Galaxy Devs,
I have a (semi) working data manager and I'm stuck on what exactly is going wrong. Most of it appears to be working properly, the intended file (pouya_test_motifs.bed.bgz) is being downloaded to the right directory (/galaxy-dist/tool-data/motifs). However, the .loc file that describes the data table isn't being set to the right place. It should be going to (/galaxy-dist/tool-data/motif_databases.loc) but it ends up in (./database/tmp/tmp-toolshed-gmfcrTJ8T4R/motif_databases.loc). I think it's because /galaxy-dist/tool_data_conf.xml isn't being updated.
In addition, I have been working off of the example data manager data_manager_fetch_genome_all_fasta. What is the usage of tool_data_table_conf.xml.sample? Does it get automatically merged with tool_data_table_conf.xml in the galaxy root directory?
For reference, the tools is "region_motif_data_manager" in the testtoolshed. Has anyone else run into this problem? Thanks!
Jeremy Liu jeremy.liu@yale.edu PO Box 207077 New Haven, CT 06520-7077 352.871.1258