Title was: [galaxy-iuc] Platform-specific tool dependency support has been enhanced.
On Fri, Oct 4, 2013 at 6:08 PM, Dave Bouvier dave@bx.psu.edu wrote:
Peter,
Thank you for reporting that error, I've committed a fix in 10791:6e063ca1960f.
--Dave B.
Hi Dave,
The new platform specific actions seem to be working nicely for the BLAST+ binaries (see other thread), however there may be some lingering regressions due to being in the wrong directory after downloading files (further to the examples Bjoern and I raised last week).
These 3 were all working in the past (I would have reported them earlier but they fell under the most recent round of "missing test results").
Thanks,
Peter
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http://testtoolshed.g2.bx.psu.edu/view/peterjc/nlstradamus/81cac85fc286
Tests that failed Tool id: nlstradamus Tool version: nlstradamus ... Fatal error: Exit code 127 () /bin/sh: 1: NLStradamus: not found
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http://testtoolshed.g2.bx.psu.edu/view/peterjc/effectivet3/1e681e19e35c
Tests that failed Tool id: effectiveT3 Tool version: effectiveT3 ... Fatal error: Exit code 1 () Contents of '/ToolDependencies/effectiveT3/1.0.1/peterjc/effectivet3/1e681e19e35c/module' is Main JAR was found: '/ToolDependencies/effectiveT3/1.0.1/peterjc/effectivet3/1e681e19e35c/TTSS_GUI-1.0.1.jar' Effective T3 model JAR file not found: '/ToolDependencies/effectiveT3/1.0.1/peterjc/effectivet3/1e681e19e35c/module/TTSS_ANIMAL-1.0.1.jar' ... Stderr: Fatal error: Exit code 1 () Contents of '/ToolDependencies/effectiveT3/1.0.1/peterjc/effectivet3/1e681e19e35c/module' is Main JAR was found: '/ToolDependencies/effectiveT3/1.0.1/peterjc/effectivet3/1e681e19e35c/TTSS_GUI-1.0.1.jar' Effective T3 model JAR file not found: '/ToolDependencies/effectiveT3/1.0.1/peterjc/effectivet3/1e681e19e35c/module/TTSS_PLANT-1.0.1.jar'
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http://testtoolshed.g2.bx.psu.edu/view/peterjc/clinod/0d39248a7a9f
Tests that failed Tool id: clinod Tool version: clinod ... Stderr: Fatal error: Exit code 1 () Cannot find a Batchman executable! Batchman does not exist in /ToolDependencies/clinod/1.3/peterjc/clinod/0d39248a7a9f/batchman