                            thresholds.append(non_mono_threshold)
+                else:
+                    if belems[p_group_cols[0]]==pitem1:
+                        repeats1.append(int(belems[6]))
+                        repeats2.append(int(belems[13]))
+                        if belems[4] == 'mononucleotide':
+                            thresholds.append(mono_threshold)
+                        else:
+                            thresholds.append(non_mono_threshold)
+            mut1["%s"
%(pitem1)]=mutabilityEstimator(repeats1,repeats2,thresholds)
+            if region == 'align':
+                count1["%s" %(pitem1)]=min(sum(repeats1),sum(repeats2))
+            else:            
+                if winspecies == 1:
+                    count1[str(pitem1)]=sum(repeats1)
+                elif winspecies == 2:
+                    count1[str(pitem1)]=sum(repeats2)
+                
+    for pitem2 in uniq_elems_2:
+        repeats1 = []
+        repeats2 = []
+        thresholds = []
+        if s_group_cols[0] != -1:    #Sub-group by feature is not None
+            for sitem2 in uniq_s_elems_2:
+                if type(sitem2)==type(''):
+                    sitem2 = sitem2.strip()
+                for bline in blk_lines:
+                    belems = bline.split('\t')
+                    if type(pitem2) == list:
+                        if p_group_cols[0] == 6:
+                            belems[p_group_cols[1]] = int(belems[p_group_cols[1]])
+                        if belems[p_group_cols[1]] in pitem2 and
belems[s_group_cols[1]]==sitem2:
+                            repeats2.append(int(belems[13]))
+                            repeats1.append(int(belems[6]))
+                            if belems[4] == 'mononucleotide':
+                                thresholds.append(mono_threshold)
+                            else:
+                                thresholds.append(non_mono_threshold)
+                            mut2["%s\t%s"
%(pitem2,sitem2)]=mutabilityEstimator(repeats2,repeats1,thresholds)
+                            #count2[str(pitem2)+'\t'+str(sitem2)]=len(repeats2)
+                            if region == 'align':
+                                count2["%s\t%s"
%(pitem2,sitem2)]=min(sum(repeats1),sum(repeats2))
+                            else: 
+                                if winspecies == 1:
+                                    count2["%s\t%s"
%(pitem2,sitem2)]=len(repeats2)
+                                elif winspecies == 2:
+                                    count2["%s\t%s"
%(pitem2,sitem2)]=len(repeats1)
+                    else:
+                        if type(sitem2) == list:
+                            if s_group_cols[0] == 6:
+                                belems[s_group_cols[1]] = int(belems[s_group_cols[1]])
+                            if belems[p_group_cols[1]]==pitem2 and
belems[s_group_cols[1]] in sitem2:
+                                repeats2.append(int(belems[13]))
+                                repeats1.append(int(belems[6]))
+                                if belems[4] == 'mononucleotide':
+                                    thresholds.append(mono_threshold)
+                                else:
+                                    thresholds.append(non_mono_threshold)
+                                mut2["%s\t%s"
%(pitem2,sitem2)]=mutabilityEstimator(repeats2,repeats1,thresholds)
+                                if region == 'align':
+                                    count2["%s\t%s"
%(pitem2,sitem2)]=min(sum(repeats1),sum(repeats2))
+                                else: 
+                                    if winspecies == 1:
+                                        count2["%s\t%s"
%(pitem2,sitem2)]=len(repeats2)
+                                    elif winspecies == 2:
+                                        count2["%s\t%s"
%(pitem2,sitem2)]=len(repeats1)
+                        else:
+                            if belems[p_group_cols[1]]==pitem2 and
belems[s_group_cols[1]]==sitem2:
+                                repeats1.append(int(belems[13]))
+                                repeats2.append(int(belems[6]))
+                                if belems[4] == 'mononucleotide':
+                                    thresholds.append(mono_threshold)
+                                else:
+                                    thresholds.append(non_mono_threshold)
+                                mut2["%s\t%s"
%(pitem2,sitem2)]=mutabilityEstimator(repeats2,repeats1,thresholds)
+                                if region == 'align':
+                                    count2["%s\t%s"
%(pitem2,sitem2)]=min(sum(repeats1),sum(repeats2))
+                                else: 
+                                    if winspecies == 1:
+                                        count2["%s\t%s"
%(pitem2,sitem2)]=len(repeats2)
+                                    elif winspecies == 2:
+                                        count2["%s\t%s"
%(pitem2,sitem2)]=len(repeats1)
+        else:   #Sub-group by feature is None
+            for bline in blk_lines:
+                belems = bline.split('\t')
+                if type(pitem2) == list:
+                    if p_group_cols[0] == 6:
+                        belems[p_group_cols[1]] = int(belems[p_group_cols[1]])
+                    if belems[p_group_cols[1]] in pitem2:
+                        repeats2.append(int(belems[13]))
+                        repeats1.append(int(belems[6]))
+                        if belems[4] == 'mononucleotide':
+                            thresholds.append(mono_threshold)
+                        else:
+                            thresholds.append(non_mono_threshold)
+                else:
+                    if belems[p_group_cols[1]]==pitem2:
+                        repeats2.append(int(belems[13]))
+                        repeats1.append(int(belems[6]))
+                        if belems[4] == 'mononucleotide':
+                            thresholds.append(mono_threshold)
+                        else:
+                            thresholds.append(non_mono_threshold)
+            mut2["%s"
%(pitem2)]=mutabilityEstimator(repeats2,repeats1,thresholds)
+            if region == 'align':
+                count2["%s" %(pitem2)]=min(sum(repeats1),sum(repeats2))
+            else:
+                if winspecies == 1:
+                    count2["%s" %(pitem2)]=sum(repeats2)
+                elif winspecies == 2:
+                    count2["%s" %(pitem2)]=sum(repeats1)
+    for key in mut1.keys():
+        if key in mut2.keys():
+            mut = (mut1[key][0]+mut2[key][0])/(mut1[key][1]+mut2[key][1])
+            count = count1[key]
+            del mut2[key]
+        else:
+            unit_found = False
+            if p_group_cols[0] == 7 or s_group_cols[0] == 7: #if it is Repeat Unit (AG,
GCT etc.) check for reverse-complements too
+                if p_group_cols[0] == 7:
+                    this,other = 0,1
+                else:
+                    this,other = 1,0
+                groups1 = key.split('\t')
+                mutn = mut1[key][0]
+                mutd = mut1[key][1]
+                count = 0
+                for key2 in mut2.keys():
+                    groups2 = key2.split('\t')
+                    if groups1[other] == groups2[other]:
+                        if groups1[this] in groups2[this]*2 or
reverse_complement(groups1[this]) in groups2[this]*2:
+                            #mut =
(mut1[key][0]+mut2[key2][0])/(mut1[key][1]+mut2[key2][1])
+                            mutn += mut2[key2][0]
+                            mutd += mut2[key2][1]
+                            count += int(count2[key2])
+                            unit_found = True
+                            del mut2[key2]
+                            #break
+            if unit_found:
+                mut = mutn/mutd
+            else:
+                mut = mut1[key][0]/mut1[key][1]
+                count = count1[key]
+        mut = "%.2e" %(mut/num_generations)
+        if region == 'align':
+            print >>fout, str(blk) + '\t'+seq1 + '\t' + start1+
'\t'+end1+ '\t'+seq2 + '\t'+start2+ '\t'+end2+
'\t'+key.strip()+ '\t'+str(mut) + '\t'+ str(count)
+        elif region == 'win':
+            fout.write("%s\t%s\t%s\t%s\n" %(blk,key.strip(),mut,count))
+            fout.flush()
+            #print >>fout, blk + '\t'+key.strip()+ '\t'+str(mut)+
'\t'+ str(count)
+            
+    #catch any remaining repeats, for instance if the orthologous position contained
different repeat units
+    for remaining_key in mut2.keys():
+        mut = mut2[remaining_key][0]/mut2[remaining_key][1]
+        mut = "%.2e" %(mut/num_generations)
+        count = count2[remaining_key]
+        if region == 'align':
+            print >>fout, str(blk) + '\t'+seq1 + '\t' + start1+
'\t'+end1+ '\t'+seq2 + '\t'+start2+ '\t'+end2+
'\t'+remaining_key.strip()+ '\t'+str(mut)+ '\t'+ str(count)
+        elif region == 'win':
+            fout.write("%s\t%s\t%s\t%s\n"
%(blk,remaining_key.strip(),mut,count))
+            fout.flush()
+            #print >>fout, blk + '\t'+remaining_key.strip()+
'\t'+str(mut)+ '\t'+ str(count)
+
+def counter(node, start, end, report_func):
+    if start <= node.start < end and start < node.end <= end:
+        report_func(node) 
+        if node.right:
+            counter(node.right, start, end, report_func)
+        if node.left:
+            counter(node.left, start, end, report_func)
+    elif node.start < start and node.right:
+        counter(node.right, start, end, report_func)
+    elif node.start >= end and node.left and node.left.maxend > start:
+        counter(node.left, start, end, report_func)
+            
+        
+def main():
+    infile = sys.argv[1]
+    
+    for i, line in enumerate( file ( infile )):
+        line = line.rstrip('\r\n')
+        if len( line )>0 and not line.startswith( '#' ):
+            elems = line.split( '\t' )
+            break
+        if i == 30:
+            break # Hopefully we'll never get here...
+    
+    if len( elems ) != 15:
+        stop_err( "This tool only works on tabular data output by 'Extract
Orthologous Microsatellites from pair-wise alignments' tool. The data in your input
dataset is either missing or not formatted properly." )
+    global winspecies, speciesind
+    if region == 'win':
+        if dbkey_i in elems[1]:
+            winspecies = 1
+            speciesind = 1 
+        elif dbkey_i in elems[8]:
+            winspecies = 2
+            speciesind = 8
+        else:
+            stop_err("The species build corresponding to your interval file is not
present in the Microsatellite file.") 
+        
+    fin = open(infile, 'r')
+    skipped = 0
+    blk=0
+    win=0
+    linestr=""
+    ff=open("junkmabc","w")
+    
+    if region == 'win':
+        
+        """
+        sorted_infile = tempfile.NamedTemporaryFile()
+        if winspecies == 1:
+            cmdline = "sort -n -k 3"+" -o "+sorted_infile.name+"
"+infile
+        elif winspecies == 2:
+            cmdline = "sort -n -k 10"+" -o
"+sorted_infile.name+" "+infile
+        os.system(cmdline)
+        print >>ff, "Finished sorting"
+        """ 
+        msats = NiceReaderWrapper( fileinput.FileInput( infile ),
+                                chrom_col = speciesind,
+                                start_col = speciesind+1,
+                                end_col = speciesind+2,
+                                strand_col = -1,
+                                fix_strand = True)
+        msatTree = quicksect.IntervalTree()
+        for item in msats:
+            #print >>sys.stderr, item
+            if type( item ) is GenomicInterval:
+                msatTree.insert( item, msats.linenum, item.fields )
+        """
+        result = []
+        msatTree.traverse(lambda node: result.append( node ))
+        for n in result:
+            print >>sys.stderr,n.other
+        print >>sys.stderr,msatTree.chroms
+        #sys.exit()
+        """
+        for iline in fint:
+            try:
+                iline = iline.rstrip('\r\n')
+                if not(iline) or iline == "":
+                    continue
+                ielems = iline.strip("\r\n").split('\t')
+                ichr = ielems[chr_col_i]
+                istart = int(ielems[start_col_i])
+                iend = int(ielems[end_col_i])
+                isrc = "%s.%s" %(dbkey_i,ichr)
+                if isrc not in msatTree.chroms:
+                    continue
+                result = []
+                root = msatTree.chroms[isrc]    #root node for the chrom
+                counter(root, istart, iend, lambda node: result.append( node ))
+                if not(result):
+                    continue
+                tmpfile1 = tempfile.NamedTemporaryFile('wb+')
+                for node in result:
+                    tmpfile1.write("%s\n" % "\t".join( node.other ))
+                
+                tmpfile1.seek(0)
+                output_writer(iline, tmpfile1.readlines())
+            except:
+                skipped+=1
+        if skipped:
+            print "Skipped %d intervals as invalid." %(skipped)
+    elif region == 'align':
+        if s_group_cols[0] != -1:
+            print >>fout,
"#Window\tSpecies_1\tWindow_Start\tWindow_End\tSpecies_2\tGroupby_Feature\tSubGroupby_Feature\tMutability\tCount"
+        else:
+            print >>fout,
"#Window\tSpecies_1\tWindow_Start\tWindow_End\tSpecies_2\tGroupby_Feature\tMutability\tCount"
+        prev_bnum = -1
+        try:
+            for line in fin:
+                line = line.strip("\r\n")
+                if not(line) or line == "":
+                    continue
+                elems = line.split('\t')
+                try:
+                    assert int(elems[0])
+                    assert len(elems) == 15
+                except:
+                    continue
+                new_bnum = int(elems[0])
+                if new_bnum != prev_bnum:
+                    if prev_bnum != -1:
+                        output_writer(prev_bnum,
linestr.strip().replace('\r','\n').split('\n'))
+                    linestr = line + "\n"
+                else:
+                    linestr += line
+                    linestr += "\n"
+                prev_bnum = new_bnum
+            output_writer(prev_bnum,
linestr.strip().replace('\r','\n').split('\n'))
+        except Exception, ea:
+            print >>sys.stderr, ea
+            skipped += 1
+        if skipped:
+            print "Skipped %d lines as invalid." %(skipped)
+if __name__ == "__main__":
+    main()
\ No newline at end of file
diff -r 447c74d98fe5 -r ad3f61801a82 tools/regVariation/microsats_mutability.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tools/regVariation/microsats_mutability.xml	Wed Sep 24 18:20:39 2008 -0400
@@ -0,0 +1,117 @@
+<tool id="microsats_mutability1" name="Estimate microsatellite
mutability" version="1.0.0">
+  <description>by specified attributes</description>
+  <command interpreter="python">
+  	microsats_mutability.py 
+  	$input1 
+  	$out_file1 
+  	${pri_condition.primary_group} 
+  	#if $pri_condition.primary_group == "6":
+      ${pri_condition.binsize} ${pri_condition.subgroup} -1 
+    #else:
+      0 ${pri_condition.sub_condition.subgroup} 
+      #if $pri_condition.sub_condition.subgroup == "6":
+       ${pri_condition.sub_condition.s_binsize}
+      #else:
+       -1
+      #end if
+    #end if
+  	$gens
+    ${region.type}
+    #if $region.type == "win":
+      ${region.input2} $input2.dbkey
$input2.metadata.chromCol,$input2.metadata.startCol,$input2.metadata.endCol,$input2.metadata.strandCol
+    #else:
+      "None"
+    #end if
+  </command>
+  <inputs>
+    <page>
+      <param name="input1" type="data" format="tabular"
label="Select dataset containing Orthologous microsatellites"/>
+      <conditional name="region">
+	      <param name="type" type="select" label="Estimate rates
corresponding to" multiple="false">
+	         <option value="align">Alignment block</option>
+	         <option value="win">Intervals in your history</option>
+	     </param>
+	     <when value="win">
+	      	<param format="interval" name="input2"
type="data" label="Choose intervals">
+	      		<validator type="unspecified_build" />
+	    	</param>
+	      </when>
+	      <when value="align" />
+      </conditional>
+      <param name="gens" size="10" type="integer"
value="1" label="Number of generations between the two species in input
file"/>
+      <conditional name="pri_condition">
+	      <param name="primary_group" type="select" label="Group
by" multiple="false">
+	         <option value="4">Motif type (mono/di/tri etc.)</option>
+	         <option value="7">Repeat Unit (AG, GCT etc.)</option>
+	         <option value="6">Repeat Number </option>
+	      </param>
+	      <when value="6">
+	      	<param name="binsize" size="10" type="integer"
value="1" label="Bin-size" help="Bin-size denotes the number of
repeat numbers to be considered as a group. Bin-size of 5 will group every 5 consecutive
repeat numbers into a group."/>
+	      	<param name="subgroup" type="select" label="Sub-group
by" multiple="false">
+		      <option value="-1">None</option>
+			  <option value="4">Motif type (mono/di/tri etc.)</option>
+			  <option value="7">Repeat Unit (AG, GCT etc.)</option>
+			</param>
+	      </when>
+	      <when value="7">
+	        <conditional name="sub_condition">
+	    	   <param name="subgroup" type="select"
label="Sub-group by" multiple="false">
+		    	 <option value="-1">None</option>
+				 <option value="4">Motif type (mono/di/tri etc.)</option>
+				 <option value="6">Repeat Number </option>
+			   </param>
+			   <when value="-1"></when>
+		       <when value="4"></when>
+		       <when value="6">
+		      	  <param name="s_binsize" size="10"
type="integer" value="1" label="Bin size"
help="Bin-size denotes the number of repeat numbers to be considered as a group.
Bin-size of 5 will group every 5 consecutive repeat numbers into a group."/>
+		       </when>
+			</conditional>
+	      </when>
+	      <when value="4">
+			<conditional name="sub_condition">
+	    	   <param name="subgroup" type="select"
label="Sub-group by" multiple="false">
+		    	 <option value="-1">None</option>
+				 <option value="7">Repeat Unit (AG, GCT etc.)</option>
+				 <option value="6">Repeat Number </option>
+			   </param>
+			   <when value="-1"></when>
+		       <when value="7"></when>
+			   <when value="6">
+		      	  <param name="s_binsize" size="10"
type="integer" value="1" label="Bin size"
help="Bin-size denotes the number of repeat numbers to be considered as a group.
Bin-size of 5 will group every 5 consecutive repeat numbers into a group."/>
+		       </when>
+			</conditional>
+	      </when>
+      </conditional>
+    </page>
+  </inputs>
+  <outputs>
+    <data format="tabular" name="out_file1" />
+  </outputs>
+  <!-- 
+  <tests>
+    <test>
+      <param name="input1" value="ortho_ms.tab"/>
+      <param name="type" value="align"/>
+      <param name="gens" value="1"/>
+      <param name="primary_group" value="4"/>
+      <param name="sub_condition|subgroup" value="7"/>
+      <output name="out_file1" file="ortho_ms_mut.tab"/>
+    </test>
+  </tests>
+   -->
+<help>
+.. class:: infomark
+
+**What it does**
+
+This tool computes microsatellite mutability for the orthologous microsatellites fetched
from  'Extract Orthologous Microsatellites from pair-wise alignments' tool.
+
+-----
+
+.. class:: warningmark
+
+**Note**
+
+The user selected group and subgroup by features, the computed mutability and the count
of the number of repeats used to compute that mutability are added as columns to the
output.
+</help>
+</tool>

    

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[galaxy-dev] [hg] galaxy 1529: Adding tools to fetch microsatellites and esti...