14 Oct
2015
14 Oct
'15
11:38 p.m.
Hi there all, Has anyone had success setting up job_conf.xml for slurm based clusters? I am having trouble getting the GALAXY_SLOTS env var set for any jobs. I've tried looking at destinations in the job_conf.xml but can't get SLURM_NTASKS to be set correctly so the slurm run script can translate that into GALAXY_SLOTS.. Does anyone have a toy example of a job_conf.xml for slurm that they wouldn't mind sharing? Cheers, Simon. -- Simon Gladman | Bioinformatician Victorian Life Sciences Computation Initiative - LSCC 700 Swanston Street, The University of Melbourne | Victoria 3010 Australia T +61 3 9035 5822 | M 0418 421 077 Mail: simon.gladman@unimelb.edu.au Web: http://www.vlsci.org.au