Hi all, I got a "Internal Server Error" ==> "KeyError: 'tool_panel_section' " when I'm trying to install a new tool from our toolshed (see stacktrace below).
My galaxy instance was cloned from
commit 217854827ac7dfc88c5388cd2ecb24fffd86c060 Merge: 056a7e0 ad0d0bc Author: Björn Grüning bjoern@gruenings.eu Date: Mon Oct 10 10:23:37 2016 +0200
with only a few minor(?) (admin...) modifications under config/* This error was raised when I've removed + re-installed a tool from the toolshed.
How can I fix this ?
Thanks
Pierre
127.0.0.1 - - [19/Oct/2016:15:15:44 +0200] "POST /admin_toolshed/prepare_for_install HTTP/1.1" 500 - "http://127.0.0.1:8080/admin_toolshed/prepare_for_install?changeset_revisions..." "Mozilla/5.0 (X11; Ubuntu; Linux i686; rv:49.0) Gecko/20100101 Firefox/49.0" Error - <type 'exceptions.KeyError'>: 'tool_panel_section' URL: http://127.0.0.1:8080/admin_toolshed/prepare_for_install File '/home/lindenb/tmp/GALAXY/galaxy.gitlab/lib/galaxy/web/framework/middleware/error.py', line 151 in __call__ app_iter = self.application(environ, sr_checker) File '/home/lindenb/tmp/GALAXY/galaxy.gitlab/.venv/local/lib/python2.7/site-packages/paste/recursive.py', line 85 in __call__ return self.application(environ, start_response) File '/home/lindenb/tmp/GALAXY/galaxy.gitlab/.venv/local/lib/python2.7/site-packages/paste/httpexceptions.py', line 640 in __call__ return self.application(environ, start_response) File '/home/lindenb/tmp/GALAXY/galaxy.gitlab/lib/galaxy/web/framework/base.py', line 135 in __call__ return self.handle_request( environ, start_response ) File '/home/lindenb/tmp/GALAXY/galaxy.gitlab/lib/galaxy/web/framework/base.py', line 194 in handle_request body = method( trans, **kwargs ) File '/home/lindenb/tmp/GALAXY/galaxy.gitlab/lib/galaxy/web/framework/decorators.py', line 98 in decorator return func( self, trans, *args, **kwargs ) File '/home/lindenb/tmp/GALAXY/galaxy.gitlab/lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py', line 1080 in prepare_for_install install_repository_manager.handle_tool_shed_repositories( installation_dict ) File '/home/lindenb/tmp/GALAXY/galaxy.gitlab/lib/tool_shed/galaxy_install/install_manager.py', line 633 in handle_tool_shed_repositories new_tool_panel_section_label=new_tool_panel_section_label ) File '/home/lindenb/tmp/GALAXY/galaxy.gitlab/lib/tool_shed/galaxy_install/repository_dependencies/repository_dependency_manager.py', line 198 in create_repository_dependency_objects self.app.installed_repository_manager.activate_repository( repository_db_record ) File '/home/lindenb/tmp/GALAXY/galaxy.gitlab/lib/tool_shed/galaxy_install/installed_repository_manager.py', line 94 in activate_repository tool_panel_dict = repository.metadata[ 'tool_panel_section' ] KeyError: 'tool_panel_section'