-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1
Looks like a permission issue. Is your FTP server set to use the same user/group as galaxy?
For reference: my proftpd is configured to use LDAP user information, but then it forces the user/group id of uploaded files to be that of galaxy
# Force those numbers even if LDAP finds a valid UID/GID LDAPDefaultUID {galaxy's UID} LDAPDefaultGID {galaxy group GID}
Hope that helps
On 02/03/2014 11:23 AM, Adam Brenner wrote:
Anyone have any ideas on this?
Thanks, -Adam
-- Adam Brenner Computer Science, Undergraduate Student Donald Bren School of Information and Computer Sciences
System Administrator, HPC Cluster Office of Information Technology http://hpc.oit.uci.edu/
University of California, Irvine www.ics.uci.edu/~aebrenne/ aebrenne@uci.edu
On Thu, Jan 30, 2014 at 2:33 PM, Adam Brenner aebrenne@uci.edu wrote:
Howdy,
I am having trouble uploading data on our local instance of Galaxy here. The method is via FTP and here is the error I am seeing in the logs:
galaxy.jobs.runners DEBUG 2014-01-30 14:29:31,987 execution of external set_meta for job 1367 finished galaxy.jobs DEBUG 2014-01-30 14:29:32,016 (1367) Changing ownership of working directory with: /usr/bin/sudo -E scripts/external_chown_script.py /som/galaxy/database/job_working_directory/001/1367 root 0 galaxy.jobs ERROR 2014-01-30 14:29:32,058 (1367) Failed to change ownership of /som/galaxy/database/job_working_directory/001/1367, failing Traceback (most recent call last): File "/data/apps/galaxy/dist/lib/galaxy/jobs/__init__.py", line 870, in finish self.reclaim_ownership() File "/data/apps/galaxy/dist/lib/galaxy/jobs/__init__.py", line 1316, in reclaim_ownership self._change_ownership( self.galaxy_system_pwent[0], str( self.galaxy_system_pwent[3] ) ) File "/data/apps/galaxy/dist/lib/galaxy/jobs/__init__.py", line 1302, in _change_ownership assert p.returncode == 0 AssertionError
Any idea on how to fix the issue? Thanks, -Adam
-- Adam Brenner Computer Science, Undergraduate Student Donald Bren School of Information and Computer Sciences
System Administrator, HPC Cluster Office of Information Technology http://hpc.oit.uci.edu/
University of California, Irvine www.ics.uci.edu/~aebrenne/ aebrenne@uci.edu
Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
- -- Eric Rasche Programmer II Center for Phage Technology Texas A&M University College Station, TX 77843 404-692-2048 esr@tamu.edu rasche.eric@yandex.ru