Re: [galaxy-dev] tool and planemo problems

How are you running planemo lint - in particular is it set to fail if there are any warnings present (like your missing citation warning)? Peter On Wed, Jul 12, 2017 at 3:52 PM, Matthias Bernt <m.bernt(a)ufz.de&gt; wrote: > Dear list, > > In order to test the job resubmission feature I wrote a little tool for > galaxy that just wastes a specified (minimum) time and memory (using > different programming languages) for testing the new DRMAA job runner that I > wrote. > > When linting it with planemo seemingly all tests are successful, but in the > end I still get a fail -- verbose mode is also of no help here. > > Applying linter tests... CHECK > .. CHECK: 7 test(s) found. > Applying linter output... CHECK > .. INFO: 1 outputs found. > Applying linter inputs... CHECK > .. INFO: Found 3 input parameters. > Applying linter help... CHECK > .. CHECK: Tool contains help section. > .. CHECK: Help contains valid reStructuredText. > Applying linter general... CHECK > .. CHECK: Tool defines a version [0.1.0]. > .. CHECK: Tool defines a name [Waste time and memory]. > .. CHECK: Tool defines an id [sleepwaste]. > .. CHECK: Tool targets 16.01 Galaxy profile. > Applying linter command... CHECK > .. INFO: Tool contains a command. > Applying linter citations... WARNING > .. WARNING: No citations found, consider adding citations to your tool. > Applying linter tool_xsd... CHECK > .. INFO: File validates against XML schema. > Failed linting > > The test of the tool are all successful. Any ideas what is wrong? > > Once the problems are solved, would such a tool also be useful in the > toolshed? > > Cheers, > Matthias > > > > -- > > ------------------------------------------- > Matthias Bernt > Bioinformatics Service > Molekulare Systembiologie (MOLSYB) > Helmholtz-Zentrum für Umweltforschung GmbH - UFZ/ > Helmholtz Centre for Environmental Research GmbH - UFZ > Permoserstraße 15, 04318 Leipzig, Germany > Phone +49 341 235 482296, > m.bernt(a)ufz.de, www.ufz.de > > Sitz der Gesellschaft/Registered Office: Leipzig > Registergericht/Registration Office: Amtsgericht Leipzig > Handelsregister Nr./Trade Register Nr.: B 4703 > Vorsitzender des Aufsichtsrats/Chairman of the Supervisory Board: MinDirig > Wilfried Kraus > Wissenschaftlicher Geschäftsführer/Scientific Managing Director: > Prof. Dr. Dr. h.c. Georg Teutsch > Administrative Geschäftsführerin/ Administrative Managing Director: > Prof. Dr. Heike Graßmann > ------------------------------------------- > > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > https://lists.galaxyproject.org/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/