Ah, ok, I see, makes sense, but it's a bit confusing :-) Thanks for the explanation, anyway, I'll manually install it in that case.
Best,
Ben -- Benjamin Schuster-Böckler Leadership Fellow for Bioinformatics
☎ +44 1865 617481 ✉ benjamin.schuster-boeckler@ludwig.ox.ac.uk
Ludwig Institute for Cancer Research University of Oxford Old Road Campus Research Building Oxford OX3 7DQ United Kingdom
On 16 Aug 2013, at 14:55, Dave Bouvier dave@bx.psu.edu wrote:
Ben,
In the specific case of the RSEM repository, the tool shed code has determined that the rsem-1.1.17.xml tool definition file will not load correctly into Galaxy, and for that reason the repository is not considered to be installable. The 'Search and browse tool sheds' feature on the Galaxy side filters the list of repositories to those that are determined to be installable.
For more details, see the wiki page for the tool shed at:
http://wiki.galaxyproject.org/RepositoryRevisions#What_does_it_mean_when_rep...
--Dave B.
On 8/16/13 07:25:33.000, Benjamin Schuster-Boeckler wrote:
Yesterday, I noticed that there are some packages in http://toolshed.g2.bx.psu.edu that I can't find when I search the main tool shed on my local instance. I would have thought that the "Search and browse tool sheds" options under "Admin" is just a front-end for the search on the main tool shed on the web, so I was surprised to find differences. How can I install e.g. the RSEM package (http://toolshed.g2.bx.psu.edu/view/victor/rsem) on my local instance then? Is there a way to "pull" from the main tool shed so that I see the same data locally that's on the web?
Thanks in advance, Ben
-- Benjamin Schuster-Böckler Leadership Fellow for Bioinformatics
☎ +44 1865 617481 ✉ benjamin.schuster-boeckler@ludwig.ox.ac.uk
Ludwig Institute for Cancer Research University of Oxford Old Road Campus Research Building Oxford OX3 7DQ United Kingdom
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